MC08g2019 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g2019
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionATP synthase subunit 9, mitochondrial
LocationMC08: 28677969 .. 28678163 (+)
RNA-Seq ExpressionMC08g2019
SyntenyMC08g2019
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGAGCGGGAGGGGAGCTGCAGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTGTGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATCCTTTGCCCCCTTCTTCGCAAGTAAGCAACTGACATTTTTGATCTCATCCGTATTC

mRNA sequence

CTGAGCGGGAGGGGAGCTGCAGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTGTGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATCCTTTGCCCCCTTCTTCGCAAGTAAGCAACTGACATTTTTGATCTCATCCGTATTC

Coding sequence (CDS)

CTGAGCGGGAGGGGAGCTGCAGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTGTGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATCCTTTGCCCCCTTCTTCGCAAGTAAGCAACTGACATTTTTGATCTCATCCGTATTC

Protein sequence

LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFLISSVF
Homology
BLAST of MC08g2019 vs. ExPASy Swiss-Prot
Match: Q37550 (ATP synthase subunit 9, mitochondrial OS=Malus domestica OX=3750 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.8e-18
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 66
          ISSVF
Sbjct: 75 ISSVF 74

BLAST of MC08g2019 vs. ExPASy Swiss-Prot
Match: P17254 (ATP synthase subunit 9, mitochondrial OS=Helianthus annuus OX=4232 GN=ATP9 PE=3 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 7.0e-16
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNV SS IHSVARNPSLAKQSFG AILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVLSSSIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 73

Query: 61 ISSV 65
          ISSV
Sbjct: 75 ISSV 73

BLAST of MC08g2019 vs. ExPASy Swiss-Prot
Match: P60113 (ATP synthase subunit 9, mitochondrial OS=Brassica napus OX=3708 GN=ATP9 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-15
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIA FAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA-----FL 74

Query: 61 ISSVF 66
          I  VF
Sbjct: 75 ILFVF 74

BLAST of MC08g2019 vs. ExPASy Swiss-Prot
Match: P60118 (ATP synthase subunit 9, mitochondrial OS=Petunia hybrida OX=4102 GN=ATP9 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-14
Identity = 48/61 (78.69%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 5  GAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFLISSV 64
          GAA+GIGNVFSSLIHSVARNPSLAKQ FG AILGFALTEAIA FA   A     FLIS V
Sbjct: 19 GAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIALFALMMA-----FLISFV 74

Query: 65 F 66
          F
Sbjct: 79 F 74

BLAST of MC08g2019 vs. ExPASy Swiss-Prot
Match: P60117 (ATP synthase subunit 9, mitochondrial OS=Solanum lycopersicum OX=4081 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-14
Identity = 48/61 (78.69%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 5  GAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFLISSV 64
          GAA+GIGNVFSSLIHSVARNPSLAKQ FG AILGFALTEAIA FA   A     FLIS V
Sbjct: 19 GAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIALFALMMA-----FLISFV 74

Query: 65 F 66
          F
Sbjct: 79 F 74

BLAST of MC08g2019 vs. NCBI nr
Match: WP_131796660.1 (ATP synthase subunit C family protein [Candidatus Frankia datiscae])

HSP 1 Score: 101 bits (252), Expect = 1.45e-25
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQL 57
          LSGRGAA GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIASFAPFFASK L
Sbjct: 37 LSGRGAAFGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKPL 93

BLAST of MC08g2019 vs. NCBI nr
Match: AKE34108.1 (ATP synthase subunit 9, partial [Fragaria chiloensis])

HSP 1 Score: 91.7 bits (226), Expect = 1.16e-22
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIASFAP  A     FL
Sbjct: 1  IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 60

Query: 61 ISSVF 65
          ISSVF
Sbjct: 61 ISSVF 60

BLAST of MC08g2019 vs. NCBI nr
Match: YP_009241667.1 (ATPase subunit 9 [Ziziphus jujuba] >AMP43650.1 ATPase subunit 9 [Ziziphus jujuba])

HSP 1 Score: 92.0 bits (227), Expect = 1.18e-22
Identity = 53/65 (81.54%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAAVGIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

BLAST of MC08g2019 vs. NCBI nr
Match: YP_002608407.1 (ATPase subunit 9 [Vitis vinifera] >ACS15186.1 ATPase subunit 9 [Vitis vinifera] >CAQ77677.1 ATPase subunit 9 [Vitis vinifera] >VZL70178.1 atp9 [Vitis riparia x Vitis cinerea])

HSP 1 Score: 91.7 bits (226), Expect = 1.63e-22
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

BLAST of MC08g2019 vs. NCBI nr
Match: AHF22792.1 (ATP synthase subunit 9, partial [Fragaria iinumae] >AHF22793.1 ATP synthase subunit 9, partial [Fragaria mandshurica] >AHF22795.1 ATP synthase subunit 9, partial [Fragaria chiloensis] >AHF22796.1 ATP synthase subunit 9, partial [Fragaria virginiana] >AHF22797.1 ATP synthase subunit 9, partial [Fragaria vesca subsp. vesca] >AKE34106.1 ATP synthase subunit 9, partial [Fragaria vesca subsp. bracteata])

HSP 1 Score: 91.7 bits (226), Expect = 1.68e-22
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

BLAST of MC08g2019 vs. ExPASy TrEMBL
Match: A0A0F6T772 (ATP synthase subunit 9, mitochondrial (Fragment) OS=Fragaria chiloensis OX=101007 GN=atp9 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.62e-23
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIASFAP  A     FL
Sbjct: 1  IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 60

Query: 61 ISSVF 65
          ISSVF
Sbjct: 61 ISSVF 60

BLAST of MC08g2019 vs. ExPASy TrEMBL
Match: A0A142BZ06 (ATP synthase subunit 9, mitochondrial OS=Ziziphus jujuba OX=326968 GN=atp9 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.72e-23
Identity = 53/65 (81.54%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAAVGIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

BLAST of MC08g2019 vs. ExPASy TrEMBL
Match: B6VJY9 (ATP synthase subunit 9, mitochondrial OS=Vitis vinifera OX=29760 GN=atp9 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.91e-23
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

BLAST of MC08g2019 vs. ExPASy TrEMBL
Match: A0A654ICJ0 (ATP synthase subunit 9, mitochondrial OS=Vitis riparia x Vitis cinerea OX=2018007 GN=atp9 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.91e-23
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

BLAST of MC08g2019 vs. ExPASy TrEMBL
Match: A0A0B4L0M8 (ATP synthase subunit 9, mitochondrial (Fragment) OS=Fragaria iinumae OX=64939 GN=atp9 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.13e-23
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

BLAST of MC08g2019 vs. TAIR 10
Match: AT2G07671.1 (ATP synthase subunit C family protein )

HSP 1 Score: 83.2 bits (204), Expect = 8.5e-17
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIA FAP  A     FL
Sbjct: 26 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA-----FL 85

Query: 61 ISSVF 66
          I  VF
Sbjct: 86 ILFVF 85

BLAST of MC08g2019 vs. TAIR 10
Match: ATMG01080.1 (mitochondrial F0-ATPase subunit 9 )

HSP 1 Score: 83.2 bits (204), Expect = 8.5e-17
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFG AILGFALTEAIA FAP  A     FL
Sbjct: 26 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA-----FL 85

Query: 61 ISSVF 66
          I  VF
Sbjct: 86 ILFVF 85

BLAST of MC08g2019 vs. TAIR 10
Match: ATMG00040.1 (ATP synthase subunit C family protein )

HSP 1 Score: 47.8 bits (112), Expect = 4.0e-06
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGCAILGFALTEAIASF 49
          ++  GAA+GIGNVFSSLIHSVARNPSLA  +    ++   L   +A+F
Sbjct: 26 IASAGAAIGIGNVFSSLIHSVARNPSLATTT--VLVVTLTLLGGVAAF 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q375509.8e-1880.00ATP synthase subunit 9, mitochondrial OS=Malus domestica OX=3750 GN=ATP9 PE=3 SV... [more]
P172547.0e-1676.56ATP synthase subunit 9, mitochondrial OS=Helianthus annuus OX=4232 GN=ATP9 PE=3 ... [more]
P601131.2e-1575.38ATP synthase subunit 9, mitochondrial OS=Brassica napus OX=3708 GN=ATP9 PE=2 SV=... [more]
P601182.3e-1478.69ATP synthase subunit 9, mitochondrial OS=Petunia hybrida OX=4102 GN=ATP9 PE=2 SV... [more]
P601172.3e-1478.69ATP synthase subunit 9, mitochondrial OS=Solanum lycopersicum OX=4081 GN=ATP9 PE... [more]
Match NameE-valueIdentityDescription
WP_131796660.11.45e-2594.74ATP synthase subunit C family protein [Candidatus Frankia datiscae][more]
AKE34108.11.16e-2280.00ATP synthase subunit 9, partial [Fragaria chiloensis][more]
YP_009241667.11.18e-2281.54ATPase subunit 9 [Ziziphus jujuba] >AMP43650.1 ATPase subunit 9 [Ziziphus jujuba... [more]
YP_002608407.11.63e-2280.00ATPase subunit 9 [Vitis vinifera] >ACS15186.1 ATPase subunit 9 [Vitis vinifera] ... [more]
AHF22792.11.68e-2280.00ATP synthase subunit 9, partial [Fragaria iinumae] >AHF22793.1 ATP synthase subu... [more]
Match NameE-valueIdentityDescription
A0A0F6T7725.62e-2380.00ATP synthase subunit 9, mitochondrial (Fragment) OS=Fragaria chiloensis OX=10100... [more]
A0A142BZ065.72e-2381.54ATP synthase subunit 9, mitochondrial OS=Ziziphus jujuba OX=326968 GN=atp9 PE=3 ... [more]
B6VJY97.91e-2380.00ATP synthase subunit 9, mitochondrial OS=Vitis vinifera OX=29760 GN=atp9 PE=3 SV... [more]
A0A654ICJ07.91e-2380.00ATP synthase subunit 9, mitochondrial OS=Vitis riparia x Vitis cinerea OX=201800... [more]
A0A0B4L0M88.13e-2380.00ATP synthase subunit 9, mitochondrial (Fragment) OS=Fragaria iinumae OX=64939 GN... [more]
Match NameE-valueIdentityDescription
AT2G07671.18.5e-1775.38ATP synthase subunit C family protein [more]
ATMG01080.18.5e-1775.38mitochondrial F0-ATPase subunit 9 [more]
ATMG00040.14.0e-0654.17ATP synthase subunit C family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000454ATP synthase, F0 complex, subunit CPRINTSPR00124ATPASECcoord: 32..57
score: 43.74
coord: 15..30
score: 50.37
IPR000454ATP synthase, F0 complex, subunit CPANTHERPTHR10031ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIALcoord: 4..62
IPR002379V-ATPase proteolipid subunit C-like domainPFAMPF00137ATP-synt_Ccoord: 1..46
e-value: 6.3E-7
score: 29.6
IPR038662F1F0 ATP synthase subunit C superfamilyGENE3D1.20.20.10F1F0 ATP synthase subunit Ccoord: 1..59
e-value: 3.0E-18
score: 67.7
NoneNo IPR availablePANTHERPTHR10031:SF38ATP SYNTHASE SUBUNIT 9, MITOCHONDRIALcoord: 4..62
NoneNo IPR availableCDDcd18182ATP-synt_Fo_c_ATP5G3coord: 5..49
e-value: 2.62654E-14
score: 58.6752
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding sitePROSITEPS00605ATPASE_Ccoord: 22..43
IPR035921F/V-ATP synthase subunit C superfamilySUPERFAMILY81333F1F0 ATP synthase subunit Ccoord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g2019.1MC08g2019.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function GO:0005524 ATP binding
molecular_function GO:0008289 lipid binding
molecular_function GO:0015078 proton transmembrane transporter activity