MC08g1686 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g1686
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionprotein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like
LocationMC08: 24825941 .. 24826153 (-)
RNA-Seq ExpressionMC08g1686
SyntenyMC08g1686
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGCGAGGATATGCGGCGGTGGCGGCGGATAGAGTTGTGGCAAAAAGTGGCAGCAAAACGAAGAAGGAAGAAGCAGAAAGAAGTACAGAAGAGAAGATGGCGTGGGTCCCTGATCCGGTGACCGGTTACTACCGGCCGGAGAACTGCGCCGACGAGATCGATCCCGTCGACCTCCGTGCTATGCTTCTGAAGCCGAGAAGAAAAATAGTCAAT

mRNA sequence

AGGCGAGGATATGCGGCGGTGGCGGCGGATAGAGTTGTGGCAAAAAGTGGCAGCAAAACGAAGAAGGAAGAAGCAGAAAGAAGTACAGAAGAGAAGATGGCGTGGGTCCCTGATCCGGTGACCGGTTACTACCGGCCGGAGAACTGCGCCGACGAGATCGATCCCGTCGACCTCCGTGCTATGCTTCTGAAGCCGAGAAGAAAAATAGTCAAT

Coding sequence (CDS)

AGGCGAGGATATGCGGCGGTGGCGGCGGATAGAGTTGTGGCAAAAAGTGGCAGCAAAACGAAGAAGGAAGAAGCAGAAAGAAGTACAGAAGAGAAGATGGCGTGGGTCCCTGATCCGGTGACCGGTTACTACCGGCCGGAGAACTGCGCCGACGAGATCGATCCCGTCGACCTCCGTGCTATGCTTCTGAAGCCGAGAAGAAAAATAGTCAAT

Protein sequence

RRGYAAVAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRAMLLKPRRKIVN
Homology
BLAST of MC08g1686 vs. ExPASy Swiss-Prot
Match: Q9SRX6 (Late embryogenis abundant protein 2 OS=Arabidopsis thaliana OX=3702 GN=LEA2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-10
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 1  RRGYAAVAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRA 60
          RRG+AA A   +     +   K+ A  ++ EK  WVPDP TGYYRPE  ++EIDP +LRA
Sbjct: 25 RRGFAAAAKTALDGSVSTAEMKKRAGEASSEKAPWVPDPKTGYYRPETVSEEIDPAELRA 84

Query: 61 MLLKPRR 68
          +LL  ++
Sbjct: 85 ILLNNKQ 91

BLAST of MC08g1686 vs. ExPASy Swiss-Prot
Match: Q93WF6 (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAG21 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-09
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 1  RRGYAAVAADRVVAKSG-------SKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEI 60
          RRGYAA AA   V+  G       +  KK+  E ST +K++WVPDP TGYYRPE  ++EI
Sbjct: 25 RRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEEST-QKISWVPDPKTGYYRPETGSNEI 84

Query: 61 DPVDLRAMLLKPRR 68
          D  +LRA LL  ++
Sbjct: 85 DAAELRAALLNNKQ 97

BLAST of MC08g1686 vs. ExPASy Swiss-Prot
Match: Q39644 (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis OX=2711 GN=LEA5 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-09
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 1  RRGYAAVAADRVVAKSGSKTKKEEAERSTEE---KMAWVPDPVTGYYRPENCADEIDPVD 60
          RRGYAA A    ++++G   K +      E+     AW PDP+TGYYRPEN A EIDP +
Sbjct: 25 RRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAE 84

Query: 61 LRAMLL 64
          LR MLL
Sbjct: 85 LREMLL 90

BLAST of MC08g1686 vs. ExPASy Swiss-Prot
Match: P46522 (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum OX=3635 GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-08
Identity = 36/77 (46.75%), Postives = 42/77 (54.55%), Query Frame = 0

Query: 1   RRGYAAVAADRVVAKSG-----SKTKKEEA--ERSTEE----KMAWVPDPVTGYYRPENC 60
           RRGY+      V A  G      K ++ +A  E S+ E      AW PDPVTGYYRPENC
Sbjct: 25  RRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENC 84

Query: 61  ADEIDPVDLRAMLLKPR 67
             EID  +LR MLL  R
Sbjct: 85  GAEIDAAELREMLLNHR 101

BLAST of MC08g1686 vs. ExPASy Swiss-Prot
Match: P46521 (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum OX=3635 GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-08
Identity = 35/77 (45.45%), Postives = 40/77 (51.95%), Query Frame = 0

Query: 1   RRGYAAVAADRVVAKSGSKTKKEEAER--------STEEK---MAWVPDPVTGYYRPENC 60
           RRGY+      V A  G      + ER        S+E +    AW PDPVTGYYRPENC
Sbjct: 25  RRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENC 84

Query: 61  ADEIDPVDLRAMLLKPR 67
             EID  DLR M+L  R
Sbjct: 85  GAEIDAADLREMMLNHR 101

BLAST of MC08g1686 vs. NCBI nr
Match: XP_022155320.1 (late embryogenis abundant protein 2-like [Momordica charantia])

HSP 1 Score: 139 bits (350), Expect = 4.82e-41
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  RRGYAAVAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRA 60
          RRGYAAVAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRA
Sbjct: 26 RRGYAAVAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRA 85

Query: 61 MLLKPRRKIVN 71
          MLLKPRRKIVN
Sbjct: 86 MLLKPRRKIVN 96

BLAST of MC08g1686 vs. NCBI nr
Match: XP_022155319.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 2.25e-22
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0

Query: 8   AADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRAMLLKPRR 67
           AA R  A+ G   KKEEA RS+ EK+AWVPDPVTG+YRPENC+DEID  DLRA+LLKPRR
Sbjct: 39  AAGRFPARGGGVMKKEEAVRSSREKVAWVPDPVTGFYRPENCSDEIDAADLRALLLKPRR 98

Query: 68  KIVN 71
            I+N
Sbjct: 99  NIIN 102

BLAST of MC08g1686 vs. NCBI nr
Match: XP_023528769.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.3 bits (207), Expect = 3.33e-19
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 0

Query: 1  RRGYAA---VAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVD 60
          RRGY A    A+ R     G   K+E+AERS E K+AWVPDPVTGYYRPEN +DEID VD
Sbjct: 25 RRGYTAEAMAASQRAARDDGMMKKEEQAERSRE-KVAWVPDPVTGYYRPENYSDEIDAVD 84

Query: 61 LRAMLLKPRRKIV 70
          LRAM+L+PRRK +
Sbjct: 85 LRAMMLQPRRKFI 96

BLAST of MC08g1686 vs. NCBI nr
Match: KAG6606955.1 (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 3.42e-19
Identity = 45/64 (70.31%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 8   AADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRAMLLKPRR 67
           AA+ V A+SG   KKEE ERSTE   AWVPDPVTGYYRPEN  D ID VDLRAMLLKP R
Sbjct: 39  AAEGVTARSGGMIKKEEEERSTE-MAAWVPDPVTGYYRPENYTDVIDEVDLRAMLLKPER 98

Query: 68  KIVN 71
            ++N
Sbjct: 99  NVMN 101

BLAST of MC08g1686 vs. NCBI nr
Match: XP_038903721.1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 5.40e-19
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 8   AADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRAMLLKPRR 67
           AA+ + A+S    KKEE+E STE K AWVPDPVTGYYRPEN AD ID VDLRA LLKPRR
Sbjct: 43  AAEGIPARSNGMMKKEESETSTE-KAAWVPDPVTGYYRPENYADVIDAVDLRAKLLKPRR 102

Query: 68  KIVN 71
            I+N
Sbjct: 103 NIIN 105

BLAST of MC08g1686 vs. ExPASy TrEMBL
Match: A0A6J1DM52 (late embryogenis abundant protein 2-like OS=Momordica charantia OX=3673 GN=LOC111022452 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 2.33e-41
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  RRGYAAVAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRA 60
          RRGYAAVAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRA
Sbjct: 26 RRGYAAVAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRA 85

Query: 61 MLLKPRRKIVN 71
          MLLKPRRKIVN
Sbjct: 86 MLLKPRRKIVN 96

BLAST of MC08g1686 vs. ExPASy TrEMBL
Match: A0A6J1DPX0 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111022451 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.09e-22
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0

Query: 8   AADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRAMLLKPRR 67
           AA R  A+ G   KKEEA RS+ EK+AWVPDPVTG+YRPENC+DEID  DLRA+LLKPRR
Sbjct: 39  AAGRFPARGGGVMKKEEAVRSSREKVAWVPDPVTGFYRPENCSDEIDAADLRALLLKPRR 98

Query: 68  KIVN 71
            I+N
Sbjct: 99  NIIN 102

BLAST of MC08g1686 vs. ExPASy TrEMBL
Match: A0A6J1F2C1 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441545 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.53e-19
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1  RRGYAA---VAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVD 60
          RRGY A    A+ R     G   K E+AERS E K+AWVPDPVTGYYRPEN +DEID VD
Sbjct: 25 RRGYTAEAMAASKRAARDDGMMKKGEQAERSRE-KVAWVPDPVTGYYRPENYSDEIDAVD 84

Query: 61 LRAMLLKPRRKIV 70
          LRAM+L+PRRK +
Sbjct: 85 LRAMMLQPRRKFI 96

BLAST of MC08g1686 vs. ExPASy TrEMBL
Match: A0A6J1GAX2 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111452505 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.76e-18
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 8   AADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRAMLLKPRR 67
           AA+ V A+SG   KKEE ER TE   AW+PDPVTGYYRPEN  + ID VDLRAMLLKP+R
Sbjct: 38  AAEGVTARSGGMIKKEEEERRTE-MAAWIPDPVTGYYRPENYTNVIDEVDLRAMLLKPKR 97

Query: 68  KIVN 71
            ++N
Sbjct: 98  NVMN 100

BLAST of MC08g1686 vs. ExPASy TrEMBL
Match: A0A6J1GC45 (protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111452622 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.05e-17
Identity = 44/68 (64.71%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 1  RRGYAAVAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRA 60
          RRGYAA A   V A+ G+KT K        EK +WVPDPVTGYYRPENCA EID  DLRA
Sbjct: 25 RRGYAAAAPQSVAARIGAKTVKST------EKESWVPDPVTGYYRPENCAAEIDAADLRA 84

Query: 61 MLLKPRRK 68
          MLLK  RK
Sbjct: 85 MLLKATRK 86

BLAST of MC08g1686 vs. TAIR 10
Match: AT1G02820.1 (Late embryogenesis abundant 3 (LEA3) family protein )

HSP 1 Score: 64.7 bits (156), Expect = 3.4e-11
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 1  RRGYAAVAADRVVAKSGSKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRA 60
          RRG+AA A   +     +   K+ A  ++ EK  WVPDP TGYYRPE  ++EIDP +LRA
Sbjct: 25 RRGFAAAAKTALDGSVSTAEMKKRAGEASSEKAPWVPDPKTGYYRPETVSEEIDPAELRA 84

Query: 61 MLLKPRR 68
          +LL  ++
Sbjct: 85 ILLNNKQ 91

BLAST of MC08g1686 vs. TAIR 10
Match: AT4G02380.1 (senescence-associated gene 21 )

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-10
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 1  RRGYAAVAADRVVAKSG-------SKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEI 60
          RRGYAA AA   V+  G       +  KK+  E ST +K++WVPDP TGYYRPE  ++EI
Sbjct: 25 RRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEEST-QKISWVPDPKTGYYRPETGSNEI 84

Query: 61 DPVDLRAMLLKPRR 68
          D  +LRA LL  ++
Sbjct: 85 DAAELRAALLNNKQ 97

BLAST of MC08g1686 vs. TAIR 10
Match: AT4G02380.2 (senescence-associated gene 21 )

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-10
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 1  RRGYAAVAADRVVAKSG-------SKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEI 60
          +RGYAA AA   V+  G       +  KK+  E ST +K++WVPDP TGYYRPE  ++EI
Sbjct: 6  KRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEEST-QKISWVPDPKTGYYRPETGSNEI 65

Query: 61 DPVDLRAMLLKPRR 68
          D  +LRA LL  ++
Sbjct: 66 DAAELRAALLNNKQ 78

BLAST of MC08g1686 vs. TAIR 10
Match: AT4G15910.1 (drought-induced 21 )

HSP 1 Score: 57.0 bits (136), Expect = 7.2e-09
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 0

Query: 1   RRGYAAVAADRVVA---KSGSKT----KKEEAERSTEEKMAWVPDPVTGYYRPENCADEI 60
           RR Y A + +   A   K GS      K E+     E + AW PDPVTGYYRP N A EI
Sbjct: 28  RRSYVATSQNVTAAGLSKGGSTRVMVGKMEQRGLDQEAESAWGPDPVTGYYRPSNRAAEI 87

Query: 61  DPVDLRAMLLKPRRK 69
           DP +LR +LLK + K
Sbjct: 88  DPAELRELLLKNKAK 102

BLAST of MC08g1686 vs. TAIR 10
Match: AT3G53770.2 (late embryogenesis abundant 3 (LEA3) family protein )

HSP 1 Score: 50.8 bits (120), Expect = 5.1e-07
Identity = 22/54 (40.74%), Postives = 35/54 (64.81%), Query Frame = 0

Query: 18  SKTKKEEAERSTEEKMAWVPDPVTGYYRPENCADEIDPVDLRAMLLKPRRKIVN 72
           +KT + + +    E++ W+PDP TGYYRP+N A E+D V+LR++     +K  N
Sbjct: 69  AKTSQVQGKMMRGEELWWMPDPQTGYYRPDNFARELDAVELRSLHFNKNQKTEN 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SRX64.8e-1046.27Late embryogenis abundant protein 2 OS=Arabidopsis thaliana OX=3702 GN=LEA2 PE=2... [more]
Q93WF63.1e-0948.65Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=... [more]
Q396444.1e-0950.00Late embryogenesis abundant protein Lea5 OS=Citrus sinensis OX=2711 GN=LEA5 PE=2... [more]
P465223.5e-0846.75Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum OX=3635 GN=LEA5... [more]
P465214.5e-0845.45Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum OX=3635 GN=LEA5... [more]
Match NameE-valueIdentityDescription
XP_022155320.14.82e-41100.00late embryogenis abundant protein 2-like [Momordica charantia][more]
XP_022155319.12.25e-2270.31protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Momordica charantia][more]
XP_023528769.13.33e-1963.01protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Cucurbita pepo subsp.... [more]
KAG6606955.13.42e-1970.31Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial, partial [Cucurbita argyros... [more]
XP_038903721.15.40e-1970.31protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1DM522.33e-41100.00late embryogenis abundant protein 2-like OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1DPX01.09e-2270.31protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Momordica charantia... [more]
A0A6J1F2C16.53e-1963.01protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita moschata ... [more]
A0A6J1GAX23.76e-1865.63protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita moschata ... [more]
A0A6J1GC451.05e-1764.71protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like OS=Cucurbita moschata ... [more]
Match NameE-valueIdentityDescription
AT1G02820.13.4e-1146.27Late embryogenesis abundant 3 (LEA3) family protein [more]
AT4G02380.12.2e-1048.65senescence-associated gene 21 [more]
AT4G02380.25.0e-1047.30senescence-associated gene 21 [more]
AT4G15910.17.2e-0946.67drought-induced 21 [more]
AT3G53770.25.1e-0740.74late embryogenesis abundant 3 (LEA3) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPFAMPF03242LEA_3coord: 1..63
e-value: 1.6E-22
score: 80.0
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPANTHERPTHR33509LATE EMBRYOGENIS ABUNDANT PROTEIN 2-RELATEDcoord: 1..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR33509:SF34LATE EMBRYOGENIS ABUNDANT PROTEIN 41coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g1686.1MC08g1686.1mRNA