MC08g0974 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g0974
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2
Location	MC08: 7822551 .. 7824950 (-)
RNA-Seq Expression	MC08g0974
Synteny	MC08g0974

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATACCCGGTGTTTGGCTCCGCCGACTCTCGACGGAGACGGCGATGTCGACGCTCTCAGCCGGATGCCTTATCGCTTGCTTCCTCGCCAAGACCTCATTGATCTCTTCGTCTTGAAGCTCGATGGCTCTGTATTTGGTGATTCCTTCGCCGTTCTCGACCTTTTCTTTTTTCTTCTTTTCTGTCCATCACACCTGAGAACTCTGAATTAGATGATTTTCGCTTTTGCTCGAAAATTACTATCGGTCTCTTTTTTCGAGATGAGAGGTGAAAGTGCTTAAACGTAACTTGCTTAAGAGAATAGAATTGAATACTTTCTTGAGAACACTGTGCCGGAAAGCATTTAAAATGCGCGCCTAATTAAAGTGTTATGATATAGAAAAGTACAACATCGCGAAAATTAACTCTCGCGATTCCTCCACATTATTCCCCATTTTCCCCTGTTTATCGCTGTGGAGGACAAACGTACCAAGAAAATAACCTAAATTTTGATGCTACTTGCTCCCACTATCGTGTTAATTATAAATTTAATTGATTCTGTATGATTTGGCGCTCCAGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGAACTCAAACGAGCGATAGAGGAAGTTTTTGTTTCACCCGGGGGGGATGAACATTGCAAGATTACATGGTAGTTTTGACACTAATGATTTTTTTTTTTTTGTTATGAGATTCTTGATTAATTTCGCTACCAATGATTTTGTTTTTGTTCCTTTTGGAGCTTAGTAAGTTTATTTTAGTTTTTTCGTGAATTTTTCTATTTCAACTATTAAATTTTATTGCTCTTAGGTCACTTGTATGGGGACATTTCTGTTTATGTTACGAAGGCCAAAATCTTATCGATGACAAAGCATGCATTAGAGTTTTTGGCATTAAAGATGGTGATCAGGTTTGTTGTGATGTGTCTCTTGCTTGTGCATTGAGTTAAATGCTGCTGCTCTCTAGCTTTTAATGTGTTGCTCTGTTATGTGACGCAGCTTCAGTTTATTAGGCATATGTCCATCAGCTGTTTACCAGTTAAGAGAGATAGAAAGAGCCAAACTGTTTCTTGCAGAACAGTGTTGTTGTAAGTTGTTCTCTCTAATGACTGCAGTTGCACATGAGTTTGTTTCAAGTAAAACAGTGTCGTTTTAGGTTGTTCTTTCTAATGGCTGCAGGAGCACATGTATGCCACTTCACGGGCAGATACCATTATAACTTCTGAACACAATGCTCAAAAGCTTACTTTAGGTTGTATCCATTACCAAGAAAGCAATGCACGTTGATAGAGATAGAGTCGGGAAAAAAAAGAAAAAAAAAAAAGATAAGCCCAATAAATAAGGACACCTGTCTATTAGTGCTTGTTACATGACATCTTTCACCAATTTGTGAAATATGGTTATTTCCACTGATTAAAAAATTGTACAAAGCTTCCTCCGAAAAAAATTGTACAAAAACCTTTAAATAGAAAGTTCATACAATGGGTGAAACCAAAAAACTGAAAAATAACTAAAATTCAATACACATGACACTATTTAAACTAAACATAATTAAACCATAACTATTTCTAACTGCTTAATACTTATTCAGATAACAGTTTTGAGTTCCATTGAGTTGGTGGCAGTCTGAAAAGTAAGAAAAATGTACAATTTGGAGGGCCTCCCCTGGGTTTGTGGAGGGGAAGTCAACATATTGCTTTGTAAATTCTTCAACTTTTTTTTAGAATCATATCCAAGATCGATTTTCCAGTGTTTCCACTTTACGTTGTCAGAAGTGCTGTTATCATATGTTAGGATCTACATTCACCATCCGATTAGCCTTTTATCATCTAGGACTATCATTCTCAATATACAATTTTTAATATTGAACAACTTTGTTCCAATATACAATTTTTAATATTGAACAATTTTATTCCTTTTCATTATCTTAATGAGAAGTTTGTATCGGGTTAAAAAAAATATATACAATTTTTAGTAACACGAAAACGTACTTCAATAGGCATATTTCAACAAACGGTGGGGAAGGCAAATATCTCAATATTTGCTTTTTTCTCCGCACCTTGATCCATGGTTTATTCTTGTACTGTTTACTCTGTTAGATAGTAAACTTATACTTCCTGTAAAAGTCTGCCACCAGAATCAAAATGTGTTGAAGACAATCAACTAGCCGGTCCAGATGATCCCGAGACTTATGAGGAAGTTCACGAGGATGGTTCCAATCAGGAGGAAGTTCCTATCCCTGGATTTCATCTAGCAAATTTCTTCAGAGGACGGTTCTTATATTCCAGGATATGGGGTTTTCTTAAGAGTGCATCAGAAGGCAGGAATCGGCCTTCTGGCTTCGGCATTACT

mRNA sequence

GAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATACCCGGTGTTTGGCTCCGCCGACTCTCGACGGAGACGGCGATGTCGACGCTCTCAGCCGGATGCCTTATCGCTTGCTTCCTCGCCAAGACCTCATTGATCTCTTCGTCTTGAAGCTCGATGGCTCTGTATTTGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGAACTCAAACGAGCGATAGAGGAAGTTTTTGTTTCACCCGGGGGGGATGAACATTGCAAGATTACATGGTCACTTGTATGGGGACATTTCTGTTTATGTTACGAAGGCCAAAATCTTATCGATGACAAAGCATGCATTAGAGTTTTTGGCATTAAAGATGGTGATCAGCTTCAGTTTATTAGGCATATGTCCATCAGCTGTTTACCAGTTAAGAGAGATAGAAAGAGCCAAACTGTTTCTTGCAGAACAGTGTTGTTTCTGCCACCAGAATCAAAATGTGTTGAAGACAATCAACTAGCCGGTCCAGATGATCCCGAGACTTATGAGGAAGTTCACGAGGATGGTTCCAATCAGGAGGAAGTTCCTATCCCTGGATTTCATCTAGCAAATTTCTTCAGAGGACGGTTCTTATATTCCAGGATATGGGGTTTTCTTAAGAGTGCATCAGAAGGCAGGAATCGGCCTTCTGGCTTCGGCATTACT

Coding sequence (CDS)

GAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATACCCGGTGTTTGGCTCCGCCGACTCTCGACGGAGACGGCGATGTCGACGCTCTCAGCCGGATGCCTTATCGCTTGCTTCCTCGCCAAGACCTCATTGATCTCTTCGTCTTGAAGCTCGATGGCTCTGTATTTGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGAACTCAAACGAGCGATAGAGGAAGTTTTTGTTTCACCCGGGGGGGATGAACATTGCAAGATTACATGGTCACTTGTATGGGGACATTTCTGTTTATGTTACGAAGGCCAAAATCTTATCGATGACAAAGCATGCATTAGAGTTTTTGGCATTAAAGATGGTGATCAGCTTCAGTTTATTAGGCATATGTCCATCAGCTGTTTACCAGTTAAGAGAGATAGAAAGAGCCAAACTGTTTCTTGCAGAACAGTGTTGTTTCTGCCACCAGAATCAAAATGTGTTGAAGACAATCAACTAGCCGGTCCAGATGATCCCGAGACTTATGAGGAAGTTCACGAGGATGGTTCCAATCAGGAGGAAGTTCCTATCCCTGGATTTCATCTAGCAAATTTCTTCAGAGGACGGTTCTTATATTCCAGGATATGGGGTTTTCTTAAGAGTGCATCAGAAGGCAGGAATCGGCCTTCTGGCTTCGGCATTACT

Protein sequence

ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVFGVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGIT

Homology

[Close]

BLAST of MC08g0974 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 7.8e-09
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 52  VLKLDGSVFGVRVARNGTVAELKRAIEEVF----VSPGGDEHCKITWSLVWGHFCLCYEG 111
           V K+DG V  V V +N TV +LK+AI+          GG +H  I+WS VW  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQH--ISWSYVWRTYHLTSAG 95

Query: 112 QNLIDDKACIRVFGIKDGDQLQFIRHM 135
           + L +D+  +R +GI++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of MC08g0974 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.8e-09
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 52  VLKLDGSVFGVRVARNGTVAELKRAIEEVF----VSPGGDEHCKITWSLVWGHFCLCYEG 111
           V K+DG V  V V +N TV +LK+AI+          GG +H  I+WS VW  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQH--ISWSYVWRTYHLTSAG 95

Query: 112 QNLIDDKACIRVFGIKDGDQLQFIRHM 135
           + L +D+  +R +GI++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of MC08g0974 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-08
Identity = 31/87 (35.63%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 52  VLKLDGSVFGVRVARNGTVAELKRAIEEVF----VSPGGDEHCKITWSLVWGHFCLCYEG 111
           V K+DG V  V V ++ TV +LK+AI+          GG +H  I+WS VW  + L   G
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQH--ISWSYVWRTYHLTSAG 104

Query: 112 QNLIDDKACIRVFGIKDGDQLQFIRHM 135
           + L +D+  +R +GI++ D++ FI+ +
Sbjct: 105 EKLTEDRKKLRDYGIRNRDEVSFIKKL 129

[Close]

BLAST of MC08g0974 vs. NCBI nr
Match: XP_022153470.1 (uncharacterized protein LOC111020973 isoform X1 [Momordica charantia] >XP_022153471.1 uncharacterized protein LOC111020973 isoform X1 [Momordica charantia])

HSP 1 Score: 490 bits (1261), Expect = 5.78e-175
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 60
           ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF
Sbjct: 8   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 67

Query: 61  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 120
           GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF
Sbjct: 68  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 127

Query: 121 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 180
           GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE
Sbjct: 128 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 187

Query: 181 EVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGIT 232
           EVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGIT
Sbjct: 188 EVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGIT 239

[Close]

BLAST of MC08g0974 vs. NCBI nr
Match: XP_022948349.1 (uncharacterized protein LOC111452053 [Cucurbita moschata] >KAG7036517.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394 bits (1013), Expect = 3.81e-137
Identity = 191/233 (81.97%), Postives = 205/233 (87.98%), Query Frame = 0


Query: 1   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 60
           ERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFVLKLDGSVF
Sbjct: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68

Query: 61  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 120
           GVRVARNGTVA+LK+AIEEVF SPG  EHCKITWSLVWGHFCLCYEG+ LIDDKA IRV 
Sbjct: 69  GVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128

Query: 121 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 180
           GIKDGDQLQFIRHMSI+CLP+KRDRK+Q V C+TVLFLP ESK +E NQ+AG  DP  YE
Sbjct: 129 GIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLFLPAESKSIEGNQVAGQGDPVNYE 188

Query: 181 EVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPS-GFGIT 232
            VHEDGSNQEE+P+ GF LAN FRGR LYS+IWGF +SASEGRNRPS GF IT
Sbjct: 189 -VHEDGSNQEEIPMAGFQLANIFRGRVLYSKIWGFFRSASEGRNRPSSGFCIT 240

[Close]

BLAST of MC08g0974 vs. NCBI nr
Match: XP_023525469.1 (uncharacterized protein LOC111789062 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392 bits (1008), Expect = 2.20e-136
Identity = 189/233 (81.12%), Postives = 204/233 (87.55%), Query Frame = 0


Query: 1   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 60
           ERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFVLKLDGSVF
Sbjct: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68

Query: 61  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 120
           GVRVARNGTVA+LK+AIEEVF SPG  EHCKITWSLVWGHFCLCYEG+ LIDDKA IRV 
Sbjct: 69  GVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128

Query: 121 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 180
           GIKDGDQLQF+RHMSI+CLP+KRDRK+Q V C+TVLFLP E K +E NQ+AG  DP  YE
Sbjct: 129 GIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLFLPAEPKSIEGNQVAGQGDPVNYE 188

Query: 181 EVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPS-GFGIT 232
            VHEDGSNQEE+P+ GF LAN FRGR LYS+IWGF +SASEGRNRPS GF IT
Sbjct: 189 -VHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPSAGFCIT 240

[Close]

BLAST of MC08g0974 vs. NCBI nr
Match: XP_022998358.1 (uncharacterized protein LOC111493024 [Cucurbita maxima])

HSP 1 Score: 392 bits (1006), Expect = 4.44e-136
Identity = 190/233 (81.55%), Postives = 204/233 (87.55%), Query Frame = 0


Query: 1   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 60
           ERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFVLKLDGSVF
Sbjct: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68

Query: 61  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 120
           GVRVARNGTVA+LK+AIEEVF SP   EHCKITWSLVWGHFCLCYEG+ LIDDKA IRV 
Sbjct: 69  GVRVARNGTVADLKQAIEEVFDSPRASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128

Query: 121 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 180
           GIKDGDQLQFIRHMSI+CLP+KRDRK+Q V C+TVLFLP ESK +E NQ+AG  DP  YE
Sbjct: 129 GIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLFLPAESKSIEGNQVAGQGDPVNYE 188

Query: 181 EVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPS-GFGIT 232
            VHEDGSNQEE+P+ GF LAN FRGR LYS+IWGF +SASEGRNRPS GF IT
Sbjct: 189 -VHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPSSGFCIT 240

[Close]

BLAST of MC08g0974 vs. NCBI nr
Match: XP_038904269.1 (uncharacterized protein LOC120090621 isoform X1 [Benincasa hispida])

HSP 1 Score: 375 bits (964), Expect = 1.28e-129
Identity = 187/237 (78.90%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 1   ERSKIGNLWRFNRFIDTRCLAPP-TLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSV 60
           ER+KIGNLWRF+RF+D RCLAPP TLD D D  ALSR PYRLLPRQDLIDLFVLKLDGSV
Sbjct: 9   ERTKIGNLWRFSRFVDYRCLAPPPTLDIDADFRALSRRPYRLLPRQDLIDLFVLKLDGSV 68

Query: 61  FGVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRV 120
           FG+RV+RN TVA+LKRAIEEVF SPGG EHCKITWSL+WGHFCLCYEG+ LIDDK CIRV
Sbjct: 69  FGIRVSRNATVADLKRAIEEVFDSPGGSEHCKITWSLIWGHFCLCYEGEKLIDDKTCIRV 128

Query: 121 FGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETY 180
           FGIKDGDQLQF+RHMSI+CLPVKRD K+Q+VSC+T+L L PESK VE+NQ AG DD E Y
Sbjct: 129 FGIKDGDQLQFLRHMSINCLPVKRDGKNQSVSCKTMLSLSPESKSVEENQPAGQDDLENY 188

Query: 181 EEVHEDGSNQEEVPI---PGFHLANFFRGRFLYSRIWGFLKSASEGRNRPS-GFGIT 232
           + VH  GSNQEEV      GF LANFFRGR LYSRIWGF KSASEGRNRPS GF IT
Sbjct: 189 Q-VHRGGSNQEEVVSMGRAGFQLANFFRGRVLYSRIWGFRKSASEGRNRPSSGFRIT 244

[Close]

BLAST of MC08g0974 vs. ExPASy TrEMBL
Match: A0A6J1DGY1 (uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020973 PE=4 SV=1)

HSP 1 Score: 490 bits (1261), Expect = 2.80e-175
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 60
           ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF
Sbjct: 8   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 67

Query: 61  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 120
           GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF
Sbjct: 68  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 127

Query: 121 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 180
           GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE
Sbjct: 128 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 187

Query: 181 EVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGIT 232
           EVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGIT
Sbjct: 188 EVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGIT 239

[Close]

BLAST of MC08g0974 vs. ExPASy TrEMBL
Match: A0A6J1G9M5 (uncharacterized protein LOC111452053 OS=Cucurbita moschata OX=3662 GN=LOC111452053 PE=4 SV=1)

HSP 1 Score: 394 bits (1013), Expect = 1.85e-137
Identity = 191/233 (81.97%), Postives = 205/233 (87.98%), Query Frame = 0


Query: 1   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 60
           ERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFVLKLDGSVF
Sbjct: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68

Query: 61  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 120
           GVRVARNGTVA+LK+AIEEVF SPG  EHCKITWSLVWGHFCLCYEG+ LIDDKA IRV 
Sbjct: 69  GVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128

Query: 121 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 180
           GIKDGDQLQFIRHMSI+CLP+KRDRK+Q V C+TVLFLP ESK +E NQ+AG  DP  YE
Sbjct: 129 GIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLFLPAESKSIEGNQVAGQGDPVNYE 188

Query: 181 EVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPS-GFGIT 232
            VHEDGSNQEE+P+ GF LAN FRGR LYS+IWGF +SASEGRNRPS GF IT
Sbjct: 189 -VHEDGSNQEEIPMAGFQLANIFRGRVLYSKIWGFFRSASEGRNRPSSGFCIT 240

[Close]

BLAST of MC08g0974 vs. ExPASy TrEMBL
Match: A0A6J1KGI2 (uncharacterized protein LOC111493024 OS=Cucurbita maxima OX=3661 GN=LOC111493024 PE=4 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 2.15e-136
Identity = 190/233 (81.55%), Postives = 204/233 (87.55%), Query Frame = 0


Query: 1   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 60
           ERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFVLKLDGSVF
Sbjct: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68

Query: 61  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 120
           GVRVARNGTVA+LK+AIEEVF SP   EHCKITWSLVWGHFCLCYEG+ LIDDKA IRV 
Sbjct: 69  GVRVARNGTVADLKQAIEEVFDSPRASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128

Query: 121 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 180
           GIKDGDQLQFIRHMSI+CLP+KRDRK+Q V C+TVLFLP ESK +E NQ+AG  DP  YE
Sbjct: 129 GIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLFLPAESKSIEGNQVAGQGDPVNYE 188

Query: 181 EVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPS-GFGIT 232
            VHEDGSNQEE+P+ GF LAN FRGR LYS+IWGF +SASEGRNRPS GF IT
Sbjct: 189 -VHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPSSGFCIT 240

[Close]

BLAST of MC08g0974 vs. ExPASy TrEMBL
Match: A0A1S3BY00 (uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494657 PE=4 SV=1)

HSP 1 Score: 352 bits (902), Expect = 1.65e-120
Identity = 170/230 (73.91%), Postives = 190/230 (82.61%), Query Frame = 0


Query: 1   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 60
           +R+KI NLWRF RFID RC APPTLD + D DALSR PYRLLPRQDLIDLFVLKLDGSVF
Sbjct: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFVLKLDGSVF 68

Query: 61  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 120
           GVRV+RN TVA+LKRAIEEVF SPGG EH KITWSL+WGHFCLCYEG+ L DDKACIR +
Sbjct: 69  GVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTDDKACIRGY 128

Query: 121 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 180
            IKDGDQLQFIRHMSI+CL +K+DRK+QTV C+T+LF  PESK VE+NQ  G DD + Y+
Sbjct: 129 SIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVEENQADGRDDIKDYQ 188

Query: 181 EVHEDGSNQEEVPIPG---FHLANFFRGRFLYSRIWGFLKSASEGRNRPS 227
            VH D SNQEEV       F L+NFF+GR LYSR+WGF KSASEGRNR S
Sbjct: 189 -VHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRAS 237

[Close]

BLAST of MC08g0974 vs. ExPASy TrEMBL
Match: A0A0A0KTJ1 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470 PE=4 SV=1)

HSP 1 Score: 350 bits (897), Expect = 9.52e-120
Identity = 169/230 (73.48%), Postives = 190/230 (82.61%), Query Frame = 0


Query: 1   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 60
           +R+KI NLWRF RFID RC APPTLD D D DALSR PYRLLPRQD IDLFVLKLDGSVF
Sbjct: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVF 68

Query: 61  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 120
           G+RV+RN TVA+LKRAIE+VF SPGG EH KITWSL+WGHFCLCYEG+ LIDDK CI+ +
Sbjct: 69  GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGY 128

Query: 121 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYE 180
           GIKDGDQLQFIRHMSI+CL +K+DRK+QTV C+ +LFL PESK VE+NQ  G DD + Y+
Sbjct: 129 GIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFLSPESKAVEENQADGQDDFKDYQ 188

Query: 181 EVHEDGSNQEEVPI---PGFHLANFFRGRFLYSRIWGFLKSASEGRNRPS 227
            VH D SN+EEV      GF LAN F+GR LYSRIWGF KSASEGRNR S
Sbjct: 189 -VHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRAS 237

[Close]

BLAST of MC08g0974 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-36
Identity = 87/221 (39.37%), Postives = 124/221 (56.11%), Query Frame = 0


Query: 15  IDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVFGVRVARNGTVAELK 74
           ID R L+   L+  G +    R  Y  LP Q  I L V+KL+GS+F V VA++ +VAELK
Sbjct: 21  IDPRFLSSFALNDGGSISG-RRSSYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELK 80

Query: 75  RAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHM 134
           RA+E+VF     + H  I+WS VWGHFCLCY  Q L++DK  IR  G+ DGDQL F+RH+
Sbjct: 81  RAVEQVFTISPLEGHGMISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHL 140

Query: 135 SISCLPVKRDRKSQTVSCRTVLFLPPESKC----VEDNQLAGPDDPETYEEVHEDGSNQE 194
           SI   P+  +++S++ SC+  L L   S      +++    G DD    E+ +     Q+
Sbjct: 141 SIDHSPM--NKRSKSPSCKRYLELDVSSIVNEIQIQNQNQNGVDD--VAEKCYPGA--QD 200

Query: 195 EVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGI 232
           E+P     L N  +G   Y+  WG  +   E R+ PS F +
Sbjct: 201 ELPAAESRLVNLIKGWLPYAGRWGVSRKGPECRSGPSRFSL 234

[Close]

BLAST of MC08g0974 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 9.8e-23
Identity = 59/125 (47.20%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 31  VDALSR---MPYRLLPRQDLIDLFVLKLDGSVFGVRVARNGTVAELKRAIEEVFVSPGGD 90
           +D L R     Y  +P ++ I L VLKLDGS FG++V +  TV ELK A+E  F      
Sbjct: 19  IDGLPRRRSFNYNQMP-EEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPIS 78

Query: 91  EHCKITWSLVWGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISC-LPVKRDRK 150
              KI+W  VWG FCL YE + LI++   +  FGIKDGDQL+FIRH+S  C L VK   K
Sbjct: 79  GPGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHKSK 138

Query: 151 SQTVS 152
           +  VS
Sbjct: 139 TPRVS 142

[Close]

BLAST of MC08g0974 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-21
Identity = 56/119 (47.06%), Postives = 71/119 (59.66%), Query Frame = 0


Query: 39  YRLLPRQDLIDLFVLKLDGSVFGVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVW 98
           Y  LP +  I L VLKLDGS F V V  + TV +LK AIE  F         KI+WS VW
Sbjct: 11  YDKLPNEP-IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWSHVW 70

Query: 99  GHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVK-RDRKSQTVSCRTVL 157
           GHFCLC+ GQ LI D  CI  +G+KDGD+++F  H+S + +  K   RKS+  +   VL
Sbjct: 71  GHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQKNLERVL 128

[Close]

BLAST of MC08g0974 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.9e-19
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 45  QDLIDLFVLKLDGSVFGVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLC 104
           ++ I L VLKLDGS F   V +  TV ELK A+E  F         KI+W  VWG FCL 
Sbjct: 3   EEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPGKISWPHVWGQFCLS 62

Query: 105 YEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISC-LPVKRDRKSQTVS 152
           YE + LI++   +  FGIKDGDQL+FIRH+S  C L VK   K+  VS
Sbjct: 63  YEDKRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHKSKTPRVS 107

The following BLAST results are available for this feature:

BLAST of MC08g0974 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ZBQ4	7.8e-09	36.78	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q8VIK1	7.8e-09	36.78	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q9BV90	3.0e-08	35.63	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]

BLAST of MC08g0974 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153470.1	5.78e-175	100.00	uncharacterized protein LOC111020973 isoform X1 [Momordica charantia] >XP_022153...	[more]
XP_022948349.1	3.81e-137	81.97	uncharacterized protein LOC111452053 [Cucurbita moschata] >KAG7036517.1 U11/U12 ...	[more]
XP_023525469.1	2.20e-136	81.12	uncharacterized protein LOC111789062 [Cucurbita pepo subsp. pepo]	[more]
XP_022998358.1	4.44e-136	81.55	uncharacterized protein LOC111493024 [Cucurbita maxima]	[more]
XP_038904269.1	1.28e-129	78.90	uncharacterized protein LOC120090621 isoform X1 [Benincasa hispida]	[more]

BLAST of MC08g0974 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DGY1	2.80e-175	100.00	uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1G9M5	1.85e-137	81.97	uncharacterized protein LOC111452053 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A6J1KGI2	2.15e-136	81.55	uncharacterized protein LOC111493024 OS=Cucurbita maxima OX=3661 GN=LOC111493024...	[more]
A0A1S3BY00	1.65e-120	73.91	uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KTJ1	9.52e-120	73.48	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470...	[more]

BLAST of MC08g0974 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80060.1	2.7e-36	39.37	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	9.8e-23	47.20	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	4.1e-21	47.06	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	2.9e-19	49.07	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 44..142 e-value: 1.4E-30 score: 107.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..189
None	No IPR available	PANTHER	PTHR14942:SF9	OS02G0188500 PROTEIN	coord: 30..229
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 49..134 e-value: 2.9E-22 score: 78.5
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 48..133 e-value: 3.48169E-32 score: 110.686
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 30..229
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 45..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g0974.1	MC08g0974.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005689	U12-type spliceosomal complex