MC08g0544 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g0544
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Phytosulfokine-beta
Location	MC08: 4434577 .. 4435125 (+)
RNA-Seq Expression	MC08g0544
Synteny	MC08g0544

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACTCCTCGGCGTATAAATAGAAGAAGAAAAGCGCTATAAACTGTAGCCAGAGGCGTTGATAGCATCTCCAAAACTCTCTTTCTATCTCTCTCGTCACTATACAGCGATTCGGTTTCCATTGTCTCGGCTTTGATCTGTATGAGAGCGGAGCACGATAATCATCCATTGGCAATCAAATTCAAGCAACAATTCCTGGCGAGAATGTCGAAGCAGCTCGCAGCTCTGTTCGCCATTGCAGCCCTTCTTACAATGTCCGTTCTGTTGTCTTCCCAAGCTCGTCCAATAACCACATTCAGCGCCAATTCTGTCGAAATCGCGCATCCGGTAACCTAAAATTCCAAATCCACTGTTCTAGTTTCCGATCGATTCTTAAATCAATTTCATCGTTCTATGATTAATTTTGTGTCTTTAAACACCGGTGGTTCAGGATTCGAAAGATCGGGTTCATGAAGACGGATGCGATGAACGAGCGGAAGATCAGGACTGCCTGAATAGAAGAACATTAGAGGCTCATACCGATTATATCTATTCAGGTGAGACCAAGCCA

mRNA sequence

CGACTCCTCGGCGTATAAATAGAAGAAGAAAAGCGCTATAAACTGTAGCCAGAGGCGTTGATAGCATCTCCAAAACTCTCTTTCTATCTCTCTCGTCACTATACAGCGATTCGGTTTCCATTGTCTCGGCTTTGATCTGTATGAGAGCGGAGCACGATAATCATCCATTGGCAATCAAATTCAAGCAACAATTCCTGGCGAGAATGTCGAAGCAGCTCGCAGCTCTGTTCGCCATTGCAGCCCTTCTTACAATGTCCGTTCTGTTGTCTTCCCAAGCTCGTCCAATAACCACATTCAGCGCCAATTCTGTCGAAATCGCGCATCCGGATTCGAAAGATCGGGTTCATGAAGACGGATGCGATGAACGAGCGGAAGATCAGGACTGCCTGAATAGAAGAACATTAGAGGCTCATACCGATTATATCTATTCAGGTGAGACCAAGCCA

Coding sequence (CDS)

ATGAGAGCGGAGCACGATAATCATCCATTGGCAATCAAATTCAAGCAACAATTCCTGGCGAGAATGTCGAAGCAGCTCGCAGCTCTGTTCGCCATTGCAGCCCTTCTTACAATGTCCGTTCTGTTGTCTTCCCAAGCTCGTCCAATAACCACATTCAGCGCCAATTCTGTCGAAATCGCGCATCCGGATTCGAAAGATCGGGTTCATGAAGACGGATGCGATGAACGAGCGGAAGATCAGGACTGCCTGAATAGAAGAACATTAGAGGCTCATACCGATTATATCTATTCAGGTGAGACCAAGCCA

Protein sequence

MRAEHDNHPLAIKFKQQFLARMSKQLAALFAIAALLTMSVLLSSQARPITTFSANSVEIAHPDSKDRVHEDGCDERAEDQDCLNRRTLEAHTDYIYSGETKP

Homology

[Close]

BLAST of MC08g0544 vs. ExPASy Swiss-Prot
Match: O81003 (Phytosulfokines 2 OS=Arabidopsis thaliana OX=3702 GN=PSK2 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.4e-04
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 32  IAALLTMSVLLSS----QARPITTFSANSVEIAHPDSKDRVHEDGCDER--------AED 91
           ++ALLT+++LL S     ARP    S +    A P + ++  E   D+         A+D
Sbjct: 4   VSALLTIALLLCSTLMCTARPEPAISISITTAADPCNMEKKIEGKLDDMHMVDENCGADD 63

Query: 92  QDCLNRRTLEAHTDYIYSGETK 102
           +DCL RRTL AHTDYIY+ + K
Sbjct: 64  EDCLMRRTLVAHTDYIYTQKKK 85

[Close]

BLAST of MC08g0544 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 9.7e-04
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 22  MSKQLAALFAIAALLTMSVLLSSQARPITTFSANSVEIAHPDSKDRVHEDGCDERAEDQD 81
           MS +   L  IA L ++S  L+  ARP+    A+S +  H    ++VH++ C E   +++
Sbjct: 1   MSSKAITLLLIALLFSLS--LAQAARPLQ--PADSTKSVHV-IPEKVHDEAC-EGVGEEE 60

Query: 82  CLNRRTLEAHTDYIYSGETKP 103
           CL RRTL AH DYIY+ +  P
Sbjct: 61  CLMRRTLTAHVDYIYTQDHNP 75

[Close]

BLAST of MC08g0544 vs. NCBI nr
Match: XP_022131649.1 (uncharacterized protein LOC111004777 [Momordica charantia])

HSP 1 Score: 198 bits (503), Expect = 3.38e-61
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MRAEHDNHPLAIKFKQQFLARMSKQLAALFAIAALLTMSVLLSSQARPITTFSANSVEIA 60
           MRAEHDNHPLAIKFKQQFLARMSKQLAALFAIAALLTMSVLLSSQARPITTFSANSVEIA
Sbjct: 1   MRAEHDNHPLAIKFKQQFLARMSKQLAALFAIAALLTMSVLLSSQARPITTFSANSVEIA 60

Query: 61  HPDSKDRVHEDGCDERAEDQDCLNRRTLEAHTDYIYSGETKP 102
           HPDSKDRVHEDGCDERAEDQDCLNRRTLEAHTDYIYSGETKP
Sbjct: 61  HPDSKDRVHEDGCDERAEDQDCLNRRTLEAHTDYIYSGETKP 102

[Close]

BLAST of MC08g0544 vs. NCBI nr
Match: XP_023546620.1 (phytosulfokines-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 1.65e-18
Identity = 52/81 (64.20%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 22  MSKQLAALFAIAALLTMSVLLSSQARPITTFSANSVEIAHPDSKDRVHEDGCDERAEDQD 81
           MSK LAALF IAALLTMS    S+ARPI T +A S  IA+P   + V +DG  E  E  D
Sbjct: 1   MSK-LAALFTIAALLTMS----SEARPIATLTATSAVIANPVVAEEVRKDGPCEGREKDD 60

Query: 82  CLNRRTLEAHTDYIYSGETKP 102
           CL RRTLEAHTDYIYSG+TKP
Sbjct: 61  CLIRRTLEAHTDYIYSGDTKP 76

[Close]

BLAST of MC08g0544 vs. NCBI nr
Match: KAG6598323.1 (Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029293.1 Phytosulfokine [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.9 bits (185), Expect = 1.17e-15
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 22  MSKQLAALFAIAALLTMSVLL-SSQARPITTFSANSVEIAHPDSKDRVHEDGCDERAEDQ 81
           MSK LAALF IAAL++MS++L SS+ARPITT +A S  IA+P     V E+ C +     
Sbjct: 1   MSK-LAALFTIAALVSMSLMLPSSEARPITTLTATSAVIANPVI---VSEEVCKD----- 60

Query: 82  DCLNRRTLEAHTDYIYSGETKP 102
           DCL RRTLEAHTDYIYSG+TKP
Sbjct: 61  DCLIRRTLEAHTDYIYSGDTKP 73

[Close]

BLAST of MC08g0544 vs. NCBI nr
Match: XP_022132249.1 (phytosulfokines-like [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 8.05e-15
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 25  QLAALFAIAAL-LTMSVLLSSQARPITTFSANSVEIAHPDSKDRVHEDGCDERAEDQDCL 84
           +LAALF I AL LTMS+L SS+ARP     A SV+I +P  ++ V+ D CDER  D+DCL
Sbjct: 3   KLAALFTIVALVLTMSLLTSSEARPTI---ATSVKIVNPVPEETVNGDICDERNPDEDCL 62

Query: 85  NRRTLEAHTDYIYSGETKP 102
            RRTL AHTDYIY+ ETKP
Sbjct: 63  FRRTLTAHTDYIYT-ETKP 77

[Close]

BLAST of MC08g0544 vs. NCBI nr
Match: KAG6585714.1 (Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 3.43e-14
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 22  MSKQLAALFAIAALLTMSVLLSSQARPITTFSANSVE---IAHPDSKDRVHEDGCDERAE 81
           MSK L ALF++ AL+TMS+L SS+ARPI T +A S++   IAH    ++ H+D C E  E
Sbjct: 1   MSK-LVALFSVVALVTMSLLSSSEARPIATSTATSLDLNHIAHQVVSEKGHDDVC-EGGE 60

Query: 82  DQDCLNRRTLEAHTDYIYSGETK 101
            ++CL +RT+EAHTDYIY+ +TK
Sbjct: 61  TKECLAKRTVEAHTDYIYTDDTK 81

[Close]

BLAST of MC08g0544 vs. ExPASy TrEMBL
Match: A0A6J1BQV2 (Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111004777 PE=3 SV=1)

HSP 1 Score: 198 bits (503), Expect = 1.63e-61
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MRAEHDNHPLAIKFKQQFLARMSKQLAALFAIAALLTMSVLLSSQARPITTFSANSVEIA 60
           MRAEHDNHPLAIKFKQQFLARMSKQLAALFAIAALLTMSVLLSSQARPITTFSANSVEIA
Sbjct: 1   MRAEHDNHPLAIKFKQQFLARMSKQLAALFAIAALLTMSVLLSSQARPITTFSANSVEIA 60

Query: 61  HPDSKDRVHEDGCDERAEDQDCLNRRTLEAHTDYIYSGETKP 102
           HPDSKDRVHEDGCDERAEDQDCLNRRTLEAHTDYIYSGETKP
Sbjct: 61  HPDSKDRVHEDGCDERAEDQDCLNRRTLEAHTDYIYSGETKP 102

[Close]

BLAST of MC08g0544 vs. ExPASy TrEMBL
Match: A0A6J1BSJ0 (Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111005149 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.90e-15
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 25  QLAALFAIAAL-LTMSVLLSSQARPITTFSANSVEIAHPDSKDRVHEDGCDERAEDQDCL 84
           +LAALF I AL LTMS+L SS+ARP     A SV+I +P  ++ V+ D CDER  D+DCL
Sbjct: 3   KLAALFTIVALVLTMSLLTSSEARPTI---ATSVKIVNPVPEETVNGDICDERNPDEDCL 62

Query: 85  NRRTLEAHTDYIYSGETKP 102
            RRTL AHTDYIY+ ETKP
Sbjct: 63  FRRTLTAHTDYIYT-ETKP 77

[Close]

BLAST of MC08g0544 vs. ExPASy TrEMBL
Match: A0A445GB20 (Phytosulfokine-beta OS=Glycine soja OX=3848 GN=D0Y65_046780 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.77e-05
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 22  MSKQLAALFAIAALLTMSVLLSSQARP-ITTFSANSVEIAHPDSKDRVHEDGCDERAEDQ 81
           MSK +A LF +A LL+ +++ +S+  P +  FS+   ++A   +K+ ++E+ C+E  E+ 
Sbjct: 1   MSK-VATLFTLALLLSFNLIHASRLNPSLKVFSSLREDVAA--TKEEINEESCEEGTEE- 60

Query: 82  DCLNRRTLEAHTDYIYSGETKP 102
            CL RRTL AH DYIY+ + KP
Sbjct: 61  -CLIRRTLAAHVDYIYTQKHKP 77

[Close]

BLAST of MC08g0544 vs. ExPASy TrEMBL
Match: Q7PCB1 (Phytosulfokine-beta OS=Glycine max OX=3847 GN=PSK4 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.77e-05
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 22  MSKQLAALFAIAALLTMSVLLSSQARP-ITTFSANSVEIAHPDSKDRVHEDGCDERAEDQ 81
           MSK +A LF +A LL+ +++ +S+  P +  FS+   ++A   +K+ ++E+ C+E  E+ 
Sbjct: 1   MSK-VATLFTLALLLSFNLIHASRLNPSLKVFSSLREDVAA--TKEEINEESCEEGTEE- 60

Query: 82  DCLNRRTLEAHTDYIYSGETKP 102
            CL RRTL AH DYIY+ + KP
Sbjct: 61  -CLIRRTLAAHVDYIYTQKHKP 77

[Close]

BLAST of MC08g0544 vs. ExPASy TrEMBL
Match: A0A2I4HNM3 (Phytosulfokine-beta OS=Juglans regia OX=51240 GN=LOC109020036 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.85e-05
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 22  MSKQLAALFAIAALLTMSVLLSSQARPITTFS-ANSVEIAHPDSK-DRVHEDGCDERAED 81
           MS +L  L+ I  LL+ S+  ++ ARP  TFS    ++  H D + ++V E+ C E A  
Sbjct: 1   MSTKLGTLWVITLLLSYSLNFAT-ARPEPTFSDITPMKTQHRDDQLEKVMEERC-EGAGQ 60

Query: 82  QDCLNRRTLEAHTDYIYSGETKP 102
           +DCL RRTL AH DYIY+ + KP
Sbjct: 61  EDCLERRTLAAHIDYIYTQKNKP 81

[Close]

BLAST of MC08g0544 vs. TAIR 10
Match: AT2G22860.1 (phytosulfokine 2 precursor )

HSP 1 Score: 45.4 bits (106), Expect = 3.1e-05
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 32  IAALLTMSVLLSS----QARPITTFSANSVEIAHPDSKDRVHEDGCDER--------AED 91
           ++ALLT+++LL S     ARP    S +    A P + ++  E   D+         A+D
Sbjct: 4   VSALLTIALLLCSTLMCTARPEPAISISITTAADPCNMEKKIEGKLDDMHMVDENCGADD 63

Query: 92  QDCLNRRTLEAHTDYIYSGETK 102
           +DCL RRTL AHTDYIY+ + K
Sbjct: 64  EDCLMRRTLVAHTDYIYTQKKK 85

[Close]

BLAST of MC08g0544 vs. TAIR 10
Match: AT3G49780.1 (phytosulfokine 4 precursor )

HSP 1 Score: 41.2 bits (95), Expect = 5.8e-04
Identity = 25/78 (32.05%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 25  QLAALFAIAALLTMSVLLSSQARPITTFSANSVEIAHPDSKDRVHEDGCDERAEDQDCLN 84
           +   +F +A LL  ++  +++  P TT + +          D+V E+ C+   E ++CL 
Sbjct: 3   KFTTIFIMALLLCSTLTYAARLTPTTTTALSRENSVKEIEGDKVEEESCNGIGE-EECLI 62

Query: 85  RRTLEAHTDYIYSGETKP 103
           RR+L  HTDYIY+   KP
Sbjct: 63  RRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of MC08g0544 vs. TAIR 10
Match: AT4G37720.1 (phytosulfokine 6 precursor )

HSP 1 Score: 40.8 bits (94), Expect = 7.6e-04
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 26 LAALFAIAALLTMSVLLSSQARP-------ITTFSANSVEIAHPDSK-DRVHEDGCDERA 85
          L+ L  I ALL  + +L+  ARP        TT  A+++ +   +SK   V  + CD + 
Sbjct: 4  LSTLITI-ALLLCATMLTCSARPEPAYFASFTTSPADTLSLEMIESKLHEVAGESCD-KE 63

Query: 86 EDQDCLNRRTLEAHTDYIYS 98
          +D+DCL RRTL AH DYIY+
Sbjct: 64 DDEDCLVRRTLTAHLDYIYT 81

[Close]

BLAST of MC08g0544 vs. TAIR 10
Match: AT2G22942.1 (growth factors )

HSP 1 Score: 40.4 bits (93), Expect = 1.0e-03
Identity = 25/74 (33.78%), Postives = 38/74 (51.35%), Query Frame = 0


Query: 29  LFAIAALLTMSVLLSSQARPITTFSANSVEIAHPDSKDRVHEDGCDERAEDQDCLNRRTL 88
           +  +AA+L  SV+L+S ARP +T  + S EI              ++  E  +CL + T 
Sbjct: 6   ILIVAAVLLSSVVLASVARPDSTLQSKSTEI--------------EKNCETDECLMKTTS 65

Query: 89  EAHTDYIYSGETKP 103
           +AH DYIY+    P
Sbjct: 66  DAHLDYIYTQNPPP 65

The following BLAST results are available for this feature:

BLAST of MC08g0544 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81003	4.4e-04	39.02	Phytosulfokines 2 OS=Arabidopsis thaliana OX=3702 GN=PSK2 PE=2 SV=1	[more]
Q9FS10	9.7e-04	38.27	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]

BLAST of MC08g0544 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131649.1	3.38e-61	100.00	uncharacterized protein LOC111004777 [Momordica charantia]	[more]
XP_023546620.1	1.65e-18	64.20	phytosulfokines-like [Cucurbita pepo subsp. pepo]	[more]
KAG6598323.1	1.17e-15	62.20	Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029293.1 Ph...	[more]
XP_022132249.1	8.05e-15	60.76	phytosulfokines-like [Momordica charantia]	[more]
KAG6585714.1	3.43e-14	53.01	Phytosulfokine, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MC08g0544 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQV2	1.63e-61	100.00	Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111004777 PE=3 SV=1	[more]
A0A6J1BSJ0	3.90e-15	60.76	Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111005149 PE=3 SV=1	[more]
A0A445GB20	1.77e-05	40.24	Phytosulfokine-beta OS=Glycine soja OX=3848 GN=D0Y65_046780 PE=3 SV=1	[more]
Q7PCB1	1.77e-05	40.24	Phytosulfokine-beta OS=Glycine max OX=3847 GN=PSK4 PE=2 SV=1	[more]
A0A2I4HNM3	1.85e-05	43.37	Phytosulfokine-beta OS=Juglans regia OX=51240 GN=LOC109020036 PE=3 SV=1	[more]

BLAST of MC08g0544 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22860.1	3.1e-05	39.02	phytosulfokine 2 precursor	[more]
AT3G49780.1	5.8e-04	32.05	phytosulfokine 4 precursor	[more]
AT4G37720.1	7.6e-04	40.00	phytosulfokine 6 precursor	[more]
AT2G22942.1	1.0e-03	33.78	growth factors	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 63..99 e-value: 2.1E-10 score: 41.5
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 22..101
None	No IPR available	PANTHER	PTHR33285:SF1	PHYTOSULFOKINES 3	coord: 22..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g0544.1	MC08g0544.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008083	growth factor activity