MC08g0342 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g0342
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 2681207 .. 2681374 (-)
RNA-Seq Expression	MC08g0342
Synteny	MC08g0342

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCCTCAACGTAGATGCGGCTTGTGGTGGGCATCAATCAGGAACAGGTCTACGATCGATTATTAGGGATCCTGATGGAAGAATTTTGGCCGCCCATTCCAGTTTCCTCGAGGTCTCCTTCAGTCCTCTCCTTGTTGAAATTTGCGCAATCCTCGAGTGCCTACGA

mRNA sequence

ATTCTCCTCAACGTAGATGCGGCTTGTGGTGGGCATCAATCAGGAACAGGTCTACGATCGATTATTAGGGATCCTGATGGAAGAATTTTGGCCGCCCATTCCAGTTTCCTCGAGGTCTCCTTCAGTCCTCTCCTTGTTGAAATTTGCGCAATCCTCGAGTGCCTACGA

Coding sequence (CDS)

ATTCTCCTCAACGTAGATGCGGCTTGTGGTGGGCATCAATCAGGAACAGGTCTACGATCGATTATTAGGGATCCTGATGGAAGAATTTTGGCCGCCCATTCCAGTTTCCTCGAGGTCTCCTTCAGTCCTCTCCTTGTTGAAATTTGCGCAATCCTCGAGTGCCTACGA

Protein sequence

ILLNVDAACGGHQSGTGLRSIIRDPDGRILAAHSSFLEVSFSPLLVEICAILECLR

Homology

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BLAST of MC08g0342 vs. ExPASy TrEMBL
Match: A0A6J1CNR4 (uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012950 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.15e-04
Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 1  ILLNVDAACGGHQSGTGLRSIIRDPDGRILAAHSSFLEVSFSPLLVEICAILECLR 56
          I +NVD AC  HQ  T +  + R+  G+ILAA S  +E    PL+ E  A+LE LR
Sbjct: 33 IKINVDVACKKHQFRTAIGIVCRNEKGQILAAASRRMEAYHDPLMAESLALLEGLR 88

The following BLAST results are available for this feature:

BLAST of MC08g0342 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g0342 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g0342 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNR4	5.15e-04	44.64	uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of MC08g0342 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 4..55 e-value: 8.9E-5 score: 22.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g0342.1	MC08g0342.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity