MC08g0245 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g0245
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	double-stranded RNA-binding protein 1-like
Location	MC08: 1818133 .. 1821495 (+)
RNA-Seq Expression	MC08g0245
Synteny	MC08g0245

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCATTTTACCCACCATCCTTTTTTTAAATACCATTATAAGGCAATGATGACTTAAATTCAGCTCTAAATAAATTGTGCCAAATCTCCACTTTACTCTTTATATTATTTTTTCCCCAAACAGCATTATAAGGTCCAGAATTAAAAAATTTAGTCGATCATAAAACGTGACCAAAAAAGAAATTATTGTAATAGAATGGTTTTTAGCCCTAGGGCACCATCACCTAGGCTCCAAACTTCGCAGGCAGCTCCTTTTTTTCGCGTCTTCGAAGTGGTTTTTAACCCAGCGTGCGGCTCCGTTTCCCCTCTCGCCTTTACTAATACTCGATTCTCCTGAGAGCAGATTCGCGCTTTTTTCTTACTCTTGCTACTCTTCGGAGCCATGCCAGCCAAAGACAGTTTTCAAGGTATACCCTTTTCTTTTTCTTTTAAATTCGAACAGCTACTTCTCGGAGTCGTTTCTATTCTCAACTGTGATATCTGACTCAGTATTGATGTTGTTTTAGTTGGATTTTTTTCAAGGAACTTGGCCATTTTCTATTATTTTAAGGATTAGTTTCGTTGTATTCGGATCATCTCAGAGGATTTTGCTAATTTTAGAGGGGGAAATTGAGCTTCGATAGGACAGTGTTCTTGAGATAACTATTTGTCTGAGATGAGCAGAGAAGGTCTTAATGCTATTGTACCGATGTTTTTCTTTTTTAAAAAAAATTATCTTTTCTATGTAAACTTATTAGCTTCAAGGGTTTCAGTTTCAGTGATTGTTTAACGTGATATTAGGGCTCGCATTCAAACTGTAATGTCATTTCCTTCCCAAATTAATATCGATAATCGCTTGTTGGGCATTGTTTCAATTTTCAAGACCACAAATAAAGAGTGGTAAGAATATTAAAAGATTAAGTTTATCATCTTTAAGTTTTTTTGCTTCAGTGTTGATTTCATTTAACATTTTGAACTGCTTGATGCCATTGTGCAAATGTTTTTAACTTAATTTATTAGGTTTCTTCTATCTGCAGCCTAGTTATTGTATGAATATTACTTTTCATGCGAAGGGTGGTTTATTTTTGTTTTCTAAGCATAGGATAGGACAAGTTTTTTCTGTTGGTGCTATTTTTCTGATTCTTTGATGGATAACAGGTGTTTCAAATTGCTATGTTTTCAAAAGCCGACTGCAGGAATATGCACAAAAAGTGGGACTTCCCACACCCGTATATGAGACTATCAAAGAAGGTCCATCACATGAGCCAACCTTTCATTCTACTGTGATCGTAAAGGATGTTAGATATGATTCTTTACCTGGATTTTCTAATCGTAAGGCAGCAGAGCAGTCAGCTGCTGAGGTAGCTCTTATGGTGCTCTCAAAATCTAGTGATCTTAATCCACATGTCTCCTTACCCGTGGTAAGATTTCACATCCTTCACCCATATTAATCCCTTTAAATGTGTTTGTTGACCACAAAATACTGTATGATCCAATTCAAATCAAGTCCCACTTTTAGATATTGTGAACCTCTCTAATAACCAAATGTCAGAGCCCACTGTCTGTTTTCATGACTAATTGTTGGGTAATTTTCGAGTTTACTTCCCTTCTATTCCCAAATTTTCCTTTTTAAATGCGATACTTTTGGGGAAAATTTGGTATTGCTTGTTGATAAGAATTTTAGTTTTTTGCCTATTGAAAGTTCATTTGTTTTTAGATTTACTGAATACCAAATAGAAAGAGATCGAGGGATTTTGAGGGCAAAATCATAGAGTGGGAAGAGAGAGAGACATATCAAAGTTTCATGCTTCTTTTTTGGGTGCTCTATCTAGACATTTTATGCGCATTAATGTAAATCCCGTTGGAGTGGTTATAGAATTTCCTTTTGGCAACTTCTAAATACATACTGAAAAGTGTATTTTGTTAGAAAAAAAAGAAGAATGAAAACTTTTATTGAAAGGACTTCAAGATATAATATGGAAACTGTTTATCTTCTCTGCTGAAAATTGTTTTGCGAGAATTTTTCTGGTCTGTGGTTGTATCCTCTTACTATTAGGTTACATAATAGATAAAGCAGCTCAGCTGTAGCCTTATTTCACTTGGCAGACCTATTCCCTTTTGTTCTGTGACAATATCCCAAGTAGTTTATAGTTGTCAGCTTTTTGCTTCTTGTTCTTTATGGGTTGGGGTGGGGATTGTAGTAAAAAGAAGAATTAATGCTTTCTGTAACTTTCCAGTTTGACATTGGGGGTGGTGATTTAGTGGCAGTGAGCAGAAAAGCTGCTTTGTGATTTTCCCCATCTCTCTCTCTCTTTTTTTTGACAACTTCACCTTTATCATCCAGCATGAAACAGGACTGTGCAAAAATCTGCTTCAGGAATATGCACAGAAGATGAACTTTGCAATCCCACTATATCAGTGCCAAAAGGATGATGGTTCAGGCAGAGCACCCCTTTTCTCATGTACAGTAGAAATTGGAGGGATTCGCTACATTGGTGCTGTAGCAAAAACAAAGAAAGAGGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCAATTCAGTCTTGCCCGACGACGTTGTTCGAGAATCCTGTTGAGCATGTTCCACTCACTGTGCTCCCATGCAAGAGAAAAGATTCAGATTTATCAGTTAAACCAAAGACTAGTAGAGCGCCCAGAACAAGGAAAGGCCGATTTAGGAGGACGGTAAGGAATAAGTTCCCCAGAAATGGACCATTCGATTTCACCAGCAATTTGGAGTTCAACATTGATGGATCAACCTCAACCGGGGTTCAAATGCGGGGTATTGGAGAATATGTTGAATCAGCCAAGGATACCGTGCTGAATTCTGGATGTGGAACGACGAACTTAAGCTCAAGTGACATTCCGGTCTCTATTGTCCAAAGTGACATGACTCCACTCCTAAATAGTAATTTCGGAAATGGGGATTCGGGTGATCTCGGTTCCAATCGAATGAACTGTGGAACCTCTGATGTTACGAGTTTACCTCATTCTGACGCTCAAACTGCTTGTGGTTCAGTGGGGAATGTGGCCACTGGAGTAGTAGCAGGGGGGCTTCTTCAGTGATTGCTAGTTCCTTTCCAAATCCATGGATCGAAATTGAATGGGAGAGTCATGCTTAGCCTTGTAATTTAAGTAGTAAACAGAAGAGCTATTGCGAGGGCAGTTGCGGTAATTTACAAAAATGATAAAATATTGTTTGATCAAATAGTTGCGAGAGGTAATTTACAGAAACGCTAAAATGCTGTATGGTCAAAGAGTTGTGAAGTTAGCTTTTAGTAGAAGTCTGCTTTGAAACTGTCATGGCTGTGATATCTACTTCTAAGTTATTTTCTTGCATTAGTTTGGGTGAAAATTCTTCCC

mRNA sequence

CCCCATTTTACCCACCATCCTTTTTTTAAATACCATTATAAGGCAATGATGACTTAAATTCAGCTCTAAATAAATTGTGCCAAATCTCCACTTTACTCTTTATATTATTTTTTCCCCAAACAGCATTATAAGGTCCAGAATTAAAAAATTTAGTCGATCATAAAACGTGACCAAAAAAGAAATTATTGTAATAGAATGGTTTTTAGCCCTAGGGCACCATCACCTAGGCTCCAAACTTCGCAGGCAGCTCCTTTTTTTCGCGTCTTCGAAGTGGTTTTTAACCCAGCGTGCGGCTCCGTTTCCCCTCTCGCCTTTACTAATACTCGATTCTCCTGAGAGCAGATTCGCGCTTTTTTCTTACTCTTGCTACTCTTCGGAGCCATGCCAGCCAAAGACAGTTTTCAAGGTGTTTCAAATTGCTATGTTTTCAAAAGCCGACTGCAGGAATATGCACAAAAAGTGGGACTTCCCACACCCGTATATGAGACTATCAAAGAAGGTCCATCACATGAGCCAACCTTTCATTCTACTGTGATCGTAAAGGATGTTAGATATGATTCTTTACCTGGATTTTCTAATCGTAAGGCAGCAGAGCAGTCAGCTGCTGAGGTAGCTCTTATGGTGCTCTCAAAATCTAGTGATCTTAATCCACATGTCTCCTTACCCGTGCATGAAACAGGACTGTGCAAAAATCTGCTTCAGGAATATGCACAGAAGATGAACTTTGCAATCCCACTATATCAGTGCCAAAAGGATGATGGTTCAGGCAGAGCACCCCTTTTCTCATGTACAGTAGAAATTGGAGGGATTCGCTACATTGGTGCTGTAGCAAAAACAAAGAAAGAGGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCAATTCAGTCTTGCCCGACGACGTTGTTCGAGAATCCTGTTGAGCATGTTCCACTCACTGTGCTCCCATGCAAGAGAAAAGATTCAGATTTATCAGTTAAACCAAAGACTAGTAGAGCGCCCAGAACAAGGAAAGGCCGATTTAGGAGGACGGTAAGGAATAAGTTCCCCAGAAATGGACCATTCGATTTCACCAGCAATTTGGAGTTCAACATTGATGGATCAACCTCAACCGGGGTTCAAATGCGGGGTATTGGAGAATATGTTGAATCAGCCAAGGATACCGTGCTGAATTCTGGATGTGGAACGACGAACTTAAGCTCAAGTGACATTCCGGTCTCTATTGTCCAAAGTGACATGACTCCACTCCTAAATAGTAATTTCGGAAATGGGGATTCGGGTGATCTCGGTTCCAATCGAATGAACTGTGGAACCTCTGATGTTACGAGTTTACCTCATTCTGACGCTCAAACTGCTTGTGGTTCAGTGGGGAATGTGGCCACTGGAGTAGTAGCAGGGGGGCTTCTTCAGTGATTGCTAGTTCCTTTCCAAATCCATGGATCGAAATTGAATGGGAGAGTCATGCTTAGCCTTGTAATTTAAGTAGTAAACAGAAGAGCTATTGCGAGGGCAGTTGCGGTAATTTACAAAAATGATAAAATATTGTTTGATCAAATAGTTGCGAGAGGTAATTTACAGAAACGCTAAAATGCTGTATGGTCAAAGAGTTGTGAAGTTAGCTTTTAGTAGAAGTCTGCTTTGAAACTGTCATGGCTGTGATATCTACTTCTAAGTTATTTTCTTGCATTAGTTTGGGTGAAAATTCTTCCC

Coding sequence (CDS)

ATGCCAGCCAAAGACAGTTTTCAAGGTGTTTCAAATTGCTATGTTTTCAAAAGCCGACTGCAGGAATATGCACAAAAAGTGGGACTTCCCACACCCGTATATGAGACTATCAAAGAAGGTCCATCACATGAGCCAACCTTTCATTCTACTGTGATCGTAAAGGATGTTAGATATGATTCTTTACCTGGATTTTCTAATCGTAAGGCAGCAGAGCAGTCAGCTGCTGAGGTAGCTCTTATGGTGCTCTCAAAATCTAGTGATCTTAATCCACATGTCTCCTTACCCGTGCATGAAACAGGACTGTGCAAAAATCTGCTTCAGGAATATGCACAGAAGATGAACTTTGCAATCCCACTATATCAGTGCCAAAAGGATGATGGTTCAGGCAGAGCACCCCTTTTCTCATGTACAGTAGAAATTGGAGGGATTCGCTACATTGGTGCTGTAGCAAAAACAAAGAAAGAGGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCAATTCAGTCTTGCCCGACGACGTTGTTCGAGAATCCTGTTGAGCATGTTCCACTCACTGTGCTCCCATGCAAGAGAAAAGATTCAGATTTATCAGTTAAACCAAAGACTAGTAGAGCGCCCAGAACAAGGAAAGGCCGATTTAGGAGGACGGTAAGGAATAAGTTCCCCAGAAATGGACCATTCGATTTCACCAGCAATTTGGAGTTCAACATTGATGGATCAACCTCAACCGGGGTTCAAATGCGGGGTATTGGAGAATATGTTGAATCAGCCAAGGATACCGTGCTGAATTCTGGATGTGGAACGACGAACTTAAGCTCAAGTGACATTCCGGTCTCTATTGTCCAAAGTGACATGACTCCACTCCTAAATAGTAATTTCGGAAATGGGGATTCGGGTGATCTCGGTTCCAATCGAATGAACTGTGGAACCTCTGATGTTACGAGTTTACCTCATTCTGACGCTCAAACTGCTTGTGGTTCAGTGGGGAATGTGGCCACTGGAGTAGTAGCAGGGGGGCTTCTTCAGTGA

Protein sequence

MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDSLPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPVEHVPLTVLPCKRKDSDLSVKPKTSRAPRTRKGRFRRTVRNKFPRNGPFDFTSNLEFNIDGSTSTGVQMRGIGEYVESAKDTVLNSGCGTTNLSSSDIPVSIVQSDMTPLLNSNFGNGDSGDLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGVVAGGLLQ

Homology

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BLAST of MC08g0245 vs. ExPASy Swiss-Prot
Match: O04492 (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE=1 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.2e-68
Identity = 139/217 (64.06%), Postives = 163/217 (75.12%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           M + D   GVSNCYVFKSRLQEYAQK  LPTPVYE +KEGPSH+  F STVI+  VRY+S
Sbjct: 1   MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGF NRKAAEQSAAEVAL  L+KSS+L+  VS PVHETGLCKNLLQEYAQKMN+AIPLY
Sbjct: 61  LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QCQK +  GR   F+CTVEIGGI+Y GA  +TKK+AEI A RTALLAIQS       N  
Sbjct: 121 QCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLAN-- 180

Query: 181 EHVPLTVLPCKRKDSDLSVKPK-TSRAPRTRKGRFRR 217
            +  LTVLPC++K    ++  K T +  + RK +F++
Sbjct: 181 YNTQLTVLPCEKKTIQAAIPLKETVKTLKARKAQFKK 215

[Close]

BLAST of MC08g0245 vs. ExPASy Swiss-Prot
Match: Q0IQN6 (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB8 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-58
Identity = 127/208 (61.06%), Postives = 150/208 (72.12%), Query Frame = 0


Query: 10  VSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDSLPGFSNRKA 69
           V NCYVFKSRLQEYAQK GL TP Y T KEGPSHEP F STV++ +  YDSLPGF NRKA
Sbjct: 28  VENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87

Query: 70  AEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGSG 129
           AEQSAAEVALM + KS   N ++   V ETGLCKNLLQEYAQKMN+AIP Y C K   SG
Sbjct: 88  AEQSAAEVALMEIVKSIPANANIP-AVQETGLCKNLLQEYAQKMNYAIPSYICTK-SASG 147

Query: 130 RAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPVEHVPLTVLP 189
            AP F CTVEIGGI+YIGA A+TKK+AEIKAARTALLAIQ           +++   V+P
Sbjct: 148 LAP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYI---VVP 207

Query: 190 CKRKDSDLSVKP-KTSRAPRTRKGRFRR 217
            KR   ++  +P +T +  + +KG F++
Sbjct: 208 GKRVGKEVEKRPIETPKPLKVKKGGFKK 229

[Close]

BLAST of MC08g0245 vs. ExPASy Swiss-Prot
Match: Q0DJA3 (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB3 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.6e-58
Identity = 127/208 (61.06%), Postives = 150/208 (72.12%), Query Frame = 0


Query: 10  VSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDSLPGFSNRKA 69
           V NCYVFKSRLQEYAQK GL TP Y T KEGPSHEP F STV++ +  Y SLPGFSNRKA
Sbjct: 30  VENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKA 89

Query: 70  AEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGSG 129
           AEQSAAEVALM + KS   N ++   V ETGLCKNLLQEYAQKMN+AIP Y C K   SG
Sbjct: 90  AEQSAAEVALMEIVKSIPANANIP-AVQETGLCKNLLQEYAQKMNYAIPSYICTK-PASG 149

Query: 130 RAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPVEHVPLTVLP 189
            AP F CTVEIGGI+YIGA A+TKK+AEIKAARTALLAIQ           +++   V+P
Sbjct: 150 LAP-FLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYI---VVP 209

Query: 190 CKRKDSDLSVKP-KTSRAPRTRKGRFRR 217
            KR   ++  +P +T +  + +KG F++
Sbjct: 210 GKRVGKEVEKRPIETPKPLKAKKGGFKK 231

[Close]

BLAST of MC08g0245 vs. ExPASy Swiss-Prot
Match: Q0IV63 (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB7 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.6e-58
Identity = 127/208 (61.06%), Postives = 149/208 (71.63%), Query Frame = 0


Query: 10  VSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDSLPGFSNRKA 69
           V NCYVFKSRLQEYAQK GL TP Y T KEGPSHEP F STV++ +  YDSLPGF NRKA
Sbjct: 28  VENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87

Query: 70  AEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGSG 129
           AEQSAAEVALM + KS   N ++   V ETGLCKNLLQEYAQKMN+AIP Y C K   SG
Sbjct: 88  AEQSAAEVALMEIVKSIPANANIP-AVQETGLCKNLLQEYAQKMNYAIPSYICTK-SASG 147

Query: 130 RAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPVEHVPLTVLP 189
            AP F CTVEIGGI+YIGA A+TKK+AEIKAARTALLAIQ           +++   V+P
Sbjct: 148 LAP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYI---VVP 207

Query: 190 CKRKDSDLSVKP-KTSRAPRTRKGRFRR 217
            KR   ++   P +T +  + +KG F++
Sbjct: 208 GKRVGKEVEKMPIETPKPLKIKKGGFKK 229

[Close]

BLAST of MC08g0245 vs. ExPASy Swiss-Prot
Match: Q9AV50 (Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB6 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-22
Identity = 59/150 (39.33%), Postives = 88/150 (58.67%), Query Frame = 0


Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y  ++EGP H P F + V     +++S   F+  + AE +A
Sbjct: 1   MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60

Query: 75  AEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGSGRAPLF 134
           AEVAL  L++        +  + ETG+ KNLLQE AQ++   +P Y  ++  G G  P+F
Sbjct: 61  AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTER-SGLGHLPVF 120

Query: 135 SCTVEIGGIRYIGAVAKTKKEAEIKAARTA 165
           +CTVE+ GI + G  AK KK+AE  AA  A
Sbjct: 121 TCTVELAGITFTGDPAKNKKQAEKNAASAA 149

[Close]

BLAST of MC08g0245 vs. NCBI nr
Match: XP_022131807.1 (double-stranded RNA-binding protein 1-like [Momordica charantia])

HSP 1 Score: 676 bits (1743), Expect = 8.14e-245
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV
Sbjct: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180

Query: 181 EHVPLTVLPCKRKDSDLSVKPKTSRAPRTRKGRFRRTVRNKFPRNGPFDFTSNLEFNIDG 240
           EHVPLTVLPCKRKDSDLSVKPKTSRAPRTRKGRFRRTVRNKFPRNGPFDFTSNLEFNIDG
Sbjct: 181 EHVPLTVLPCKRKDSDLSVKPKTSRAPRTRKGRFRRTVRNKFPRNGPFDFTSNLEFNIDG 240

Query: 241 STSTGVQMRGIGEYVESAKDTVLNSGCGTTNLSSSDIPVSIVQSDMTPLLNSNFGNGDSG 300
           STSTGVQMRGIGEYVESAKDTVLNSGCGTTNLSSSDIPVSIVQSDMTPLLNSNFGNGDSG
Sbjct: 241 STSTGVQMRGIGEYVESAKDTVLNSGCGTTNLSSSDIPVSIVQSDMTPLLNSNFGNGDSG 300

Query: 301 DLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGVVAGGLLQ 343
           DLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGVVAGGLLQ
Sbjct: 301 DLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGVVAGGLLQ 343

[Close]

BLAST of MC08g0245 vs. NCBI nr
Match: XP_023545931.1 (double-stranded RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 470 bits (1210), Expect = 1.40e-163
Identity = 260/346 (75.14%), Postives = 282/346 (81.50%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTF+STVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALM LSKS+DLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QC+KDD SGR PLFSCTVEIGGIRYIGA AKTKKEAEIKAARTALLAIQSCPT+L EN V
Sbjct: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 EHVPLTVLPCKRKDS-DLSVKPKTSRAPRTRKGRFRRTV-RNKFPRNGPFDFTSNLEFNI 240
             V LTV+PCKRK++ D SVKPKT+ APR +KGRF++ V + K  RNG      NLEF+ 
Sbjct: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVVSKKKGHRNG----LPNLEFSF 240

Query: 241 DGST-----STGVQ-MRGIGEYVESAKDTVLNSGCGTTNLSSS--DIPVSIVQSDMTPLL 300
           D S+     +TGV  + G+GE VE AKDTVLNS   TT+LSSS  D+ VS +QSD  PL 
Sbjct: 241 DRSSFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPPLP 300

Query: 301 NSNFGNGDSGDLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGV 336
           N NFGN       SN++NC TSDV S P  D Q  CG V NVATGV
Sbjct: 301 NGNFGNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGV 342

[Close]

BLAST of MC08g0245 vs. NCBI nr
Match: KAG6598726.1 (Double-stranded RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 469 bits (1206), Expect = 5.69e-163
Identity = 259/346 (74.86%), Postives = 281/346 (81.21%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTF+STVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALM LSKS+DLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QC+KDD SGR PLFSCTVEIGGIRYIGA AKTKKEAEIKAARTALLAIQSCPT+L EN V
Sbjct: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 EHVPLTVLPCKRKDS-DLSVKPKTSRAPRTRKGRFRRTV-RNKFPRNGPFDFTSNLEFNI 240
             V LTV+PCKRK++ D SVKPKT+ APR +KGRF++   + K  RNG      NLEFN 
Sbjct: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNG----LPNLEFNF 240

Query: 241 DGST-----STGVQ-MRGIGEYVESAKDTVLNSGCGTTNLSSS--DIPVSIVQSDMTPLL 300
           D S+     +TGV  + G+GE VE AKDTVLNS   TT+LSSS  D+ VS +QSD + L 
Sbjct: 241 DRSSFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVVVSNIQSDTSQLP 300

Query: 301 NSNFGNGDSGDLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGV 336
           N NFGN       SN++NC TSDV S P  D Q  CG V NVATGV
Sbjct: 301 NGNFGNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGV 342

[Close]

BLAST of MC08g0245 vs. NCBI nr
Match: KAG7029667.1 (Double-stranded RNA-binding protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 468 bits (1203), Expect = 1.63e-162
Identity = 259/346 (74.86%), Postives = 280/346 (80.92%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTF+STVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALM LSKS+DLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QC+KDD SGR PLFSCTVEIGGIRYIGA AKTKKEAEIKAARTALLAIQSCPT+L EN V
Sbjct: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 EHVPLTVLPCKRKDS-DLSVKPKTSRAPRTRKGRFRRTV-RNKFPRNGPFDFTSNLEFNI 240
             V LTV+PCKRK++ D SVKPKT+ APR +KGRF++   + K  RNG      NLEFN 
Sbjct: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNG----LPNLEFNF 240

Query: 241 DGST-----STGVQ-MRGIGEYVESAKDTVLNSGCGTTNLSSS--DIPVSIVQSDMTPLL 300
           D S+     +TGV  + G+GE VE AKDTVLNS   TT+LSSS  D+ VS +QSD   L 
Sbjct: 241 DRSSFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPQLP 300

Query: 301 NSNFGNGDSGDLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGV 336
           N NFGN       SN++NC TSDV S P  D Q  CG V NVATGV
Sbjct: 301 NGNFGNDRLDTFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGV 342

[Close]

BLAST of MC08g0245 vs. NCBI nr
Match: XP_022962385.1 (double-stranded RNA-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 465 bits (1197), Expect = 1.33e-161
Identity = 258/346 (74.57%), Postives = 279/346 (80.64%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTF+STVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALM LSKS+DLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QC+KDD SGR PLFSCTVEIGGIRYIGA AKTKKEAEIKAARTALLAIQSCPT+L EN V
Sbjct: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 EHVPLTVLPCKRKDS-DLSVKPKTSRAPRTRKGRFRRTV-RNKFPRNGPFDFTSNLEFNI 240
             V LTV+PCKRK++ D SVKPKT+ APR +KGRF++   + K  RNG      NLEFN 
Sbjct: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNG----LPNLEFNF 240

Query: 241 DGST-----STGVQ-MRGIGEYVESAKDTVLNSGCGTTNLSSS--DIPVSIVQSDMTPLL 300
           D S+     + GV  + G+GE VE AKDTVLNS   TT+LSSS  D+ VS +QSD   L 
Sbjct: 241 DRSSFEPLETNGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPQLP 300

Query: 301 NSNFGNGDSGDLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGV 336
           N NFGN       SN++NC TSDV S P  D Q  CG V NVATGV
Sbjct: 301 NGNFGNDRLDAFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGV 342

[Close]

BLAST of MC08g0245 vs. ExPASy TrEMBL
Match: A0A6J1BS23 (double-stranded RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111004876 PE=4 SV=1)

HSP 1 Score: 676 bits (1743), Expect = 3.94e-245
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV
Sbjct: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180

Query: 181 EHVPLTVLPCKRKDSDLSVKPKTSRAPRTRKGRFRRTVRNKFPRNGPFDFTSNLEFNIDG 240
           EHVPLTVLPCKRKDSDLSVKPKTSRAPRTRKGRFRRTVRNKFPRNGPFDFTSNLEFNIDG
Sbjct: 181 EHVPLTVLPCKRKDSDLSVKPKTSRAPRTRKGRFRRTVRNKFPRNGPFDFTSNLEFNIDG 240

Query: 241 STSTGVQMRGIGEYVESAKDTVLNSGCGTTNLSSSDIPVSIVQSDMTPLLNSNFGNGDSG 300
           STSTGVQMRGIGEYVESAKDTVLNSGCGTTNLSSSDIPVSIVQSDMTPLLNSNFGNGDSG
Sbjct: 241 STSTGVQMRGIGEYVESAKDTVLNSGCGTTNLSSSDIPVSIVQSDMTPLLNSNFGNGDSG 300

Query: 301 DLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGVVAGGLLQ 343
           DLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGVVAGGLLQ
Sbjct: 301 DLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGVVAGGLLQ 343

[Close]

BLAST of MC08g0245 vs. ExPASy TrEMBL
Match: A0A6J1HEW7 (double-stranded RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111462846 PE=4 SV=1)

HSP 1 Score: 465 bits (1197), Expect = 6.44e-162
Identity = 258/346 (74.57%), Postives = 279/346 (80.64%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTF+STVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALM LSKS+DLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QC+KDD SGR PLFSCTVEIGGIRYIGA AKTKKEAEIKAARTALLAIQSCPT+L EN V
Sbjct: 121 QCKKDDSSGRTPLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 EHVPLTVLPCKRKDS-DLSVKPKTSRAPRTRKGRFRRTV-RNKFPRNGPFDFTSNLEFNI 240
             V LTV+PCKRK++ D SVKPKT+ APR +KGRF++   + K  RNG      NLEFN 
Sbjct: 181 NQVQLTVIPCKRKEAADCSVKPKTAGAPRIKKGRFKKVASKKKGHRNG----LPNLEFNF 240

Query: 241 DGST-----STGVQ-MRGIGEYVESAKDTVLNSGCGTTNLSSS--DIPVSIVQSDMTPLL 300
           D S+     + GV  + G+GE VE AKDTVLNS   TT+LSSS  D+ VS +QSD   L 
Sbjct: 241 DRSSFEPLETNGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPQLP 300

Query: 301 NSNFGNGDSGDLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGV 336
           N NFGN       SN++NC TSDV S P  D Q  CG V NVATGV
Sbjct: 301 NGNFGNDRLDAFSSNQINCSTSDVMSFPLPDVQATCGEVANVATGV 342

[Close]

BLAST of MC08g0245 vs. ExPASy TrEMBL
Match: A0A6J1K8Y3 (double-stranded RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111492178 PE=4 SV=1)

HSP 1 Score: 461 bits (1187), Expect = 2.21e-160
Identity = 257/347 (74.06%), Postives = 279/347 (80.40%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTF+STVIVKDVRYDS
Sbjct: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALM LSKS+DLNPHVS PVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QC+KDD SGR  LFSCTVEIGGIRYIGA AKTKKEAEIKAARTALLAIQSCPT+L EN V
Sbjct: 121 QCKKDDSSGRTSLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180

Query: 181 EHVPLTVLPCKRKDS-DLSVKPKTSRAPRTRKGRFRRTV-RNKFPRNGPFDFTSNLEFNI 240
             V LTV+PCKRK++ D SVKPKT+ APR +KGRF++ V + K  R+G      NLEFN 
Sbjct: 181 NQVQLTVIPCKRKEAADFSVKPKTTGAPRIKKGRFKKVVSKKKDNRSG----LPNLEFNF 240

Query: 241 DGSTS------TGVQ-MRGIGEYVESAKDTVLNSGCGTTNLSSS--DIPVSIVQSDMTPL 300
           D S+S      TGV  + G+GE VE AKDTVLNS   TT+LSSS  D+ VS +QSD   L
Sbjct: 241 DRSSSFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPQL 300

Query: 301 LNSNFGNGDSGDLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGV 336
            N N GN       SN++NC TSDV S P SD Q  CG V NVATG+
Sbjct: 301 PNGNIGNDRLDTFSSNQINCSTSDVMSFPLSDVQATCGEVANVATGM 343

[Close]

BLAST of MC08g0245 vs. ExPASy TrEMBL
Match: A0A5A7VI00 (Double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004330 PE=4 SV=1)

HSP 1 Score: 450 bits (1157), Expect = 8.05e-156
Identity = 255/347 (73.49%), Postives = 276/347 (79.54%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           MPAKD+FQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIV DVRYDS
Sbjct: 1   MPAKDNFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALM LSKSSDLNPHVS PVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QCQKDDG GR  LFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP +L    V
Sbjct: 121 QCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSAKSV 180

Query: 181 EHVPLTVLP-CKRKDS-DLSVKPKTSRAPRTRKGRFRRTV-RNKFPRNGPFDFTSNLEFN 240
             V LTV+P CKRK++ D SV PK++ APR +KGRF+R V R +  RNG      NL+FN
Sbjct: 181 NQVQLTVIPSCKRKEAADCSVTPKSTAAPRAKKGRFKRGVLRKRGFRNG----LVNLDFN 240

Query: 241 -IDGS-----TSTGVQMRGIGEYVESAKDTVLNSGCGTTNLSSS--DIPVSIVQSDMTPL 300
            ID S     T+  VQ+ G    V+ AKDT+ NS   TT+LSSS  D  VS VQSDM P 
Sbjct: 241 NIDRSALEPFTTEAVQLPGYAGPVDLAKDTLPNSESRTTDLSSSNNDFLVSNVQSDMPPH 300

Query: 301 LNSNFGNGDSGDLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGV 336
           +NSNFGN  SG L SN++NC TS+V S P +D Q  C  VGNVA GV
Sbjct: 301 VNSNFGNACSGTLNSNQVNCATSNVMSFPLTDVQPTCSEVGNVAAGV 343

[Close]

BLAST of MC08g0245 vs. ExPASy TrEMBL
Match: A0A0A0LRU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370450 PE=4 SV=1)

HSP 1 Score: 449 bits (1156), Expect = 1.27e-155
Identity = 252/346 (72.83%), Postives = 275/346 (79.48%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           MPAKD+FQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIV DVRYDS
Sbjct: 1   MPAKDNFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGFSNRKAAEQSAAEVALM LSKSSDLNPHVS PVHETGLCKNLLQEYAQKMNFAIPLY
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QCQKDDG GR  LFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP +L E  V
Sbjct: 121 QCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSV 180

Query: 181 EHVPLTVLP-CKRKDS-DLSVKPKTSRAPRTRKGRFRRTVRNKFPRNGPFDFTSNLEF-N 240
             V LTV+P CKRK++ D SVKPK++ +PR +KGRF+R  R         +   NL+F N
Sbjct: 181 NQVQLTVIPSCKRKEAADCSVKPKSTASPRAKKGRFKRFKRGVLRNRDFINGLVNLDFDN 240

Query: 241 IDGST----STGV-QMRGIGEYVESAKDTVLNSGCGTTNLSSS--DIPVSIVQSDMTPLL 300
            D ST    +TGV Q+ G    V+ AKDT+LNS C TT+LSS+  D+ VS VQSDM  LL
Sbjct: 241 TDRSTLEPFTTGVVQLPGYVGPVDLAKDTLLNSECRTTDLSSNNNDVLVSNVQSDMPLLL 300

Query: 301 NSNFGNGDSGDLGSNRMNCGTSDVTSLPHSDAQTACGSVGNVATGV 336
           N N GNG SG   SN++NC TS+V S P +D Q  C  V NVA GV
Sbjct: 301 NGNSGNGCSGTFNSNQVNCATSNVMSSPLTDVQPTCSEVANVAAGV 346

[Close]

BLAST of MC08g0245 vs. TAIR 10
Match: AT1G09700.1 (dsRNA-binding domain-like superfamily protein )

HSP 1 Score: 260.8 bits (665), Expect = 1.6e-69
Identity = 139/217 (64.06%), Postives = 163/217 (75.12%), Query Frame = 0


Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDS 60
           M + D   GVSNCYVFKSRLQEYAQK  LPTPVYE +KEGPSH+  F STVI+  VRY+S
Sbjct: 1   MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 60

Query: 61  LPGFSNRKAAEQSAAEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGF NRKAAEQSAAEVAL  L+KSS+L+  VS PVHETGLCKNLLQEYAQKMN+AIPLY
Sbjct: 61  LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLY 120

Query: 121 QCQKDDGSGRAPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPTTLFENPV 180
           QCQK +  GR   F+CTVEIGGI+Y GA  +TKK+AEI A RTALLAIQS       N  
Sbjct: 121 QCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLAN-- 180

Query: 181 EHVPLTVLPCKRKDSDLSVKPK-TSRAPRTRKGRFRR 217
            +  LTVLPC++K    ++  K T +  + RK +F++
Sbjct: 181 YNTQLTVLPCEKKTIQAAIPLKETVKTLKARKAQFKK 215

[Close]

BLAST of MC08g0245 vs. TAIR 10
Match: AT3G26932.1 (dsRNA-binding protein 3 )

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-23
Identity = 62/158 (39.24%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y   +EGP H P F ++V      ++S    S  + AE SA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 75  AEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGSGRAPLF 134
           AEVAL  LS         +  + ETG+ KNLLQE A +    +P+Y   +  G G  P F
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVR-SGPGHIPTF 120

Query: 135 SCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP 173
           SCTVE+ G+ + G  AKTKK+AE  AA  A  +++  P
Sbjct: 121 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMP 157

[Close]

BLAST of MC08g0245 vs. TAIR 10
Match: AT3G26932.2 (dsRNA-binding protein 3 )

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-23
Identity = 62/158 (39.24%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y   +EGP H P F ++V      ++S    S  + AE SA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 75  AEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGSGRAPLF 134
           AEVAL  LS         +  + ETG+ KNLLQE A +    +P+Y   +  G G  P F
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVR-SGPGHIPTF 120

Query: 135 SCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCP 173
           SCTVE+ G+ + G  AKTKK+AE  AA  A  +++  P
Sbjct: 121 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMP 157

[Close]

BLAST of MC08g0245 vs. TAIR 10
Match: AT2G28380.1 (dsRNA-binding protein 2 )

HSP 1 Score: 103.2 bits (256), Expect = 4.2e-22
Identity = 62/150 (41.33%), Postives = 85/150 (56.67%), Query Frame = 0


Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y  I+EGP H P F +TV      ++S    S  + AE SA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 75  AEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGSGRAPLF 134
           AEVAL  LS     +   +  + ETG+ KNLLQE AQ++   +P Y   +  G G  P+F
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFR-SGLGHQPVF 120

Query: 135 SCTVEIGGIRYIGAVAKTKKEAEIKAARTA 165
           + TVE+ GI + G  AK KK+AE  AA  A
Sbjct: 121 TGTVELAGITFTGDPAKNKKQAEKNAAMAA 149

[Close]

BLAST of MC08g0245 vs. TAIR 10
Match: AT5G41070.1 (dsRNA-binding protein 5 )

HSP 1 Score: 102.1 bits (253), Expect = 9.4e-22
Identity = 61/150 (40.67%), Postives = 85/150 (56.67%), Query Frame = 0


Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y  I+EGP H P F ++V      ++S    S  + AE +A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 75  AEVALMVLSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGSGRAPLF 134
           AEV+L VLS         +  + ETG+ KNLLQE A +    +P+Y   +  GS   P F
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVR-SGSCHFPGF 120

Query: 135 SCTVEIGGIRYIGAVAKTKKEAEIKAARTA 165
           SCTVE+ G+ + G  AKTKK+AE  AA  A
Sbjct: 121 SCTVELAGMTFTGESAKTKKQAEKNAAIAA 149

The following BLAST results are available for this feature:

BLAST of MC08g0245 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04492	2.2e-68	64.06	Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE...	[more]
Q0IQN6	1.2e-58	61.06	Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0DJA3	3.6e-58	61.06	Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0IV63	3.6e-58	61.06	Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q9AV50	1.4e-22	39.33	Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of MC08g0245 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131807.1	8.14e-245	100.00	double-stranded RNA-binding protein 1-like [Momordica charantia]	[more]
XP_023545931.1	1.40e-163	75.14	double-stranded RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6598726.1	5.69e-163	74.86	Double-stranded RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7029667.1	1.63e-162	74.86	Double-stranded RNA-binding protein 1 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022962385.1	1.33e-161	74.57	double-stranded RNA-binding protein 1-like [Cucurbita moschata]	[more]

BLAST of MC08g0245 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BS23	3.94e-245	100.00	double-stranded RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1HEW7	6.44e-162	74.57	double-stranded RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1K8Y3	2.21e-160	74.06	double-stranded RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5A7VI00	8.05e-156	73.49	Double-stranded RNA-binding protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0LRU8	1.27e-155	72.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370450 PE=4 SV=1	[more]

BLAST of MC08g0245 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09700.1	1.6e-69	64.06	dsRNA-binding domain-like superfamily protein	[more]
AT3G26932.1	1.7e-23	39.24	dsRNA-binding protein 3	[more]
AT3G26932.2	1.7e-23	39.24	dsRNA-binding protein 3	[more]
AT2G28380.1	4.2e-22	41.33	dsRNA-binding protein 2	[more]
AT5G41070.1	9.4e-22	40.67	dsRNA-binding protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 16..83 e-value: 1.3E-19 score: 81.1 coord: 102..169 e-value: 8.7E-18 score: 75.1
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 17..81 e-value: 2.0E-14 score: 54.0 coord: 103..166 e-value: 1.3E-15 score: 57.9
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 101..170 score: 12.402353
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 15..84 score: 14.198799
None	No IPR available	GENE3D	3.30.160.20		coord: 16..97 e-value: 1.2E-24 score: 88.2
None	No IPR available	GENE3D	3.30.160.20		coord: 98..170 e-value: 4.2E-24 score: 86.6
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 16..84
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 103..173
IPR011907	Ribonuclease III	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 1..223
IPR031147	Double-stranded RNA-binding protein	PANTHER	PTHR11207:SF1	DOUBLE-STRANDED RNA-BINDING PROTEIN 1	coord: 1..223
IPR044451	AtDRB-like, second double-stranded RNA binding domain, plant	CDD	cd19908	DSRM_AtDRB-like_rpt2	coord: 100..169 e-value: 3.21614E-32 score: 113.343
IPR044450	AtDRB-like, first double-stranded RNA binding domain, plant	CDD	cd19907	DSRM_AtDRB-like_rpt1	coord: 15..83 e-value: 1.95962E-31 score: 111.414

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g0245.1	MC08g0245.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010589	leaf proximal/distal pattern formation
biological_process	GO:0010305	leaf vascular tissue pattern formation
biological_process	GO:0035279	mRNA destabilization-mediated gene silencing by miRNA
biological_process	GO:0031054	pre-miRNA processing
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009733	response to auxin
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0016075	rRNA catabolic process
cellular_component	GO:0010445	nuclear dicing body
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0035198	miRNA binding
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding