MC07g_new0006 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0006
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC07: 191252 .. 191578 (-)
RNA-Seq Expression	MC07g_new0006
Synteny	MC07g_new0006

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTACCTTAAAAGCGTATCACGCTTCTCAAGGAGGTCAAAAAACAGAAGAAGAAATAATGGAGACAATCCTTGGGAGAAGATCGAACTATATAATAGGAATGAGATATGGACCGAAGCTCACCAGAAATAAAGGATCATCATCAAAATACCCTGATGAATATGTGGAGTCATTAGAGTCTCGTCTTCAGAAGCATGAGGAAGAATTGACAGCTCAACAAAAGGCGAACGAAGACCAACAAATGGCCGCCCAAGAACAAATACAGAAAGCATTATTGGAGGCCCAAAGTCAGGAGTTTAATAGGAAACTTCTCGAATGCAACTAA

mRNA sequence

ATGATTACCTTAAAAGCGTATCACGCTTCTCAAGGAGGTCAAAAAACAGAAGAAGAAATAATGGAGACAATCCTTGGGAGAAGATCGAACTATATAATAGGAATGAGATATGGACCGAAGCTCACCAGAAATAAAGGATCATCATCAAAATACCCTGATGAATATGTGGAGTCATTAGAGTCTCGTCTTCAGAAGCATGAGGAAGAATTGACAGCTCAACAAAAGGCGAACGAAGACCAACAAATGGCCGCCCAAGAACAAATACAGAAAGCATTATTGGAGGCCCAAAGTCAGGAGTTTAATAGGAAACTTCTCGAATGCAACTAA

Coding sequence (CDS)

ATGATTACCTTAAAAGCGTATCACGCTTCTCAAGGAGGTCAAAAAACAGAAGAAGAAATAATGGAGACAATCCTTGGGAGAAGATCGAACTATATAATAGGAATGAGATATGGACCGAAGCTCACCAGAAATAAAGGATCATCATCAAAATACCCTGATGAATATGTGGAGTCATTAGAGTCTCGTCTTCAGAAGCATGAGGAAGAATTGACAGCTCAACAAAAGGCGAACGAAGACCAACAAATGGCCGCCCAAGAACAAATACAGAAAGCATTATTGGAGGCCCAAAGTCAGGAGTTTAATAGGAAACTTCTCGAATGCAACTAA

Protein sequence

MITLKAYHASQGGQKTEEEIMETILGRRSNYIIGMRYGPKLTRNKGSSSKYPDEYVESLESRLQKHEEELTAQQKANEDQQMAAQEQIQKALLEAQSQEFNRKLLECN

Homology

[Close]

BLAST of MC07g_new0006 vs. NCBI nr
Match: XP_022143616.1 (uncharacterized protein LOC111013476 [Momordica charantia])

HSP 1 Score: 147 bits (371), Expect = 5.42e-42
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MITLKAYHASQGGQKTEEEIMETILGRRSNYIIGMRYGPKLTRNKGSSSKYPDEYVESLE 60
           MITLKAYHASQG +KTEEEIMET+LG+RSNY+IGM YGPK TRNKGSSSKY DEYVESLE
Sbjct: 107 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 166

Query: 61  SRLQKHEEELTAQQKANEDQQMAAQEQIQKALLEAQSQEFNRKLLE 106
           +RLQKHEEE+              QEQIQKAL EAQSQEFNRKLLE
Sbjct: 167 ARLQKHEEEMAR----------TTQEQIQKAL-EAQSQEFNRKLLE 201

[Close]

BLAST of MC07g_new0006 vs. NCBI nr
Match: XP_022148911.1 (uncharacterized protein LOC111017461 [Momordica charantia])

HSP 1 Score: 147 bits (371), Expect = 1.58e-41
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MITLKAYHASQGGQKTEEEIMETILGRRSNYIIGMRYGPKLTRNKGSSSKYPDEYVESLE 60
           MITLKAYHASQG +KTEEEIMET+LG+RSNY+IGM YGPK TRNKGSSSKY DEYVESLE
Sbjct: 112 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 171

Query: 61  SRLQKHEEELTAQQKANEDQQMAAQEQIQKALLEAQSQEFNRKLLE 106
           +RLQKHEEE+              QEQIQKAL EAQSQEFNRKLLE
Sbjct: 172 ARLQKHEEEMAR----------TTQEQIQKAL-EAQSQEFNRKLLE 206

[Close]

BLAST of MC07g_new0006 vs. NCBI nr
Match: XP_022153681.1 (uncharacterized protein LOC111021138 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 4.43e-14
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 1   MITLKAYHASQGGQKTEEEIMETILGRRSNYIIGMRYGPK 40
           MITLKA HASQG +KTEEEIMET+LGRRSNYIIGM YGPK
Sbjct: 107 MITLKANHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPK 146

[Close]

BLAST of MC07g_new0006 vs. NCBI nr
Match: KAG5572499.1 (hypothetical protein H5410_062265 [Solanum commersonii])

HSP 1 Score: 48.1 bits (113), Expect = 2.76e-04
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 1  MITLKAYHASQGGQKTEEEIMETILGRRSNYIIGMRYGPKLTRNKGSSSKYPDEYVESLE 60
          MI LKA + S     T +EI++ ILG++S YI G+ YGPK   N+ +  +  +     LE
Sbjct: 1  MIDLKALYTSGESSMTIDEIVDAILGKKSGYIKGLGYGPKPNTNRATQRRTAE-----LE 60

Query: 61 SRLQKHEEELTAQQ 74
            L+K +EE  + Q
Sbjct: 61 DSLRKTKEEAASVQ 69

[Close]

BLAST of MC07g_new0006 vs. NCBI nr
Match: KAG5576495.1 (hypothetical protein H5410_056629 [Solanum commersonii])

HSP 1 Score: 48.5 bits (114), Expect = 7.25e-04
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 1   MITLKAYHASQGGQKTEEEIMETILGRRSNYIIGMRYGPKLTRNKGSSSKYPDEYVESLE 60
           MI LKA + S     T +EI++ ILG++S YI G+ YGPK   N+ +  +   E  +SLE
Sbjct: 152 MIDLKALYTSGESSMTIDEIVDAILGKKSGYIKGLGYGPKPNTNRATQRR-TTELEDSLE 211

Query: 61  SRLQK 65
            R +K
Sbjct: 212 RRRRK 215

[Close]

BLAST of MC07g_new0006 vs. ExPASy TrEMBL
Match: A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 2.62e-42
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MITLKAYHASQGGQKTEEEIMETILGRRSNYIIGMRYGPKLTRNKGSSSKYPDEYVESLE 60
           MITLKAYHASQG +KTEEEIMET+LG+RSNY+IGM YGPK TRNKGSSSKY DEYVESLE
Sbjct: 107 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 166

Query: 61  SRLQKHEEELTAQQKANEDQQMAAQEQIQKALLEAQSQEFNRKLLE 106
           +RLQKHEEE+              QEQIQKAL EAQSQEFNRKLLE
Sbjct: 167 ARLQKHEEEMAR----------TTQEQIQKAL-EAQSQEFNRKLLE 201

[Close]

BLAST of MC07g_new0006 vs. ExPASy TrEMBL
Match: A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 7.66e-42
Identity = 81/106 (76.42%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MITLKAYHASQGGQKTEEEIMETILGRRSNYIIGMRYGPKLTRNKGSSSKYPDEYVESLE 60
           MITLKAYHASQG +KTEEEIMET+LG+RSNY+IGM YGPK TRNKGSSSKY DEYVESLE
Sbjct: 112 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 171

Query: 61  SRLQKHEEELTAQQKANEDQQMAAQEQIQKALLEAQSQEFNRKLLE 106
           +RLQKHEEE+              QEQIQKAL EAQSQEFNRKLLE
Sbjct: 172 ARLQKHEEEMAR----------TTQEQIQKAL-EAQSQEFNRKLLE 206

[Close]

BLAST of MC07g_new0006 vs. ExPASy TrEMBL
Match: A0A6J1DLF1 (uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021138 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.14e-14
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 1   MITLKAYHASQGGQKTEEEIMETILGRRSNYIIGMRYGPK 40
           MITLKA HASQG +KTEEEIMET+LGRRSNYIIGM YGPK
Sbjct: 107 MITLKANHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPK 146

[Close]

BLAST of MC07g_new0006 vs. ExPASy TrEMBL
Match: M1DNT9 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.62e-05
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 1   MITLKAYHASQGGQKTEEEIMETILGRRSNYIIGMRYGPKLTRNKGSSSKYPDEYVESLE 60
           MI LKA + S     T +EI++ ILG++S YI G+ YGPK   N+ +  +     +  LE
Sbjct: 122 MIDLKALYTSGESSMTIDEIVDAILGKKSGYIKGLGYGPKPNTNRATQRR-----IAELE 181

Query: 61  SRLQKHEEELTAQQ 74
             LQK +EE  + Q
Sbjct: 182 DSLQKMKEEAASVQ 190

[Close]

BLAST of MC07g_new0006 vs. ExPASy TrEMBL
Match: M1DU51 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.53e-04
Identity = 27/65 (41.54%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 1  MITLKAYHASQGGQKTEEEIMETILGRRSNYIIGMRYGPKLTRNKGSSSKYPDEYVESLE 60
          MI LKA + S     T +EI++ IL ++S YI G+ YGPKLT     S +   E   S++
Sbjct: 1  MIDLKALYTSGESSMTIDEIVDAILSKKSGYIKGLGYGPKLTTELEDSFRKTKEEASSVQ 60

Query: 61 SRLQK 65
            LQK
Sbjct: 61 LGLQK 65

The following BLAST results are available for this feature:

BLAST of MC07g_new0006 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g_new0006 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143616.1	5.42e-42	76.42	uncharacterized protein LOC111013476 [Momordica charantia]	[more]
XP_022148911.1	1.58e-41	76.42	uncharacterized protein LOC111017461 [Momordica charantia]	[more]
XP_022153681.1	4.43e-14	87.50	uncharacterized protein LOC111021138 [Momordica charantia]	[more]
KAG5572499.1	2.76e-04	37.84	hypothetical protein H5410_062265 [Solanum commersonii]	[more]
KAG5576495.1	7.25e-04	41.54	hypothetical protein H5410_056629 [Solanum commersonii]	[more]

BLAST of MC07g_new0006 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQT5	2.62e-42	76.42	uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1D6S9	7.66e-42	76.42	uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DLF1	2.14e-14	87.50	uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
M1DNT9	5.62e-05	39.19	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
M1DU51	2.53e-04	41.54	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]

BLAST of MC07g_new0006 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g_new0006.1	MC07g_new0006.1	mRNA