MC07g0072 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g0072
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Pentatricopeptide repeat-containing family protein
Location	MC07: 944731 .. 944990 (+)
RNA-Seq Expression	MC07g0072
Synteny	MC07g0072

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCCTCTTGGCCAAAAAGGTCGATATAAGCTTGCTCTGCATATCTTTCAACCAATCGACAAACCGGATTGCTATACTAACAAGCAAAGTTATTCTATTTTAGTGAGGCTATTCATTAGTTGAATCCATGTCCACGAATTTCTCAGAGGGGTAGTGGTGTGGGCTTTTTGTCAAACACCCTTTTGGATGGTCTATATGTTAATAGAAAGATCGAGCAGGTTCTGGAAATACTTGGTCAGATCTATATGAATGGACTAAAG

mRNA sequence

GAGCCTCTTGGCCAAAAAGGTCGATATAAGCTTGCTCTGCATATCTTTCAACCAATCGACAAACCGGATTGCTATACTAACAAGCAAAGTTATTCTATTTTAGTGAGGCTATTCATTTTGAATCCATGTCCACGAATTTCTCAGAGGGGTAGTGGTGTGGGCTTTTTGTCAAACACCCTTTTGGATGGTCTATATGTTAATAGAAAGATCGAGCAGGTTCTGGAAATACTTGGTCAGATCTATATGAATGGACTAAAG

Coding sequence (CDS)

GAGCCTCTTGGCCAAAAAGGTCGATATAAGCTTGCTCTGCATATCTTTCAACCAATCGACAAACCGGATTGCTATACTAACAAGCAAAGTTATTCTATTTTAGTGAGGCTATTCATTTTGAATCCATGTCCACGAATTTCTCAGAGGGGTAGTGGTGTGGGCTTTTTGTCAAACACCCTTTTGGATGGTCTATATGTTAATAGAAAGATCGAGCAGGTTCTGGAAATACTTGGTCAGATCTATATGAATGGACTAAAG

Protein sequence

EPLGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFILNPCPRISQRGSGVGFLSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

Homology

[Close]

BLAST of MC07g0072 vs. ExPASy Swiss-Prot
Match: Q9SYK1 (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX=3702 GN=At1g05600 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.7e-06
Identity = 34/97 (35.05%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRG 62
           L Q  R  LA  +FQ ++   CY ++ SY IL++ F L            +   RISQ+G
Sbjct: 162 LCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKG 221

Query: 63  SGVGF-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG    +   LLD L    +++  +EILG+I   GLK
Sbjct: 222 SGEDIVVYRILLDALCDAGEVDDAIEILGKILRKGLK 258

[Close]

BLAST of MC07g0072 vs. NCBI nr
Match: KAF9861710.1 (hypothetical protein H0E87_012824 [Populus deltoides])

HSP 1 Score: 64.7 bits (156), Expect = 9.16e-10
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGVGFLS-NTLLDGLYVNRKIEQVLEILGQIYMNGLK 86
           SG   +   TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MC07g0072 vs. NCBI nr
Match: KAG6786927.1 (hypothetical protein POTOM_008547 [Populus tomentosa])

HSP 1 Score: 64.7 bits (156), Expect = 9.17e-10
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGVGFLS-NTLLDGLYVNRKIEQVLEILGQIYMNGLK 86
           SG   +   TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MC07g0072 vs. NCBI nr
Match: KAF9861711.1 (hypothetical protein H0E87_012824 [Populus deltoides])

HSP 1 Score: 64.7 bits (156), Expect = 9.23e-10
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGVGFLS-NTLLDGLYVNRKIEQVLEILGQIYMNGLK 86
           SG   +   TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MC07g0072 vs. NCBI nr
Match: XP_011025376.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Populus euphratica])

HSP 1 Score: 64.7 bits (156), Expect = 9.23e-10
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGVGFLS-NTLLDGLYVNRKIEQVLEILGQIYMNGLK 86
           SG   +   TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MC07g0072 vs. NCBI nr
Match: XP_034933387.1 (pentatricopeptide repeat-containing protein At1g05600 [Populus alba] >TKS02054.1 pentatricopeptide repeat-containing family protein [Populus alba])

HSP 1 Score: 64.7 bits (156), Expect = 9.23e-10
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGVGFLS-NTLLDGLYVNRKIEQVLEILGQIYMNGLK 86
           SG   +   TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MC07g0072 vs. ExPASy TrEMBL
Match: A0A4U5PX12 (Pentatricopeptide repeat-containing family protein OS=Populus alba OX=43335 GN=D5086_0000167350 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.47e-10
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGVGFLS-NTLLDGLYVNRKIEQVLEILGQIYMNGLK 86
           SG   +   TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MC07g0072 vs. ExPASy TrEMBL
Match: A0A5N5NNS3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_003058 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.47e-10
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGVGFLS-NTLLDGLYVNRKIEQVLEILGQIYMNGLK 86
           SG   +   TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MC07g0072 vs. ExPASy TrEMBL
Match: A0A6N2L9A7 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS195456 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.47e-10
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCGDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGVGFLS-NTLLDGLYVNRKIEQVLEILGQIYMNGLK 86
           SG   +   TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MC07g0072 vs. ExPASy TrEMBL
Match: A0A2K2BKH4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G179300 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.28e-10
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGVGFLS-NTLLDGLYVNRKIEQVLEILGQIYMNGLK 86
           SG   +   TLLD L  N ++E+ +EILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEAMEILGKILRKGLK 257

[Close]

BLAST of MC07g0072 vs. ExPASy TrEMBL
Match: A0A2K2BKH6 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G179300 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.34e-10
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGVGFLS-NTLLDGLYVNRKIEQVLEILGQIYMNGLK 86
           SG   +   TLLD L  N ++E+ +EILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEAMEILGKILRKGLK 257

[Close]

BLAST of MC07g0072 vs. TAIR 10
Match: AT1G05600.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 4.8e-07
Identity = 34/97 (35.05%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRG 62
           L Q  R  LA  +FQ ++   CY ++ SY IL++ F L            +   RISQ+G
Sbjct: 162 LCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKG 221

Query: 63  SGVGF-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG    +   LLD L    +++  +EILG+I   GLK
Sbjct: 222 SGEDIVVYRILLDALCDAGEVDDAIEILGKILRKGLK 258

[Close]

BLAST of MC07g0072 vs. TAIR 10
Match: AT1G05600.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 4.8e-07
Identity = 34/97 (35.05%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRG 62
           L Q  R  LA  +FQ ++   CY ++ SY IL++ F L            +   RISQ+G
Sbjct: 162 LCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKG 221

Query: 63  SGVGF-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG    +   LLD L    +++  +EILG+I   GLK
Sbjct: 222 SGEDIVVYRILLDALCDAGEVDDAIEILGKILRKGLK 258

The following BLAST results are available for this feature:

BLAST of MC07g0072 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYK1	6.7e-06	35.05	Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX...	[more]

BLAST of MC07g0072 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF9861710.1	9.16e-10	43.30	hypothetical protein H0E87_012824 [Populus deltoides]	[more]
KAG6786927.1	9.17e-10	43.30	hypothetical protein POTOM_008547 [Populus tomentosa]	[more]
KAF9861711.1	9.23e-10	43.30	hypothetical protein H0E87_012824 [Populus deltoides]	[more]
XP_011025376.1	9.23e-10	43.30	PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Populus euphra...	[more]
XP_034933387.1	9.23e-10	43.30	pentatricopeptide repeat-containing protein At1g05600 [Populus alba] >TKS02054.1...	[more]

BLAST of MC07g0072 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5PX12	4.47e-10	43.30	Pentatricopeptide repeat-containing family protein OS=Populus alba OX=43335 GN=D...	[more]
A0A5N5NNS3	4.47e-10	43.30	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_003058 PE=4 SV=1	[more]
A0A6N2L9A7	4.47e-10	43.30	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS195456 PE=4 SV=...	[more]
A0A2K2BKH4	8.28e-10	42.27	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G179300 PE=4 ...	[more]
A0A2K2BKH6	8.34e-10	42.27	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G179300 PE=4 ...	[more]

BLAST of MC07g0072 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05600.1	4.8e-07	35.05	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G05600.2	4.8e-07	35.05	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g0072.1	MC07g0072.1	mRNA