MC07g0060 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g0060
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC07: 823083 .. 823367 (-)
RNA-Seq Expression	MC07g0060
Synteny	MC07g0060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGTCTTGGTCATCCTTTTTTCCATTGCTCCTTTGCATTACAGTTCTGGGGTCTTTTACTTTGTCAGTTCAACTTTGGGTGGGTTTTCAACCCGAAAGCAGAAGAAAATTTGTTCCAACTATTCTGCAGGCCTGTTTATTCTTCAACATCAGTTCGTCTTTTGCGGATTAATGTTGTCAAAGCATTACTTTTGGAACTATGGTATGAAAGGAATTTGCGGCTTTTCAAAGGCAAGAGCAAGTCCTTGATTGAGTGCTTCAATTCAACTAAGTACAAAGCTTCC

mRNA sequence

AAAAGTCTTGGTCATCCTTTTTTCCATTGCTCCTTTGCATTACAGTTCTGGGGTCTTTTACTTTGTCAGTTCAACTTTGGGTGGGTTTTCAACCCGAAAGCAGAAGAAAATTTGTTCCAACTATTCTGCAGGCCTGTTTATTCTTCAACATCAGTTCGTCTTTTGCGGATTAATGTTGTCAAAGCATTACTTTTGGAACTATGGTATGAAAGGAATTTGCGGCTTTTCAAAGGCAAGAGCAAGTCCTTGATTGAGTGCTTCAATTCAACTAAGTACAAAGCTTCC

Coding sequence (CDS)

AAAAGTCTTGGTCATCCTTTTTTCCATTGCTCCTTTGCATTACAGTTCTGGGGTCTTTTACTTTGTCAGTTCAACTTTGGGTGGGTTTTCAACCCGAAAGCAGAAGAAAATTTGTTCCAACTATTCTGCAGGCCTGTTTATTCTTCAACATCAGTTCGTCTTTTGCGGATTAATGTTGTCAAAGCATTACTTTTGGAACTATGGTATGAAAGGAATTTGCGGCTTTTCAAAGGCAAGAGCAAGTCCTTGATTGAGTGCTTCAATTCAACTAAGTACAAAGCTTCC

Protein sequence

KSLGHPFFHCSFALQFWGLLLCQFNFGWVFNPKAEENLFQLFCRPVYSSTSVRLLRINVVKALLLELWYERNLRLFKGKSKSLIECFNSTKYKAS

Homology

[Close]

BLAST of MC07g0060 vs. NCBI nr
Match: XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 3.06e-23
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 5   HPFFHCSFALQFWGLLLCQFNFGWVFNPKAEENLFQLFCRPVYSSTSVRLLRINVVKALL 64
           H FFHC FA + W LL  QFN  W F+ KA +N++QL   P + S+SVR L +NVVKALL
Sbjct: 85  HLFFHCYFASKCWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKALL 144

Query: 65  LELWYERNLRLFKGKSKSLIECFNSTKYKAS 95
            ELW+ERN RLF+ K +   E F S K+KAS
Sbjct: 145 SELWFERNSRLFEEKRRLFDESFYSAKFKAS 175

[Close]

BLAST of MC07g0060 vs. NCBI nr
Match: XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 7.93e-11
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 5   HPFFHCSFALQFWGLLLCQFNFGWVFNPKAEENLFQLFCRPVYSSTSVRLLRINVVKALL 64
           H FF C ++   W  LLC FN         + N+FQL  RP  S  S RLL  N VKALL
Sbjct: 200 HLFFTCPYSSWCWNKLLCFFNLPLTLCNDFKSNVFQLLARPT-SHKSTRLLWCNAVKALL 259

Query: 65  LELWYERNLRLFKGKSKSLIECFNSTKYKAS 95
            +LW+ERN R+F  K+ S  +   + + +AS
Sbjct: 260 ADLWFERNQRIFYNKATSCQDRLEAARRQAS 289

[Close]

BLAST of MC07g0060 vs. NCBI nr
Match: XP_020263008.1 (uncharacterized protein LOC109838990 [Asparagus officinalis])

HSP 1 Score: 51.2 bits (121), Expect = 7.15e-05
Identity = 24/82 (29.27%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 1   KSLGHPFFHCSFALQFWGLLLCQFNFGWVFNPKAEENLFQLFCRPVYSSTSVRLLRINVV 60
           +S  H FF CSF+ + W  ++   +F W     +  ++F  +C  +      + ++ + +
Sbjct: 415 ESRDHLFFECSFSKEVWNQIMDWLHFKW--RSCSWNSIFNWYCTKLRKKGIKQNIKRSAL 474

Query: 61  KALLLELWYERNLRLFKGKSKS 82
            A +  LWYERN+R F+  SKS
Sbjct: 475 SATIYHLWYERNMRTFQQVSKS 494

[Close]

BLAST of MC07g0060 vs. NCBI nr
Match: PON63797.1 (hypothetical protein TorRG33x02_275070 [Trema orientale])

HSP 1 Score: 48.9 bits (115), Expect = 1.12e-04
Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 1  KSLGHPFFHCSFALQFWGLLLCQFNFGWVFNPKAEENLFQLFCRPVYSSTSVRLLRINVV 60
          KSL H F HC F+L  W  +L +F   W   PKA ++L ++  + ++ +   R L     
Sbjct: 16 KSLNHLFLHCEFSLSLWCKILKEFGRSWAV-PKACQDLLRIG-QGLHLNRRGRTLWKVAA 75

Query: 61 KALLLELWYERNLRLFKGKSKSLIECFNS 89
           A L  LW ERN R+F+G    +++C  +
Sbjct: 76 LAGLWGLWLERNRRIFEG----VVDCLEA 98

[Close]

BLAST of MC07g0060 vs. NCBI nr
Match: PWA73751.1 (reverse transcriptase zinc-binding domain-containing protein [Artemisia annua])

HSP 1 Score: 48.9 bits (115), Expect = 1.53e-04
Identity = 28/82 (34.15%), Postives = 40/82 (48.78%), Query Frame = 0


Query: 2  SLGHPFFHCSFALQFWGLLLCQFNFGWVFNPKAEENLFQLFCRPVYSSTSVRLLRINVVK 61
          S  H FF C F  + W  + C    G  F P   + L Q       + T   +L+  ++ 
Sbjct: 12 SHPHLFFECDFPKEIWSRMKCLV--GLDFAPNNLQALIQFMVNRPVNKTIWSILQRLLIG 71

Query: 62 ALLLELWYERNLRLFKGKSKSL 83
          A +  LW ERNLR+F+GKS S+
Sbjct: 72 ACVYYLWQERNLRIFQGKSSSV 91

[Close]

BLAST of MC07g0060 vs. ExPASy TrEMBL
Match: A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.48e-23
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 5   HPFFHCSFALQFWGLLLCQFNFGWVFNPKAEENLFQLFCRPVYSSTSVRLLRINVVKALL 64
           H FFHC FA + W LL  QFN  W F+ KA +N++QL   P + S+SVR L +NVVKALL
Sbjct: 85  HLFFHCYFASKCWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKALL 144

Query: 65  LELWYERNLRLFKGKSKSLIECFNSTKYKAS 95
            ELW+ERN RLF+ K +   E F S K+KAS
Sbjct: 145 SELWFERNSRLFEEKRRLFDESFYSAKFKAS 175

[Close]

BLAST of MC07g0060 vs. ExPASy TrEMBL
Match: A0A2N9IQ17 (zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54337 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.16e-06
Identity = 32/85 (37.65%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 1   KSLGHPFFHCSFALQFWGLLLCQFNFGWVFNPKAEENLFQLFCRPVYSSTSVRLLRINVV 60
           +S+ H   HCSFA + W LL   F   WV  P +   LF  + R + S     L R    
Sbjct: 207 ESVDHLLLHCSFAKELWDLLFVMFGVHWVM-PHSVLELFACWPRRLGSLHRSVLWR-AAP 266

Query: 61  KALLLELWYERNLRLFKGKSKSLIE 85
             L+  +W ERN RLF+G  KS++E
Sbjct: 267 HCLMWCIWKERNARLFEGSEKSVVE 289

[Close]

BLAST of MC07g0060 vs. ExPASy TrEMBL
Match: A0A2N9GBZ1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24897 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.05e-05
Identity = 32/85 (37.65%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 1    KSLGHPFFHCSFALQFWGLLLCQFNFGWVFNPKAEENLFQLFCRPVYSSTSVRLLRINVV 60
            +S+ H   HCSFA + W LL   F   WV  P +   LF  + R + S     L R    
Sbjct: 1395 ESVDHLLLHCSFAKELWDLLFVMFGVHWVM-PHSVLELFACWPRRLGSLHRSVLWR-AAP 1454

Query: 61   KALLLELWYERNLRLFKGKSKSLIE 85
              L+  +W ERN RLF+G  KS++E
Sbjct: 1455 HCLMWCIWKERNARLFEGSEKSVVE 1477

[Close]

BLAST of MC07g0060 vs. ExPASy TrEMBL
Match: A0A2N9H127 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33390 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.06e-05
Identity = 32/85 (37.65%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 1    KSLGHPFFHCSFALQFWGLLLCQFNFGWVFNPKAEENLFQLFCRPVYSSTSVRLLRINVV 60
            +S+ H   HCSFA + W LL   F   WV  P +   LF  + R + S     L R    
Sbjct: 1647 ESVDHLLLHCSFAKELWDLLFVMFGVHWVM-PHSVLELFACWPRRLGSLHRSVLWR-AAP 1706

Query: 61   KALLLELWYERNLRLFKGKSKSLIE 85
              L+  +W ERN RLF+G  KS++E
Sbjct: 1707 HCLMWCIWKERNARLFEGSEKSVVE 1729

[Close]

BLAST of MC07g0060 vs. ExPASy TrEMBL
Match: A0A2N9G769 (SER_THR_PHOSPHATASE domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22943 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.33e-05
Identity = 32/85 (37.65%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 1   KSLGHPFFHCSFALQFWGLLLCQFNFGWVFNPKAEENLFQLFCRPVYSSTSVRLLRINVV 60
           +S+ H   HCSFA + W LL   F   WV  P +   LF  + R + S     L R    
Sbjct: 143 ESVEHLLLHCSFAKELWDLLFVMFGVHWVM-PHSVLELFACWPRRLGSLHRSVLWR-AAP 202

Query: 61  KALLLELWYERNLRLFKGKSKSLIE 85
             L+  +W ERN RLF+G  KS++E
Sbjct: 203 HCLMWCIWKERNARLFEGSEKSVVE 225

The following BLAST results are available for this feature:

BLAST of MC07g0060 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g0060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153214.1	3.06e-23	54.95	uncharacterized protein LOC111020765 [Momordica charantia]	[more]
XP_038903695.1	7.93e-11	41.76	uncharacterized protein LOC120090219 [Benincasa hispida]	[more]
XP_020263008.1	7.15e-05	29.27	uncharacterized protein LOC109838990 [Asparagus officinalis]	[more]
PON63797.1	1.12e-04	33.71	hypothetical protein TorRG33x02_275070 [Trema orientale]	[more]
PWA73751.1	1.53e-04	34.15	reverse transcriptase zinc-binding domain-containing protein [Artemisia annua]	[more]

BLAST of MC07g0060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIE2	1.48e-23	54.95	uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A2N9IQ17	9.16e-06	37.65	zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54337 P...	[more]
A0A2N9GBZ1	1.05e-05	37.65	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9H127	1.06e-05	37.65	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9G769	1.33e-05	37.65	SER_THR_PHOSPHATASE domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]

BLAST of MC07g0060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g0060.1	MC07g0060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity