MC06g_new0497 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g_new0497
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionCLAVATA3/ESR-RELATED
LocationMC06: 22903342 .. 22903796 (+)
RNA-Seq ExpressionMC06g_new0497
SyntenyMC06g_new0497
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCAATCTCTCTCTCTTCCAAAATTTTAGCACTATATGTTCAGTTGTTAATTATGTCAAGGAGAGAAGTGAGTTGGTTTTTGATAATCTTCTTATTATTGAGTGTTTCAAGTTTGAATTATGAGGTTTTTGGAGTGAGAAAGTTGAGGGAGAAAGTTGAAGAAGAAAGTTATGAAATTGGGAGCCCAAAATCCAACAAAAATGATGCCTTCTTTGCCACAACTTATAGAGCTGTTCCCTCTTGTCCAGACCCTCTTCACAACAGGTAGACTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTGCCTCCACAAATTAAAACCCTATTTTGGGTTTTATTTCAATTTCTTTTCTTGGTTACATGTGAATCAGAAATCTTCCCTTTATATATCTATATACTATCCTGCTAAATATCCTGTAAAGACAAAAATAAATGAGTACATGTATATATTTTG

mRNA sequence

ATGTCAAGGAGAGAAGTGAGTTGGTTTTTGATAATCTTCTTATTATTGAGTGTTTCAAGTTTGAATTATGAGGTTTTTGGAGTGAGAAAGTTGAGGGAGAAAGTTGAAGAAGAAAGTTATGAAATTGGGAGCCCAAAATCCAACAAAAATGATGCCTTCTTTGCCACAACTTATAGAGCTGTTCCCTCTTGTCCAGACCCTCTTCACAACAGGTAG

Coding sequence (CDS)

ATGTCAAGGAGAGAAGTGAGTTGGTTTTTGATAATCTTCTTATTATTGAGTGTTTCAAGTTTGAATTATGAGGTTTTTGGAGTGAGAAAGTTGAGGGAGAAAGTTGAAGAAGAAAGTTATGAAATTGGGAGCCCAAAATCCAACAAAAATGATGCCTTCTTTGCCACAACTTATAGAGCTGTTCCCTCTTGTCCAGACCCTCTTCACAACAGGTAG

Protein sequence

MSRREVSWFLIIFLLLSVSSLNYEVFGVRKLREKVEEESYEIGSPKSNKNDAFFATTYRAVPSCPDPLHNR
Homology
BLAST of MC06g_new0497 vs. NCBI nr
Match: KAG6646576.1 (hypothetical protein CIPAW_07G017000 [Carya illinoinensis] >KAG6702105.1 hypothetical protein I3842_07G017600 [Carya illinoinensis] >KAG7969142.1 hypothetical protein I3843_07G016400 [Carya illinoinensis])

HSP 1 Score: 65.5 bits (158), Expect = 4.89e-12
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 0

Query: 1  MSRREVSWFLIIFLLLSVSSLNYEVFGVRKLREKVEEESYEIGSPKSNKNDA----FFAT 60
          MSR +V   L+IFL  S+S+L+ EV G R L+EKVE         KS+ N A    FFA 
Sbjct: 3  MSRLQVRCLLLIFL--SISALHREVLGARNLKEKVENADKSQVLKKSSNNAANDQGFFAA 62

Query: 61 TYRAVPSCPDPLHNR 71
          + R VPSCPDPLHNR
Sbjct: 63 SKRQVPSCPDPLHNR 75

BLAST of MC06g_new0497 vs. NCBI nr
Match: KAG2695510.1 (hypothetical protein I3760_07G016600 [Carya illinoinensis])

HSP 1 Score: 63.2 bits (152), Expect = 4.00e-11
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 2  SRREVSWFLIIFLLLSVSSLNYEVFGVRKLREKVEEESYEIGSPKSNKNDA----FFATT 61
          SR +V   L+IFL  S+S+L+ EV G R L+EK+E         KS+ N A    FFA +
Sbjct: 4  SRSQVRCLLLIFL--SISALHREVLGARNLKEKMENADKSQVLKKSSNNAANDQGFFAAS 63

Query: 62 YRAVPSCPDPLHNR 71
           R VPSCPDPLHNR
Sbjct: 64 KRQVPSCPDPLHNR 75

BLAST of MC06g_new0497 vs. NCBI nr
Match: TYH46221.1 (hypothetical protein ES332_D11G320200v1 [Gossypium tomentosum] >TYI57798.1 hypothetical protein E1A91_D11G307200v1 [Gossypium mustelinum])

HSP 1 Score: 61.6 bits (148), Expect = 1.58e-10
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 2  SRREVSWFLIIFLLLSVSSLNYEVFGVRKLREKVEEESYEIGSPKS----NKNDAFFATT 61
          S+  + +FL+I  +LS+S+L   V G R L EKVE+E     S K     N +D FFAT 
Sbjct: 3  SKGLIGYFLLI--MLSISALKNGVLGTRLLAEKVEDEEKTERSWKDQNLDNGSDGFFATI 62

Query: 62 YRAVPSCPDPLHNR 71
           R VPSCPDPLHN+
Sbjct: 63 NREVPSCPDPLHNK 74

BLAST of MC06g_new0497 vs. NCBI nr
Match: KAG4122572.1 (hypothetical protein ERO13_D11G274500v2 [Gossypium hirsutum])

HSP 1 Score: 61.6 bits (148), Expect = 1.58e-10
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 2  SRREVSWFLIIFLLLSVSSLNYEVFGVRKLREKVEEESYEIGSPKS----NKNDAFFATT 61
          S+  + +FL+I  +LS+S+L   V G R L EKVE+E     S K     N +D FFAT 
Sbjct: 3  SKGLIGYFLLI--MLSISALKNGVLGTRLLAEKVEDEEKTERSWKDQNLENGSDGFFATI 62

Query: 62 YRAVPSCPDPLHNR 71
           R VPSCPDPLHN+
Sbjct: 63 NREVPSCPDPLHNK 74

BLAST of MC06g_new0497 vs. NCBI nr
Match: MBA0654371.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 61.2 bits (147), Expect = 2.19e-10
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 11 IIFLLLSVSSLNYEVFGVRKLREKVEEESYEIGSPKS----NKNDAFFATTYRAVPSCPD 70
          ++ ++LS+S+LN  V G R L EKVE+E     S K     N +D FFAT  R VPSCPD
Sbjct: 10 VLLIMLSISALNNGVLGARLLAEKVEDEEKTERSWKDQNLDNGSDGFFATINREVPSCPD 69

BLAST of MC06g_new0497 vs. ExPASy TrEMBL
Match: A0A5D2IU77 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D11G320200v1 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.67e-11
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 2  SRREVSWFLIIFLLLSVSSLNYEVFGVRKLREKVEEESYEIGSPKS----NKNDAFFATT 61
          S+  + +FL+I  +LS+S+L   V G R L EKVE+E     S K     N +D FFAT 
Sbjct: 3  SKGLIGYFLLI--MLSISALKNGVLGTRLLAEKVEDEEKTERSWKDQNLDNGSDGFFATI 62

Query: 62 YRAVPSCPDPLHNR 71
           R VPSCPDPLHN+
Sbjct: 63 NREVPSCPDPLHNK 74

BLAST of MC06g_new0497 vs. ExPASy TrEMBL
Match: A0A5D2T0X8 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D11G307200v1 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.67e-11
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 2  SRREVSWFLIIFLLLSVSSLNYEVFGVRKLREKVEEESYEIGSPKS----NKNDAFFATT 61
          S+  + +FL+I  +LS+S+L   V G R L EKVE+E     S K     N +D FFAT 
Sbjct: 3  SKGLIGYFLLI--MLSISALKNGVLGTRLLAEKVEDEEKTERSWKDQNLDNGSDGFFATI 62

Query: 62 YRAVPSCPDPLHNR 71
           R VPSCPDPLHN+
Sbjct: 63 NREVPSCPDPLHNK 74

BLAST of MC06g_new0497 vs. ExPASy TrEMBL
Match: A0A7J8UV42 (Uncharacterized protein (Fragment) OS=Gossypium klotzschianum OX=34286 GN=Goklo_021386 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.06e-10
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 11 IIFLLLSVSSLNYEVFGVRKLREKVEEESYEIGSPKS----NKNDAFFATTYRAVPSCPD 70
          ++ ++LS+S+LN  V G R L EKVE+E     S K     N +D FFAT  R VPSCPD
Sbjct: 10 VLLIMLSISALNNGVLGARLLAEKVEDEEKTERSWKDQNLDNGSDGFFATINREVPSCPD 69

BLAST of MC06g_new0497 vs. ExPASy TrEMBL
Match: A0A6A2YFI0 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111440pilonHSYRG00111 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.17e-10
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 11 IIFLLLSVSSLNYEVFGVRKLREKVEEESYEIGSPK------SNKNDAFFATTYRAVPSC 70
          ++F+ LS+S+LN  V G + LREKVE++  E    +       N  D FF T  R VPSC
Sbjct: 11 LLFMFLSISALNNGVLGAKFLREKVEDDEEETTERRWKYQNMDNGTDGFFETVEREVPSC 70

BLAST of MC06g_new0497 vs. ExPASy TrEMBL
Match: A0A5J5PGN4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D11G299700v1 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.19e-10
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 2  SRREVSWFLIIFLLLSVSSLNYEVFGVRKLREKVEEESYEIGSPKS----NKNDAFFATT 61
          S+  + +FL+I  +L++S+L   V G R L EKVE+E     S K     N +D FFAT 
Sbjct: 3  SKGLIGYFLLI--MLTISALKNGVLGTRLLAEKVEDEEKTERSWKDQNLDNGSDGFFATI 62

Query: 62 YRAVPSCPDPLHNR 71
           R VPSCPDPLHN+
Sbjct: 63 NREVPSCPDPLHNK 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6646576.14.89e-1252.00hypothetical protein CIPAW_07G017000 [Carya illinoinensis] >KAG6702105.1 hypothe... [more]
KAG2695510.14.00e-1150.00hypothetical protein I3760_07G016600 [Carya illinoinensis][more]
TYH46221.11.58e-1048.65hypothetical protein ES332_D11G320200v1 [Gossypium tomentosum] >TYI57798.1 hypot... [more]
KAG4122572.11.58e-1048.65hypothetical protein ERO13_D11G274500v2 [Gossypium hirsutum][more]
MBA0654371.12.19e-1051.56hypothetical protein [Gossypium klotzschianum][more]
Match NameE-valueIdentityDescription
A0A5D2IU777.67e-1148.65Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D11G320200v1 P... [more]
A0A5D2T0X87.67e-1148.65Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D11G307200v1 P... [more]
A0A7J8UV421.06e-1051.56Uncharacterized protein (Fragment) OS=Gossypium klotzschianum OX=34286 GN=Goklo_... [more]
A0A6A2YFI01.17e-1046.27Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111440pilon... [more]
A0A5J5PGN42.19e-1047.30Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D11G299700v1 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g_new0497.1MC06g_new0497.1mRNA