MC06g_new0194 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g_new0194
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationMC06: 9276679 .. 9279983 (-)
RNA-Seq ExpressionMC06g_new0194
SyntenyMC06g_new0194
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTAATCCTATTTCCACGCTTCTTCCACGCGTCAGTTTTTTGTTCGAATATCATTGGAGTTTTTTTTTTCGAATATCAGATAGCCCGTCGGAATACTCATTGGCATCTTTTTTTTTTTTTTTTGCCCTTCTCATTCGAGATCATGGCGGTTTCTACCCCAAATGCAACGAAAGATCTCAATGCACCAATATTTCTGCTTTCAAATATCTGTAATTTGGTGTTTCTTCGCCTTGATTATACTAATTTTATTCTTTGGAAGTTTCAATTAACTTCTATTCTCAAGGCTCACAAATTATACGGGCTTGTCGATGGCTCTACAGCAAAACCATCTGAGTTCTTGGCTGCTTCTTCATCTGATGCTGTTCCGTCACCTAATCTTGCATTCAGCGACTGGATCGCAAAAGATCATGTCCTAATGACCCTCATCAATGCGACTTTGTCTCCTGCTGCGTTGGCTTATGTGGTTGGTTGTTCATCTTCCAAGGAAGTGTGGGAAACCTTAATCCAGCACTATTCTTCAAATTCTCGTACTAATATTGTCAGTATTAAATCGGATCAGAGTTGCAATCAATTACCAAGAAGCATGATGAATTGATCGATTCTTATATCCAGCGTATCAATGAGTTGAAGGATAAACTTACCAATGTTTCTGTTCAAATTGATGATGAAGATCTCACTATCTATGCCCTAAATGGATTACCTTCTTATTATAATGCCTTCCGCACGTCAATGAGGACCCGCTCGCAACCTATCTCCTTCAACGAGCTTTATGTCCTTCTAGTCTCTGAGGCGTCTGCGATTAATCAACAATTGAATAAGGATGAGGTTTTTGCCTCTCCCTCTGCTCTTCTTGCAAATCAGACTCCCTCCAAGCATCAGAATGTAAATCCCAATATTTTGCAAGGTCGCGGTTTTACTGGCAGAGGAAAGTTTCAGAATTTTGGTTGATCGAAATCATCTCCTAGCTCTCTTCCTAGGCTATCCGTTAGATTATAAGGGATACTTGTGCTACAACATGAGCAATGGTCGACTCTATACCTCTCGCCATGTCATTTTTGATGAGTCTCTATTTCCTTTTTCTCTTCCTTCTTCACCTGCTAATTCTCCTCCTTCCTCTTCCTCGTATCAACTTCCTTTTTCTTTTTTTTTTCCCCTCTGATCCTTTACCTCTGTCACCTACCATGCCTCCCATTCCACCTATTTTACCTTCCACGTCTCCTATCCATCAGCCCAATCTAATATCATACCAACCTTGCCCCTTATCCCGCATACTTCACCTCATCCTCCATCTCCTTCACCTATTGAACCCAATTTCCATTCCACTACACCTATTCCTCCAAATTATACCTCTCTTTTATTACATCCCTCATTACCAACTCCTACACCTTCTTCACCTTGTCCGGTCATGCCTATGATCTCTGCTTCAGATCCGTTGATTCCTGATTTTGCAACTTCTGGGATAAATTCTCCTTCAGTAGTGACTATACCACATAATACTCATCCTATGCAGACTCATGCTAACTCGGGTATTTCCAAGAGGAAAGTGTTCATGGAAACCTCTCTACCTAGTTCCTCTGTTGAACCTACTTCGTTTATTGCGGCATTTAAGTTGTCTCTCTGGAGAGATGTCATGGCTGAGGAATATGATGCTTTAATTCGGCAAAATACTTGGGTTCTTGCTCCTCTCCTAGCAGGTAAAATAGCTATAGGCTGCAAATGGTTGTATCGTGTTAAACATCATCTCGTTGGAAGTGTTGCTAGACATAAAGCTAGGTTGGTTACCAAGGGGTTTCATCAAGAGGCAGTATTGACTATGAAGAAACCTTTAGCCCAGTTGTCAATTGAAACTCACTGTTCGCATTATTTTCTCTCTTGCTGCACAGTATGGCTGGTCTCTCCATCAATTGGATGTTAAAAACGCCATTCTCCATGGTGAACTTCAAGAGGAGGTGTTTATGCAACAACCTCAAGGGTTTGTTAGTTCTTCTCATACTCATTATGTGTGCAAGCTTTTAAAGTCACTCTATGGTTTAAAACAAGCTCCTTGGGTTTGGTTTGAATGTTTTACCTCTCATTTAATAACCCTTGGTTTTGAAGCTTCACATACTGATTCGTCCCTTTTTGTGCAGCATTTTGATGACTCTATCACATATCTCCTATTGTATATCGATGACATTATTATTATCGGCAGTCATCATGTTTATATTGATCAGCAGTTGATATCTCAGCTTCGTTTACGTTTTGAAATGACTGACTTGGGTGTCTTGCGGTATTTTCTTGGGCTTGAAGTTAGCCATTCTTCTATTGGGATATATGTTAATCAAGCTAAGTATGCTCGCGATGTGCTTATTCGGTTTGGTATGCTTGCTTCCAAACCTTGTCATACAACTATTGCTCTTACTGCTCCATCTGATGTTGGTTCCCCATGTACTGTCGAGGATGCTCATAATTATGGGGCTATGGTTGGTGCCTTGCAATATCTCACGTTTAGTCGACCAGATATCGCCTTTTCTGTTAGGAAGTTGTCTCAACATATGCATGCCCCTTTTTCATCTCATTTGATTACAGCCAAACGGGTATTGCGCTATATAAATGGTTCTCTTCATGTCAGTCTTTTGTTTAAGAAAGGTGGTTCTGTTGATGAAGCTCTTAGGCTTCGAGCCTTTTCTGATTCGGACTGGGCTGGTGACCCCTCTTATAGACGATCCACTACTGGATTTGTTGTTTTCTTGGACTCAAATCCCATATCTTGGGCTGTTAAGAAACAGACCACTGTTTCTCGGAGTTCTACGGAGGCTGAATACCGAGCTCTCGCCATCAACTGCTGTTGAAATTTCGTGGCTAAGACAGCTTCTTAAAGATTTTCGTCTCTTCAGCCCTTACCCGCCTGTCCTATACTATGACAATCTTTCCGCTCTTCAGCTTGCCAAAAATCTGGTCTTTCATAGTCGAACAAAACACATTGAAATTGACTTTCAAAGAAAGATCTTACATTGCAGTTTGTTCCTAGTACTCAGCAGCTTGTTGATATGTTGACTAAACCACTTACTTGTGATAGACTGGAGTTCTTCAAAGCCAAACTCATGCTTCCTTAGGCTGTTCATTTGCGGGGGATATTAAATTGATTACTACTATATTTACTTTTCTGTTATAAAATTAGTTGTTGTATCTGTTAGTGGTTATAATATTTCTCAAAGTCTTGTATCTGTATAAATACTATTAAAAGTCCTTCCAATAATGAAAAAGGTGAGTGGACATTTTCATTAATATGAAAGAATCTTTCAAGTTAATGGTTGGAAATATA

mRNA sequence

ATGCCTATGATCTCTGCTTCAGATCCGTTGATTCCTGATTTTGCAACTTCTGGGATAAATTCTCCTTCAGTAGTGACTATACCACATAATACTCATCCTATGCAGACTCATGCTAACTCGGGTATTTCCAAGAGGAAAGTGTTCATGGAAACCTCTCTACCTAGTTCCTCTGTTGAACCTACTTCGTTTATTGCGGCATTTAAGTTGTCTCTCTGGAGAGATGTCATGGCTGAGGAATATGATGCTTTAATTCGGCAAAATACTTGGGTTCTTGCTCCTCTCCTAGCAGTATGGCTGGTCTCTCCATCAATTGGATGTTAA

Coding sequence (CDS)

ATGCCTATGATCTCTGCTTCAGATCCGTTGATTCCTGATTTTGCAACTTCTGGGATAAATTCTCCTTCAGTAGTGACTATACCACATAATACTCATCCTATGCAGACTCATGCTAACTCGGGTATTTCCAAGAGGAAAGTGTTCATGGAAACCTCTCTACCTAGTTCCTCTGTTGAACCTACTTCGTTTATTGCGGCATTTAAGTTGTCTCTCTGGAGAGATGTCATGGCTGAGGAATATGATGCTTTAATTCGGCAAAATACTTGGGTTCTTGCTCCTCTCCTAGCAGTATGGCTGGTCTCTCCATCAATTGGATGTTAA

Protein sequence

MPMISASDPLIPDFATSGINSPSVVTIPHNTHPMQTHANSGISKRKVFMETSLPSSSVEPTSFIAAFKLSLWRDVMAEEYDALIRQNTWVLAPLLAVWLVSPSIGC
Homology
[Close]
BLAST of MC06g_new0194 vs. NCBI nr
Match: XP_022154343.1 (uncharacterized protein LOC111021626 [Momordica charantia])

HSP 1 Score: 192 bits (488), Expect = 1.91e-60
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MPMISASDPLIPDFATSGINSPSVVTIPHNTHPMQTHANSGISKRKVFMETSLPSSSVEP 60
           MPMISASDPLIPDFATSGINSPSVVTIPHNTHPMQTHANSGISKRKVFMETSLPSSSVEP
Sbjct: 1   MPMISASDPLIPDFATSGINSPSVVTIPHNTHPMQTHANSGISKRKVFMETSLPSSSVEP 60

Query: 61  TSFIAAFKLSLWRDVMAEEYDALIRQNTWVLAPLLAVWLVSPSIGC 106
           TSFIAAFKLSLWRDVMAEEYDALIRQNTWVLAPLLA  +   +IGC
Sbjct: 61  TSFIAAFKLSLWRDVMAEEYDALIRQNTWVLAPLLAGKI---AIGC 103

[Close]
BLAST of MC06g_new0194 vs. NCBI nr
Match: TQE09310.1 (hypothetical protein C1H46_005046 [Malus baccata])

HSP 1 Score: 78.2 bits (191), Expect = 3.76e-14
Identity = 44/90 (48.89%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 6   ASDPLIPDFATSGINSPSVVTIPH-NTHPMQTHANSGISKRKVFMETSLPSSSVEPTSFI 65
           +S  L PD   S  +    V+I   NTHPMQT + SGISK+K     ++ S   EP S+ 
Sbjct: 532 SSSELYPDIRMSQASELQQVSIGAVNTHPMQTRSKSGISKKKTAFSVAVQSGDQEPQSYS 591

Query: 66  AAFKLSLWRDVMAEEYDALIRQNTWVLAPL 94
           AA KLS WRD M EE  AL +QNTW L PL
Sbjct: 592 AACKLSHWRDAMQEEMTALRQQNTWTLVPL 621

[Close]
BLAST of MC06g_new0194 vs. NCBI nr
Match: KAA0054997.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 7.91e-12
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 0 

Query: 30  NTHPMQTHANSGISKRKVFME-TSLPSSSV---EPTSFIAAFKLSLWRDVMAEEYDALIR 89
           N HP QT + SGISK+KVF+  T LP +SV   EP+S+  A K  +W++ M EEYDAL++
Sbjct: 41  NAHPKQTRSKSGISKKKVFVAATHLPKNSVDENEPSSYTQASKDLVWQNAMKEEYDALLK 100

Query: 90  QNTWVLAPLLAVWLVSPSIGC 106
           Q TW L  L       P+IGC
Sbjct: 101 QGTWKLTSLPPN---KPAIGC 118

[Close]
BLAST of MC06g_new0194 vs. NCBI nr
Match: CAN78451.1 (hypothetical protein VITISV_005945 [Vitis vinifera])

HSP 1 Score: 70.9 bits (172), Expect = 1.38e-11
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0 

Query: 9   PLIP-DFATSGINSPSVVTIPHNTHPMQTHANSGISKRKVFMETSLPSSSVEPTSFIAAF 68
           PLIP  FATS   +PS   +P NTHPM T A SGI K++ F    +   + EP ++  AF
Sbjct: 158 PLIPVPFATSSPAAPSPPPLPLNTHPMVTRAKSGIHKKRSF----IVQHTTEPRTYSQAF 217

Query: 69  KLSLWRDVMAEEYDALIRQNTWVLAP 93
           K   W   M  EY AL+R NTW L P
Sbjct: 218 KNDSWVQAMNSEYQALLRNNTWSLVP 239

[Close]
BLAST of MC06g_new0194 vs. NCBI nr
Match: TYK17991.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.06e-11
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 0 

Query: 30  NTHPMQTHANSGISKRKVFME-TSLPSSSV---EPTSFIAAFKLSLWRDVMAEEYDALIR 89
           N HPMQT + SGISK+KVF+  T LP +SV   E +S+  A K  +W++ M EEYDAL++
Sbjct: 41  NAHPMQTRSKSGISKKKVFVAATHLPKNSVDENESSSYTQASKDLVWQNAMKEEYDALLK 100

Query: 90  QNTWVLAPLLAVWLVSPS---IGC 106
           Q TW L  L      SP+   IGC
Sbjct: 101 QGTWKLTSL------SPNKTAIGC 118

[Close]
BLAST of MC06g_new0194 vs. ExPASy TrEMBL
Match: A0A6J1DK27 (uncharacterized protein LOC111021626 OS=Momordica charantia OX=3673 GN=LOC111021626 PE=4 SV=1)

HSP 1 Score: 192 bits (488), Expect = 9.25e-61
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MPMISASDPLIPDFATSGINSPSVVTIPHNTHPMQTHANSGISKRKVFMETSLPSSSVEP 60
           MPMISASDPLIPDFATSGINSPSVVTIPHNTHPMQTHANSGISKRKVFMETSLPSSSVEP
Sbjct: 1   MPMISASDPLIPDFATSGINSPSVVTIPHNTHPMQTHANSGISKRKVFMETSLPSSSVEP 60

Query: 61  TSFIAAFKLSLWRDVMAEEYDALIRQNTWVLAPLLAVWLVSPSIGC 106
           TSFIAAFKLSLWRDVMAEEYDALIRQNTWVLAPLLA  +   +IGC
Sbjct: 61  TSFIAAFKLSLWRDVMAEEYDALIRQNTWVLAPLLAGKI---AIGC 103

[Close]
BLAST of MC06g_new0194 vs. ExPASy TrEMBL
Match: A0A540NFL3 (Integrase catalytic domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_005046 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.82e-14
Identity = 44/90 (48.89%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 6   ASDPLIPDFATSGINSPSVVTIPH-NTHPMQTHANSGISKRKVFMETSLPSSSVEPTSFI 65
           +S  L PD   S  +    V+I   NTHPMQT + SGISK+K     ++ S   EP S+ 
Sbjct: 532 SSSELYPDIRMSQASELQQVSIGAVNTHPMQTRSKSGISKKKTAFSVAVQSGDQEPQSYS 591

Query: 66  AAFKLSLWRDVMAEEYDALIRQNTWVLAPL 94
           AA KLS WRD M EE  AL +QNTW L PL
Sbjct: 592 AACKLSHWRDAMQEEMTALRQQNTWTLVPL 621

[Close]
BLAST of MC06g_new0194 vs. ExPASy TrEMBL
Match: A0A5A7UKB0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001460 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.83e-12
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 0 

Query: 30  NTHPMQTHANSGISKRKVFME-TSLPSSSV---EPTSFIAAFKLSLWRDVMAEEYDALIR 89
           N HP QT + SGISK+KVF+  T LP +SV   EP+S+  A K  +W++ M EEYDAL++
Sbjct: 41  NAHPKQTRSKSGISKKKVFVAATHLPKNSVDENEPSSYTQASKDLVWQNAMKEEYDALLK 100

Query: 90  QNTWVLAPLLAVWLVSPSIGC 106
           Q TW L  L       P+IGC
Sbjct: 101 QGTWKLTSLPPN---KPAIGC 118

[Close]
BLAST of MC06g_new0194 vs. ExPASy TrEMBL
Match: A5AXV2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_005945 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.66e-12
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0 

Query: 9   PLIP-DFATSGINSPSVVTIPHNTHPMQTHANSGISKRKVFMETSLPSSSVEPTSFIAAF 68
           PLIP  FATS   +PS   +P NTHPM T A SGI K++ F    +   + EP ++  AF
Sbjct: 158 PLIPVPFATSSPAAPSPPPLPLNTHPMVTRAKSGIHKKRSF----IVQHTTEPRTYSQAF 217

Query: 69  KLSLWRDVMAEEYDALIRQNTWVLAP 93
           K   W   M  EY AL+R NTW L P
Sbjct: 218 KNDSWVQAMNSEYQALLRNNTWSLVP 239

[Close]
BLAST of MC06g_new0194 vs. ExPASy TrEMBL
Match: A0A5D3D170 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003000 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.97e-12
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 0 

Query: 30  NTHPMQTHANSGISKRKVFME-TSLPSSSV---EPTSFIAAFKLSLWRDVMAEEYDALIR 89
           N HPMQT + SGISK+KVF+  T LP +SV   E +S+  A K  +W++ M EEYDAL++
Sbjct: 41  NAHPMQTRSKSGISKKKVFVAATHLPKNSVDENESSSYTQASKDLVWQNAMKEEYDALLK 100

Query: 90  QNTWVLAPLLAVWLVSPS---IGC 106
           Q TW L  L      SP+   IGC
Sbjct: 101 QGTWKLTSL------SPNKTAIGC 118

The following BLAST results are available for this feature:
BLAST of MC06g_new0194 vs.
Match NameE-valueIdentityDescription
BLAST of MC06g_new0194 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154343.11.91e-6093.40uncharacterized protein LOC111021626 [Momordica charantia][more]
TQE09310.13.76e-1448.89hypothetical protein C1H46_005046 [Malus baccata][more]
KAA0054997.17.91e-1249.38putative mitochondrial protein [Cucumis melo var. makuwa][more]
CAN78451.11.38e-1146.51hypothetical protein VITISV_005945 [Vitis vinifera][more]
TYK17991.12.06e-1148.81putative mitochondrial protein [Cucumis melo var. makuwa][more]
BLAST of MC06g_new0194 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DK279.25e-6193.40uncharacterized protein LOC111021626 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A540NFL31.82e-1448.89Integrase catalytic domain-containing protein OS=Malus baccata OX=106549 GN=C1H4... [more]
A0A5A7UKB03.83e-1249.38Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A5AXV26.66e-1246.51Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera... [more]
A0A5D3D1709.97e-1248.81Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
BLAST of MC06g_new0194 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g_new0194.1MC06g_new0194.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0016740 transferase activity