MC06g2155 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g2155
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Low temperature and salt responsive protein
Location	MC06: 28979991 .. 28980229 (+)
RNA-Seq Expression	MC06g2155
Synteny	MC06g2155

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGGCACAACAAACTGCATCGACATCCTACTGGCCATCATCTTGCCCCCTCTTGGTGTCTTCCTCAAGTTTGGCTGCCATGTAATTTCTCTCTTTCTTCTTCATTGCTTCGTTTCAATAACACTTAATTCATTCCCTTTTACTACTGCACTCCTCAGGTTGAGTTCTGGATCTGTCTCGTCCTCACTTTCTTTGGCTACATCCCCGGGATTATCTACGCCGTTTACGCCATCACCAAG

mRNA sequence

GAGGGCACAACAAACTGCATCGACATCCTACTGGCCATCATCTTGCCCCCTCTTGGTGTCTTCCTCAAGTTTGGCTGCCATGTTGAGTTCTGGATCTGTCTCGTCCTCACTTTCTTTGGCTACATCCCCGGGATTATCTACGCCGTTTACGCCATCACCAAG

Coding sequence (CDS)

GAGGGCACAACAAACTGCATCGACATCCTACTGGCCATCATCTTGCCCCCTCTTGGTGTCTTCCTCAAGTTTGGCTGCCATGTTGAGTTCTGGATCTGTCTCGTCCTCACTTTCTTTGGCTACATCCCCGGGATTATCTACGCCGTTTACGCCATCACCAAG

Protein sequence

EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK

Homology

[Close]

BLAST of MC06g2155 vs. ExPASy Swiss-Prot
Match: A2Y075 (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 3.0e-20
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 2  GTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 55
          GT NCIDIL+AIILPPLGVFLKFGC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

[Close]

BLAST of MC06g2155 vs. ExPASy Swiss-Prot
Match: Q0DKW8 (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6B PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.0e-20
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 2  GTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 55
          GT NCIDIL+AIILPPLGVFLKFGC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

[Close]

BLAST of MC06g2155 vs. ExPASy Swiss-Prot
Match: Q8H5T6 (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6A PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-19
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 55
          + T  CIDI+LAIILPPLGVF KFGC +EFWICL+LTFFGY+PGIIYAV+ ITK
Sbjct: 3  DSTATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56

[Close]

BLAST of MC06g2155 vs. ExPASy Swiss-Prot
Match: Q9ZNS6 (Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.0e-17
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 3  TTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 55
          T   ++I+LAIILPPLGVFLKFGC VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

[Close]

BLAST of MC06g2155 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-16
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 3  TTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 55
          T   +DI++AI+LPPLGVFL+FGC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

[Close]

BLAST of MC06g2155 vs. NCBI nr
Match: XP_022159517.1 (hydrophobic protein LTI6B [Momordica charantia])

HSP 1 Score: 112 bits (281), Expect = 2.58e-31
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 54
          EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 3  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 56

[Close]

BLAST of MC06g2155 vs. NCBI nr
Match: XP_004494506.1 (hydrophobic protein LTI6B-like [Cicer arietinum])

HSP 1 Score: 109 bits (273), Expect = 4.41e-30
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 54
          EGT NCIDILLAI+LPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYA+YAITK
Sbjct: 4  EGTANCIDILLAILLPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAIYAITK 57

[Close]

BLAST of MC06g2155 vs. NCBI nr
Match: KGN65991.1 (hypothetical protein Csa_007015 [Cucumis sativus])

HSP 1 Score: 108 bits (271), Expect = 8.90e-30
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 54
          EGTTNCIDILLAI+LPPLGVFLKFGC VEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 4  EGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of MC06g2155 vs. NCBI nr
Match: WP_170076060.1 (YqaE/Pmp3 family membrane protein [Paraclostridium dentum])

HSP 1 Score: 107 bits (266), Expect = 5.16e-29
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 54
          EGT NC+DIL+AI+LPPLGVFLKFGCHVEFWICL+LTFFGYIPGIIYA+YAITK
Sbjct: 4  EGTLNCVDILIAILLPPLGVFLKFGCHVEFWICLLLTFFGYIPGIIYAIYAITK 57

[Close]

BLAST of MC06g2155 vs. NCBI nr
Match: XP_008450512.1 (PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo])

HSP 1 Score: 105 bits (263), Expect = 1.48e-28
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 54
          E TTNCIDILLAI+LPPLGVFLKFGC VEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 4  ERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of MC06g2155 vs. ExPASy TrEMBL
Match: A0A6J1E024 (hydrophobic protein LTI6B OS=Momordica charantia OX=3673 GN=LOC111025912 PE=3 SV=1)

HSP 1 Score: 112 bits (281), Expect = 1.25e-31
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 54
          EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 3  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 56

[Close]

BLAST of MC06g2155 vs. ExPASy TrEMBL
Match: A0A1S2XTZ3 (hydrophobic protein LTI6B-like OS=Cicer arietinum OX=3827 GN=LOC101498830 PE=3 SV=1)

HSP 1 Score: 109 bits (273), Expect = 2.13e-30
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 54
          EGT NCIDILLAI+LPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYA+YAITK
Sbjct: 4  EGTANCIDILLAILLPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAIYAITK 57

[Close]

BLAST of MC06g2155 vs. ExPASy TrEMBL
Match: A0A0A0M1D6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560745 PE=3 SV=1)

HSP 1 Score: 108 bits (271), Expect = 4.31e-30
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 54
          EGTTNCIDILLAI+LPPLGVFLKFGC VEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 4  EGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of MC06g2155 vs. ExPASy TrEMBL
Match: A0A2K3L766 (Hydrophobic protein LTI6A-like OS=Trifolium pratense OX=57577 GN=L195_g030288 PE=3 SV=1)

HSP 1 Score: 105 bits (263), Expect = 7.18e-29
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 54
          EGT NCIDILLAIILPPLGVFLKFGC+VEFWICLVLT FGYIPGIIYAVYAITK
Sbjct: 4  EGTANCIDILLAIILPPLGVFLKFGCNVEFWICLVLTLFGYIPGIIYAVYAITK 57

[Close]

BLAST of MC06g2155 vs. ExPASy TrEMBL
Match: A0A1S3BNR9 (hydrophobic protein LTI6B-like OS=Cucumis melo OX=3656 GN=LOC103492093 PE=3 SV=1)

HSP 1 Score: 105 bits (263), Expect = 7.18e-29
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  EGTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 54
          E TTNCIDILLAI+LPPLGVFLKFGC VEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 4  ERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of MC06g2155 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 86.7 bits (213), Expect = 6.4e-18
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 3  TTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 55
          T   ++I+LAIILPPLGVFLKFGC VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

[Close]

BLAST of MC06g2155 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-17
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 3  TTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 55
          T   +DI++AI+LPPLGVFL+FGC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

[Close]

BLAST of MC06g2155 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-15
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 2  GTTNCIDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAI 53
          G+   ++I+LAI+LPP+GVFL++GC VEFWICL+LT  GYIPGIIYA+Y +
Sbjct: 2  GSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

[Close]

BLAST of MC06g2155 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-12
Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 7  IDILLAIILPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAVYAITK 55
          +++L AI +PP+GVFL++G  +EFW+CL+LT F +IPG+IYA+Y +TK
Sbjct: 5  LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

[Close]

BLAST of MC06g2155 vs. TAIR 10
Match: AT4G28088.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-11
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 2  GTTNCIDILLAIILPPLGVFLKFG-CHVEFWICLVLTFFGYIPGIIYAVYAI 53
          G   C +I++AI++PPLGV L+ G C  EF ICL+LT  GY+PGIIYA+YAI
Sbjct: 4  GCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAI 55

The following BLAST results are available for this feature:

BLAST of MC06g2155 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2Y075	3.0e-20	86.79	Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 S...	[more]
Q0DKW8	3.0e-20	86.79	Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6B PE=2...	[more]
Q8H5T6	4.3e-19	77.78	Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6A PE=2...	[more]
Q9ZNS6	9.0e-17	75.00	Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1	[more]
Q9ZNQ7	2.6e-16	73.08	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]

BLAST of MC06g2155 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159517.1	2.58e-31	100.00	hydrophobic protein LTI6B [Momordica charantia]	[more]
XP_004494506.1	4.41e-30	94.44	hydrophobic protein LTI6B-like [Cicer arietinum]	[more]
KGN65991.1	8.90e-30	96.30	hypothetical protein Csa_007015 [Cucumis sativus]	[more]
WP_170076060.1	5.16e-29	88.89	YqaE/Pmp3 family membrane protein [Paraclostridium dentum]	[more]
XP_008450512.1	1.48e-28	94.44	PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo]	[more]

BLAST of MC06g2155 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E024	1.25e-31	100.00	hydrophobic protein LTI6B OS=Momordica charantia OX=3673 GN=LOC111025912 PE=3 SV...	[more]
A0A1S2XTZ3	2.13e-30	94.44	hydrophobic protein LTI6B-like OS=Cicer arietinum OX=3827 GN=LOC101498830 PE=3 S...	[more]
A0A0A0M1D6	4.31e-30	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560745 PE=3 SV=1	[more]
A0A2K3L766	7.18e-29	94.44	Hydrophobic protein LTI6A-like OS=Trifolium pratense OX=57577 GN=L195_g030288 PE...	[more]
A0A1S3BNR9	7.18e-29	94.44	hydrophobic protein LTI6B-like OS=Cucumis melo OX=3656 GN=LOC103492093 PE=3 SV=1	[more]

BLAST of MC06g2155 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05890.1	6.4e-18	75.00	Low temperature and salt responsive protein family	[more]
AT3G05880.1	1.9e-17	73.08	Low temperature and salt responsive protein family	[more]
AT2G38905.1	5.1e-15	64.71	Low temperature and salt responsive protein family	[more]
AT1G57550.1	2.4e-12	56.25	Low temperature and salt responsive protein family	[more]
AT4G28088.1	3.4e-11	59.62	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 6..52 e-value: 3.4E-20 score: 72.0
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..54
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 10..25
None	No IPR available	PANTHER	PTHR21659:SF81	LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g2155.1	MC06g2155.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane