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MC06g1901 (gene) Bitter gourd (Dali-11) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CGTCAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCGATTAGAGGAACTTTGCACTCTGTCGATCAATATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGGTATCTAACTTCTTTACTTGTATTATATTTAAGCGATATAATTGATTGATTATTTTTTGCGCTCACGCATTGTGATGAGACCTGCGTTTTTGACGGATTTGTTTTTATTTGTTTAGGTTTAAAATTTATGATTGGCACCTTCATTCTCTTCATTTCTGCTTAATTTTTATTCCCCTTACCTCTTTATGCTCGTTTCATTCTATTAATTGACATATTATTCTGTGGCGAGATGTATGATATATGGTTACAGTTCACAGATTATTTGTAGCACCGTTTGATATCGTCACCTTAACATTTAAATTATGTACTGTCTAAATTGAGAACATTGATTGTCTTTTCATCCATTTCCCTTTCTTGAATTTTCTTTAGGGGAAGATTTCTAGTAGTAACTTTGTGGGTGGTTCCCAATTTCGGTGGAGTTCTCTAATGTCACTTGGCTAGAAATCCTATCAGGGACCATTTGTTTCTTTCTTGCTGATTTTGAAGGGGAAGGGTAACAAGGTTTTGGATTATATTTAGTGCGAGTCTTGTTTATGTTTTTCTTTGTGGATAACGAGGACATTTCACTCCTAATCTAAATTTTCGATACAAGTAAAAAATTATCAGTGTGATAACTTTGACGATGGTAAAGGTCAACGTAGCACTTAGGTTCTCTGAATCTGTTATATATATTTATATAGTACATAAATGTGGAGATGGGAGATAAAATAATTCAGCATTATGGAAGGGAAGGTAGTAGGTGGCTTATCTATAGAGCTATGCTCGGATTGACTATGAATCTATTATATTTTTTTGGAATCAATCAATGTGAATTGTTTAAGAGAGAAGTGGGAAGCATTTGTGAAAGTAGAGGGTTTCCTGGTTGAGCTTAATTTGATTTTCTAATCCCACTAGGAATCTAAAAGACTAGTTCTTATGGACTATCAGGTGCATGTGGTCTCTAGTTCATGATTTTTTCCCCAACTACTCAACTTCTGATGTAGGAGATTAGTAGAATTTGTTTGGTATTAATTGTTGTTTTTTAGCTACAATTTATTAATTATTTTTAGTTGGAGATTGATATGTTTGCCAAGTAGTTTTGTGGATTAATTGCTTTTAGTTAGTTAGTTAGTTTTTCTATTTGTTAGTTAGCTAAGCTACCTCTTGTCCTCTATAAATAAAGGATGATCATCTTCAAAACTTTTTGAATCGGGTAGAGTTTTTTGTTCCGGAGCCTAAATGCCAGTTGCGTTACTAACGAGTGGGGAAGAACACTCATTTAATACTCATGCAGATACATGAAGAGGCCGAGAAAATTTTTTTTGAACAAGATACAGAAGAGGCCAATAAATAGTGGTTACAGAAATGGACCATCTTCAGACAAATCAGACCAAAAACACTCGTTTTGTATCAAGAATGTAGTTTTATAGATTGTGTAACTAAATGTATAGCCTAAGTGCTGTGGTGGTTTTTTGTTTTTTGAACCAAAACTTAGTTTAATACTACTTATTACAAAGGTACCATCTTCTTTCTTTAGCCTGTCTGTTCAATATCTGTTTTCTGATAGAATTTAAATTCTCCTGTGGCTTCCTGTAAGGCCACGGTTTTGAAGAAAGAGTAAAATTTTGAAACCAATAATGGCCATGGTGTGTAAACTTTGGTTTAAAAGATACCATATGATGGGCATTGGATATATAAGAATGAGTTTGCAGTGTAGGAACGGGAACTTTGCCTTTTTTCCCAGCATCTAGTTCTTGTTCATTGTGGAATGAATTTTGTTTTTATTCTCCTTTCTTGATACAAGCCAATCTGAAATTACACTTCGGTCACATAACAAAAAGTCTGAACTGTAGGGGGTAGGAAGGCTTACTGTTGTTGCCTGTTGGTTGCCGATTCTTTTATGGTTGGTGAATACTCTCTGTTTTTACGTGACCAAGGACATCTGCAAATTTCTAATATATATAAGAAAGAAGAAAGAAAAATGAACATCTGAAAATCCATTTTTTCATTTTGTTCTGCTCTGTGGTCTTAAATTTACTGAGCCCCCAATCCATTCTGTAATCTGCTGCCTGTAATTTTGTTGTTGTCTTGAACTAATCGTGCAAAATTTCTCTCATTTCAGCTTTCAGTGAGAAACTGTTTTATCAGGGGGTCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATCGAGCTCTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGC CGTCAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCGATTAGAGGAACTTTGCACTCTGTCGATCAATATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTGTTTTATCAGGGGGTCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATCGAGCTCTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGC CGTCAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCGATTAGAGGAACTTTGCACTCTGTCGATCAATATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTGTTTTATCAGGGGGTCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATCGAGCTCTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGC RQLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG Homology
BLAST of MC06g1901 vs. ExPASy Swiss-Prot
Match: Q1H595 (Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.6e-45 Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of MC06g1901 vs. ExPASy Swiss-Prot
Match: Q9Y333 (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 9.2e-33 Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of MC06g1901 vs. ExPASy Swiss-Prot
Match: O35900 (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 9.2e-33 Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of MC06g1901 vs. ExPASy Swiss-Prot
Match: Q54TF6 (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX=44689 GN=lsm2 PE=3 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 3.3e-30 Identity = 60/90 (66.67%), Postives = 77/90 (85.56%), Query Frame = 0
BLAST of MC06g1901 vs. ExPASy Swiss-Prot
Match: P38203 (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSM2 PE=1 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 1.7e-26 Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 0
BLAST of MC06g1901 vs. NCBI nr
Match: MBA0708852.1 (hypothetical protein [Gossypium laxum]) HSP 1 Score: 192 bits (489), Expect = 7.13e-62 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MC06g1901 vs. NCBI nr
Match: CAA2970238.1 (sm LSM2 [Olea europaea subsp. europaea] >CAA3028287.1 sm LSM2 [Olea europaea subsp. europaea]) HSP 1 Score: 191 bits (486), Expect = 2.11e-61 Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MC06g1901 vs. NCBI nr
Match: MBA0715229.1 (hypothetical protein [Gossypium laxum]) HSP 1 Score: 191 bits (485), Expect = 3.00e-61 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MC06g1901 vs. NCBI nr
Match: PSR94797.1 (Sm-like protein LSM2, partial [Actinidia chinensis var. chinensis] >PSS14639.1 Sm-like protein LSM2, partial [Actinidia chinensis var. chinensis]) HSP 1 Score: 191 bits (484), Expect = 4.00e-61 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of MC06g1901 vs. NCBI nr
Match: XP_010038129.1 (sm-like protein LSM2 [Eucalyptus grandis] >XP_012473956.1 PREDICTED: sm-like protein LSM2 [Gossypium raimondii] >XP_016739463.2 sm-like protein LSM2 [Gossypium hirsutum] >XP_017617356.1 PREDICTED: sm-like protein LSM2 [Gossypium arboreum] >XP_017983243.1 PREDICTED: sm-like protein LSM2 [Theobroma cacao] >XP_021279792.1 sm-like protein LSM2 [Herrania umbratica] >XP_022155587.1 sm-like protein LSM2 [Momordica charantia] >XP_022159883.1 sm-like protein LSM2 [Momordica charantia] >XP_022771071.1 sm-like protein LSM2 [Durio zibethinus] >XP_022931098.1 sm-like protein LSM2 [Cucurbita moschata] >XP_022995665.1 sm-like protein LSM2 [Cucurbita maxima] >XP_023533254.1 sm-like protein LSM2 [Cucurbita pepo subsp. pepo] >XP_028067379.1 sm-like protein LSM2 [Camellia sinensis] >XP_028090491.1 sm-like protein LSM2 [Camellia sinensis] >XP_030451694.1 sm-like protein LSM2 [Syzygium oleosum] >XP_030514491.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_030516641.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_030516643.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_031373487.1 sm-like protein LSM2 [Punica granatum] >XP_038708368.1 sm-like protein LSM2 [Tripterygium wilfordii] >XP_038900043.1 sm-like protein LSM2 [Benincasa hispida] >XP_038900044.1 sm-like protein LSM2 [Benincasa hispida] >XP_039012105.1 sm-like protein LSM2 [Hibiscus syriacus] >XP_039013864.1 sm-like protein LSM2 [Hibiscus syriacus] >XP_039025119.1 sm-like protein LSM2 [Hibiscus syriacus] >KAB2016243.1 hypothetical protein ES319_D08G082900v1 [Gossypium barbadense] >KAF8006546.1 hypothetical protein BT93_K0754 [Corymbia citriodora subsp. variegata] >KAG6606434.1 Sm-like protein LSM2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036376.1 Sm-like protein LSM2 [Cucurbita argyrosperma subsp. argyrosperma] >TYG56740.1 hypothetical protein ES288_D08G087800v1 [Gossypium darwinii] >TYH57396.1 hypothetical protein ES332_D08G086900v1 [Gossypium tomentosum] >TYI68372.1 hypothetical protein E1A91_D08G085000v1 [Gossypium mustelinum]) HSP 1 Score: 191 bits (484), Expect = 4.13e-61 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of MC06g1901 vs. ExPASy TrEMBL
Match: A0A7J8ZBA4 (Sm domain-containing protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_023938 PE=3 SV=1) HSP 1 Score: 192 bits (489), Expect = 3.45e-62 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MC06g1901 vs. ExPASy TrEMBL
Match: A0A7J8ZVA2 (Sm-like protein LSM2 OS=Gossypium laxum OX=34288 GN=Golax_014140 PE=3 SV=1) HSP 1 Score: 191 bits (485), Expect = 1.45e-61 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MC06g1901 vs. ExPASy TrEMBL
Match: F6HQ57 (Sm-like protein LSM2 OS=Vitis vinifera OX=29760 GN=VIT_07s0104g00560 PE=3 SV=1) HSP 1 Score: 191 bits (485), Expect = 1.59e-61 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MC06g1901 vs. ExPASy TrEMBL
Match: A0A2R6QU42 (Sm-like protein LSM2 (Fragment) OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc15206 PE=3 SV=1) HSP 1 Score: 191 bits (484), Expect = 1.94e-61 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of MC06g1901 vs. ExPASy TrEMBL
Match: A0A5D2BJZ3 (Sm-like protein LSM2 OS=Gossypium darwinii OX=34276 GN=ES288_A08G082400v1 PE=3 SV=1) HSP 1 Score: 191 bits (484), Expect = 2.00e-61 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of MC06g1901 vs. TAIR 10
Match: AT1G03330.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 183.0 bits (463), Expect = 1.1e-46 Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of MC06g1901 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04 Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of MC06g1901 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04 Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of MC06g1901 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04 Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of MC06g1901 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 41.2 bits (95), Expect = 5.4e-04 Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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