MC06g1488 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1488
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	CST complex subunit STN1
Location	MC06: 22197490 .. 22197966 (-)
RNA-Seq Expression	MC06g1488
Synteny	MC06g1488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCGCCACGTTAAGCTCCTGGGTTTTGACCTTCTTTCACTCACTCAAACTTCATCTTCTTCCTCCTCCGATGCCGTCTCCTTCTCTCGCAAAGGCCACGCCGTCTCCTGTGCAGAGATCGTCGGCGTCGTGGTCTCCCGTGACCTCAAACCCAACAGATTTCTCAAGTTTTCCGTCGACGATGGCACCGGCTGTGTTAGCTGTATTCTATGGCTCAATCAGCTGAGCTCGCCTTACTTTGCAAGCCGGCGCCCACCAGATGTTCGAATAATTGCTAATATGGCGACCCATTTCGCTGCCCAAATTAGGGTTGGGATTGTTGGTAGAGTCCGGGGGAAGGTCACCAGCTATAGGGGCGTGGTGCAGATCACGGTGTCAGATGTTGTGGTTGAGGATGACCCAAATGCTCAGATTCTGCATTGGTTGGATTGCATGAGGTTGGCTCTAAAGTGTTATGACCTCTTGCCTACACCCACA

mRNA sequence

CACCGCCACGTTAAGCTCCTGGGTTTTGACCTTCTTTCACTCACTCAAACTTCATCTTCTTCCTCCTCCGATGCCGTCTCCTTCTCTCGCAAAGGCCACGCCGTCTCCTGTGCAGAGATCGTCGGCGTCGTGGTCTCCCGTGACCTCAAACCCAACAGATTTCTCAAGTTTTCCGTCGACGATGGCACCGGCTGTGTTAGCTGTATTCTATGGCTCAATCAGCTGAGCTCGCCTTACTTTGCAAGCCGGCGCCCACCAGATGTTCGAATAATTGCTAATATGGCGACCCATTTCGCTGCCCAAATTAGGGTTGGGATTGTTGGTAGAGTCCGGGGGAAGGTCACCAGCTATAGGGGCGTGGTGCAGATCACGGTGTCAGATGTTGTGGTTGAGGATGACCCAAATGCTCAGATTCTGCATTGGTTGGATTGCATGAGGTTGGCTCTAAAGTGTTATGACCTCTTGCCTACACCCACA

Coding sequence (CDS)

CACCGCCACGTTAAGCTCCTGGGTTTTGACCTTCTTTCACTCACTCAAACTTCATCTTCTTCCTCCTCCGATGCCGTCTCCTTCTCTCGCAAAGGCCACGCCGTCTCCTGTGCAGAGATCGTCGGCGTCGTGGTCTCCCGTGACCTCAAACCCAACAGATTTCTCAAGTTTTCCGTCGACGATGGCACCGGCTGTGTTAGCTGTATTCTATGGCTCAATCAGCTGAGCTCGCCTTACTTTGCAAGCCGGCGCCCACCAGATGTTCGAATAATTGCTAATATGGCGACCCATTTCGCTGCCCAAATTAGGGTTGGGATTGTTGGTAGAGTCCGGGGGAAGGTCACCAGCTATAGGGGCGTGGTGCAGATCACGGTGTCAGATGTTGTGGTTGAGGATGACCCAAATGCTCAGATTCTGCATTGGTTGGATTGCATGAGGTTGGCTCTAAAGTGTTATGACCTCTTGCCTACACCCACA

Protein sequence

HRHVKLLGFDLLSLTQTSSSSSSDAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSVDDGTGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGVVQITVSDVVVEDDPNAQILHWLDCMRLALKCYDLLPTPT

Homology

[Close]

BLAST of MC06g1488 vs. ExPASy Swiss-Prot
Match: Q9LMK5 (CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.0e-39
Identity = 84/151 (55.63%), Postives = 108/151 (71.52%), Query Frame = 0


Query: 3   HVKLLGFDLLSLTQTSSSSSSDAVSFSRKGHA-VSCAEIVGVVVSRDLKPNRFLKFSVDD 62
           H KL+  D+  LTQ+ + S+    SFS  G A VS  EIVG +VSRDL P +FLKF VDD
Sbjct: 9   HAKLVARDIQRLTQSPTESN----SFSLLGGACVSRVEIVGTIVSRDLTP-KFLKFGVDD 68

Query: 63  GTGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGVV 122
           GTGCV+C++WLNQL+S YF+   P  + ++A+ A   AAQIR+G V RVRG+V SYRGV+
Sbjct: 69  GTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRGVM 128

Query: 123 QITVSDVVVEDDPNAQILHWLDCMRLALKCY 153
           QIT +  V E DPNA+ILHWL+C++L   CY
Sbjct: 129 QITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]

BLAST of MC06g1488 vs. NCBI nr
Match: XP_023553655.1 (CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553657.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277 bits (708), Expect = 5.04e-93
Identity = 136/158 (86.08%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   HRHVKLLGFDLLSLTQTSSSSSSDAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSVD 60
           H H+KLLGFDL SL Q+SSSSSSDAVSFSR+G+AVSC E+VGVVV RDLKPNRFL+FSVD
Sbjct: 11  HTHIKLLGFDLNSLAQSSSSSSSDAVSFSRRGYAVSCVEVVGVVVFRDLKPNRFLRFSVD 70

Query: 61  DGTGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGV 120
           DGTGCVSCILWLN L+SPYFASR  PDVRII NMATHFAAQIRVGIV RVRGKV+SYRGV
Sbjct: 71  DGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARVRGKVSSYRGV 130

Query: 121 VQITVSDVVVEDDPNAQILHWLDCMRLALKCYDLLPTP 158
           VQITVSDVVVE+DPNA+ILHWLDCMRLALKCYDL P P
Sbjct: 131 VQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 168

[Close]

BLAST of MC06g1488 vs. NCBI nr
Match: XP_022963452.1 (LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata])

HSP 1 Score: 276 bits (705), Expect = 5.65e-92
Identity = 135/158 (85.44%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   HRHVKLLGFDLLSLTQTSSSSSSDAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSVD 60
           H H+KLLGFDL SLTQ++SSSSSDAVSFSR+G+AVSC EIVGVVV RDLKPNRFL+FSVD
Sbjct: 51  HTHIKLLGFDLNSLTQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLKPNRFLRFSVD 110

Query: 61  DGTGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGV 120
           DGTGCVSCILWLN L+SPYFASR  PDVRII NMATHFAAQIRVGIV RVRG+V+SYRGV
Sbjct: 111 DGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARVRGRVSSYRGV 170

Query: 121 VQITVSDVVVEDDPNAQILHWLDCMRLALKCYDLLPTP 158
           VQ+TVSDVVVE+DPNA+ILHWLDCMRLALKCYDL P P
Sbjct: 171 VQMTVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 208

[Close]

BLAST of MC06g1488 vs. NCBI nr
Match: KAG7011223.1 (CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272 bits (696), Expect = 3.51e-91
Identity = 137/159 (86.16%), Postives = 146/159 (91.82%), Query Frame = 0


Query: 1   HRHVKLLGFDLLSLTQTSSSSSS-DAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSV 60
           H H+KLLGFDL SLTQ+SSSSSS DAVSFSR+G+AVSC EIVGVVV RDLKPNRFL+FSV
Sbjct: 11  HTHIKLLGFDLNSLTQSSSSSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLKPNRFLRFSV 70

Query: 61  DDGTGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRG 120
           DDGTGCVSCILWLN L+SPYFA R  PDVRII NMATHFAAQIRVGIV RVRGKV+SYRG
Sbjct: 71  DDGTGCVSCILWLNHLTSPYFALRHQPDVRIIGNMATHFAAQIRVGIVARVRGKVSSYRG 130

Query: 121 VVQITVSDVVVEDDPNAQILHWLDCMRLALKCYDLLPTP 158
           VVQITVSDVVVE+DPNA+ILHWLDCMRLALKCYDL P P
Sbjct: 131 VVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 169

[Close]

BLAST of MC06g1488 vs. NCBI nr
Match: KAG6571457.1 (CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272 bits (696), Expect = 6.72e-91
Identity = 137/159 (86.16%), Postives = 146/159 (91.82%), Query Frame = 0


Query: 1   HRHVKLLGFDLLSLTQTSSSSSS-DAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSV 60
           H H+KLLGFDL SLTQ+SSSSSS DAVSFSR+G+AVSC EIVGVVV RDLKPNRFL+FSV
Sbjct: 30  HTHIKLLGFDLNSLTQSSSSSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLKPNRFLRFSV 89

Query: 61  DDGTGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRG 120
           DDGTGCVSCILWLN L+SPYFA R  PDVRII NMATHFAAQIRVGIV RVRGKV+SYRG
Sbjct: 90  DDGTGCVSCILWLNHLTSPYFALRHQPDVRIIGNMATHFAAQIRVGIVARVRGKVSSYRG 149

Query: 121 VVQITVSDVVVEDDPNAQILHWLDCMRLALKCYDLLPTP 158
           VVQITVSDVVVE+DPNA+ILHWLDCMRLALKCYDL P P
Sbjct: 150 VVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 188

[Close]

BLAST of MC06g1488 vs. NCBI nr
Match: XP_022967373.1 (CST complex subunit STN1 [Cucurbita maxima] >XP_022967374.1 CST complex subunit STN1 [Cucurbita maxima] >XP_022967375.1 CST complex subunit STN1 [Cucurbita maxima])

HSP 1 Score: 258 bits (660), Expect = 1.41e-85
Identity = 129/145 (88.97%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   HRHVKLLGFDLLSLTQTSSSSSSDAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSVD 60
           H H+KLLGFDL SLTQ+SSSSSSDAVSFSR+G AVSCAEIVGVVVSRDLKPNRFL+FSVD
Sbjct: 29  HTHIKLLGFDLNSLTQSSSSSSSDAVSFSRRGFAVSCAEIVGVVVSRDLKPNRFLRFSVD 88

Query: 61  DGTGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGV 120
           DGTGCVSCILWLN L+SPYFASR  PDVRII NMATHFAAQIRVGIV RVRGKV+SYRGV
Sbjct: 89  DGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARVRGKVSSYRGV 148

Query: 121 VQITVSDVVVEDDPNAQILHWLDCM 145
           VQITVSDVVVE+DPNA+ILHWLDCM
Sbjct: 149 VQITVSDVVVENDPNAEILHWLDCM 173

[Close]

BLAST of MC06g1488 vs. ExPASy TrEMBL
Match: A0A6J1HFA9 (LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=LOC111463780 PE=4 SV=1)

HSP 1 Score: 276 bits (705), Expect = 2.74e-92
Identity = 135/158 (85.44%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   HRHVKLLGFDLLSLTQTSSSSSSDAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSVD 60
           H H+KLLGFDL SLTQ++SSSSSDAVSFSR+G+AVSC EIVGVVV RDLKPNRFL+FSVD
Sbjct: 51  HTHIKLLGFDLNSLTQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLKPNRFLRFSVD 110

Query: 61  DGTGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGV 120
           DGTGCVSCILWLN L+SPYFASR  PDVRII NMATHFAAQIRVGIV RVRG+V+SYRGV
Sbjct: 111 DGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARVRGRVSSYRGV 170

Query: 121 VQITVSDVVVEDDPNAQILHWLDCMRLALKCYDLLPTP 158
           VQ+TVSDVVVE+DPNA+ILHWLDCMRLALKCYDL P P
Sbjct: 171 VQMTVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 208

[Close]

BLAST of MC06g1488 vs. ExPASy TrEMBL
Match: A0A6J1HUX0 (CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 6.83e-86
Identity = 129/145 (88.97%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   HRHVKLLGFDLLSLTQTSSSSSSDAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSVD 60
           H H+KLLGFDL SLTQ+SSSSSSDAVSFSR+G AVSCAEIVGVVVSRDLKPNRFL+FSVD
Sbjct: 29  HTHIKLLGFDLNSLTQSSSSSSSDAVSFSRRGFAVSCAEIVGVVVSRDLKPNRFLRFSVD 88

Query: 61  DGTGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGV 120
           DGTGCVSCILWLN L+SPYFASR  PDVRII NMATHFAAQIRVGIV RVRGKV+SYRGV
Sbjct: 89  DGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARVRGKVSSYRGV 148

Query: 121 VQITVSDVVVEDDPNAQILHWLDCM 145
           VQITVSDVVVE+DPNA+ILHWLDCM
Sbjct: 149 VQITVSDVVVENDPNAEILHWLDCM 173

[Close]

BLAST of MC06g1488 vs. ExPASy TrEMBL
Match: A0A5D3E3H2 (CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001150 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 3.28e-84
Identity = 129/157 (82.17%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 3   HVKLLGFDLLSLTQTSSSSSSDAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSVDDG 62
           HVKLLGFDL SL Q SSS   D+VSFSRKG+AVSC EIVGVVV RDLKPNRFLKFSVDDG
Sbjct: 15  HVKLLGFDLNSLNQNSSS---DSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDG 74

Query: 63  TGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGVVQ 122
           T CV CILWLN L+S YFASR  PDVRI+A+MATHFAAQIRVGIV RVRGK++SYRG+VQ
Sbjct: 75  TACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQ 134

Query: 123 ITVSDVVVEDDPNAQILHWLDCMRLALKCYDLLPTPT 159
           ITVSDVVVEDDPNA+ILHWLD MRLA+KCYDL P PT
Sbjct: 135 ITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 168

[Close]

BLAST of MC06g1488 vs. ExPASy TrEMBL
Match: A0A1S3BLT5 (CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 1.76e-83
Identity = 129/157 (82.17%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 3   HVKLLGFDLLSLTQTSSSSSSDAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSVDDG 62
           HVKLLGFDL SL Q SSS   D+VSFSRKG+AVSC EIVGVVV RDLKPNRFLKFSVDDG
Sbjct: 65  HVKLLGFDLNSLNQNSSS---DSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDG 124

Query: 63  TGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGVVQ 122
           T CV CILWLN L+S YFASR  PDVRI+A+MATHFAAQIRVGIV RVRGK++SYRG+VQ
Sbjct: 125 TACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQ 184

Query: 123 ITVSDVVVEDDPNAQILHWLDCMRLALKCYDLLPTPT 159
           ITVSDVVVEDDPNA+ILHWLD MRLA+KCYDL P PT
Sbjct: 185 ITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 218

[Close]

BLAST of MC06g1488 vs. ExPASy TrEMBL
Match: A0A0A0LNV0 (OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1)

HSP 1 Score: 251 bits (641), Expect = 3.82e-83
Identity = 128/157 (81.53%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 3   HVKLLGFDLLSLTQTSSSSSSDAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSVDDG 62
           HVKLL FDL SL QTSSS   D+VSFSRKG+AVSC EIVGVVV RDLKPNRFLKFSVDDG
Sbjct: 15  HVKLLAFDLNSLNQTSSS---DSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDG 74

Query: 63  TGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGVVQ 122
           T CV CILWLN L+S YFASR   DVRI+ +MATHFAAQIRVGIV RVRGK++SYRG+VQ
Sbjct: 75  TACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQ 134

Query: 123 ITVSDVVVEDDPNAQILHWLDCMRLALKCYDLLPTPT 159
           ITVSDVVVEDDPNA+ILHWLD MRLA+KCYDL PTPT
Sbjct: 135 ITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]

BLAST of MC06g1488 vs. TAIR 10
Match: AT1G07130.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 162.2 bits (409), Expect = 3.5e-40
Identity = 84/151 (55.63%), Postives = 108/151 (71.52%), Query Frame = 0


Query: 3   HVKLLGFDLLSLTQTSSSSSSDAVSFSRKGHA-VSCAEIVGVVVSRDLKPNRFLKFSVDD 62
           H KL+  D+  LTQ+ + S+    SFS  G A VS  EIVG +VSRDL P +FLKF VDD
Sbjct: 9   HAKLVARDIQRLTQSPTESN----SFSLLGGACVSRVEIVGTIVSRDLTP-KFLKFGVDD 68

Query: 63  GTGCVSCILWLNQLSSPYFASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGVV 122
           GTGCV+C++WLNQL+S YF+   P  + ++A+ A   AAQIR+G V RVRG+V SYRGV+
Sbjct: 69  GTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRGVM 128

Query: 123 QITVSDVVVEDDPNAQILHWLDCMRLALKCY 153
           QIT +  V E DPNA+ILHWL+C++L   CY
Sbjct: 129 QITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]

BLAST of MC06g1488 vs. TAIR 10
Match: AT2G24490.1 (replicon protein A2 )

HSP 1 Score: 42.7 bits (99), Expect = 3.1e-04
Identity = 29/125 (23.20%), Postives = 56/125 (44.80%), Query Frame = 0


Query: 21  SSSDAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSVDDGTGCVSCILWLNQLSSPYF 80
           SS +       G +++   +VG+V  +D      ++F++DDGTG + C  W+++     F
Sbjct: 56  SSGEKSGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSET----F 115

Query: 81  ASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGVVQITVSDVVVEDDPNAQILH 140
            +R                  +R G   R+ G + +++G  Q+ V  V    D N    H
Sbjct: 116 DARE--------------MESVRDGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFH 162

Query: 141 WLDCM 146
           +++C+
Sbjct: 176 YIECI 162

[Close]

BLAST of MC06g1488 vs. TAIR 10
Match: AT2G24490.2 (replicon protein A2 )

HSP 1 Score: 42.7 bits (99), Expect = 3.1e-04
Identity = 29/125 (23.20%), Postives = 56/125 (44.80%), Query Frame = 0


Query: 21  SSSDAVSFSRKGHAVSCAEIVGVVVSRDLKPNRFLKFSVDDGTGCVSCILWLNQLSSPYF 80
           SS +       G +++   +VG+V  +D      ++F++DDGTG + C  W+++     F
Sbjct: 56  SSGEKSGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSET----F 115

Query: 81  ASRRPPDVRIIANMATHFAAQIRVGIVGRVRGKVTSYRGVVQITVSDVVVEDDPNAQILH 140
            +R                  +R G   R+ G + +++G  Q+ V  V    D N    H
Sbjct: 116 DARE--------------MESVRDGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFH 162

Query: 141 WLDCM 146
           +++C+
Sbjct: 176 YIECI 162

The following BLAST results are available for this feature:

BLAST of MC06g1488 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK5	5.0e-39	55.63	CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1	[more]

BLAST of MC06g1488 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553655.1	5.04e-93	86.08	CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST comple...	[more]
XP_022963452.1	5.65e-92	85.44	LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]	[more]
KAG7011223.1	3.51e-91	86.16	CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6571457.1	6.72e-91	86.16	CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022967373.1	1.41e-85	88.97	CST complex subunit STN1 [Cucurbita maxima] >XP_022967374.1 CST complex subunit ...	[more]

BLAST of MC06g1488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFA9	2.74e-92	85.44	LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HUX0	6.83e-86	88.97	CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1	[more]
A0A5D3E3H2	3.28e-84	82.17	CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BLT5	1.76e-83	82.17	CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1	[more]
A0A0A0LNV0	3.82e-83	81.53	OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=...	[more]

BLAST of MC06g1488 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07130.1	3.5e-40	55.63	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G24490.1	3.1e-04	23.20	replicon protein A2	[more]
AT2G24490.2	3.1e-04	23.20	replicon protein A2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 40..129 e-value: 4.4E-9 score: 36.2
None	No IPR available	GENE3D	2.40.50.140		coord: 1..155 e-value: 1.1E-26 score: 95.2
None	No IPR available	PANTHER	PTHR13989:SF33	CST COMPLEX SUBUNIT STN1	coord: 2..154
IPR040260	Replication factor A protein-like	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 2..154
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 28..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1488.1	MC06g1488.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003676	nucleic acid binding