MC06g1371 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1371
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC06: 20892468 .. 20892662 (+)
RNA-Seq Expression	MC06g1371
Synteny	MC06g1371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAGCCTCCTCGGGATCTTCGTGGTCGTCGGAGGTGGAGAGATTGATGCAGGAGCAGCGCTCGAGGGAGGCGAAGAAGGCGGAGGCGACGCTGGTTCCGACCCATGTGGCCATGCCGTTGAGCTTCTCGTACGACAAGCAGGTGCTCTGATTCTCCATGGCTATGGCGGATTCGCTCTTCCCGTTGCTTGCCTT

mRNA sequence

GTGAGCCTCCTCGGGATCTTCGTGGTCGTCGGAGGTGGAGAGATTGATGCAGGAGCAGCGCTCGAGGGAGGCGAAGAAGGCGGAGGCGACGCTGGTTCCGACCCATGTGGCCATGCCGTTGAGCTTCTCGTACGACAAGCAGGTGCTCTGATTCTCCATGGCTATGGCGGATTCGCTCTTCCCGTTGCTTGCCTT

Coding sequence (CDS)

GTGAGCCTCCTCGGGATCTTCGTGGTCGTCGGAGGTGGAGAGATTGATGCAGGAGCAGCGCTCGAGGGAGGCGAAGAAGGCGGAGGCGACGCTGGTTCCGACCCATGTGGCCATGCCGTTGAGCTTCTCGTACGACAAGCAGGTGCTCTGATTCTCCATGGCTATGGCGGATTCGCTCTTCCCGTTGCTTGCCTT

Protein sequence

VSLLGIFVVVGGGEIDAGAALEGGEEGGGDAGSDPCGHAVELLVRQAGALILHGYGGFALPVACL

Homology

[Close]

BLAST of MC06g1371 vs. NCBI nr
Match: TQE04631.1 (hypothetical protein C1H46_009714 [Malus baccata])

HSP 1 Score: 66.6 bits (161), Expect = 9.44e-12
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1   VSLLGI-FVVVGGGEIDAGAALEGGEEGGGDAGSDPCGHAVELLVRQAGALIL 52
           V LLG+ FVVVGGGE+DAGAAL+GGEEGGG  G  P G AV+LLVRQA AL L
Sbjct: 54  VGLLGVGFVVVGGGEVDAGAALKGGEEGGGHVGPKPTGDAVDLLVRQARALAL 106

[Close]

BLAST of MC06g1371 vs. NCBI nr
Match: TQD94557.1 (hypothetical protein C1H46_019802 [Malus baccata])

HSP 1 Score: 64.7 bits (156), Expect = 3.91e-10
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1   VSLLGI-FVVVGGGEIDAGAALEGGEEGGGDAGSDPCGHAVELLVRQAGALIL 52
           V LLG+ F+VVGGGE+DAGAALEG EEGGG+ G  P G AV+LLVRQA AL L
Sbjct: 55  VGLLGVGFLVVGGGEVDAGAALEGVEEGGGNVGPKPAGDAVDLLVRQARALAL 107

[Close]

BLAST of MC06g1371 vs. NCBI nr
Match: KAF5731309.1 (hypothetical protein HS088_TW19G00917 [Tripterygium wilfordii])

HSP 1 Score: 53.5 bits (127), Expect = 4.79e-07
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 2  SLLGIFVVVGGGEIDAGAALEGGEEGGGDAGSDPCGHAVELLVRQAGALILH 53
          +++GIF VVGGGE+DAG   EG EEGG  AG  P  H+V+ L+RQ    I+H
Sbjct: 45 AVVGIFGVVGGGEVDAGTPFEGREEGGSHAGPHPRRHSVQFLIRQTRGQIVH 96

[Close]

BLAST of MC06g1371 vs. NCBI nr
Match: KAF7826206.1 (hypothetical protein G2W53_017370 [Senna tora])

HSP 1 Score: 53.1 bits (126), Expect = 5.84e-07
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 2   SLLGI--FVVVGGGEIDAGAALEGGEEGGGDAGSDPCGHAVELLVRQAGALILHGYGGFA 61
           +++GI  FVVVGG EIDAGA+L+GGEE G D G++P   A+E +    G  +LH     A
Sbjct: 41  TIIGIVFFVVVGGAEIDAGASLQGGEENGCDVGAEPVSEAIEFIAGDGGGGVLHFGIAIA 100

Query: 62  LPVA 63
           L +A
Sbjct: 101 LALA 104

[Close]

BLAST of MC06g1371 vs. NCBI nr
Match: KAF3455453.1 (hypothetical protein FNV43_RR00080 [Rhamnella rubrinervis])

HSP 1 Score: 49.7 bits (117), Expect = 9.62e-06
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 5  GIFVVV---GGGEIDAGAALEGGEEGGGDAGSDPCGHAVELLVRQAGALIL 52
          G+ VVV    GGE+D G  LEGGEEGGG+ G DP GH ++LL  + G +I+
Sbjct: 28 GVVVVVFEIDGGEMDKGVVLEGGEEGGGNNGDDPVGHTIQLLAGKKGCVIV 78

[Close]

BLAST of MC06g1371 vs. ExPASy TrEMBL
Match: A0A540N0Q2 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_009714 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.57e-12
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1   VSLLGI-FVVVGGGEIDAGAALEGGEEGGGDAGSDPCGHAVELLVRQAGALIL 52
           V LLG+ FVVVGGGE+DAGAAL+GGEEGGG  G  P G AV+LLVRQA AL L
Sbjct: 54  VGLLGVGFVVVGGGEVDAGAALKGGEEGGGHVGPKPTGDAVDLLVRQARALAL 106

[Close]

BLAST of MC06g1371 vs. ExPASy TrEMBL
Match: A0A540M725 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_019802 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.89e-10
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1   VSLLGI-FVVVGGGEIDAGAALEGGEEGGGDAGSDPCGHAVELLVRQAGALIL 52
           V LLG+ F+VVGGGE+DAGAALEG EEGGG+ G  P G AV+LLVRQA AL L
Sbjct: 55  VGLLGVGFLVVGGGEVDAGAALEGVEEGGGNVGPKPAGDAVDLLVRQARALAL 107

[Close]

BLAST of MC06g1371 vs. ExPASy TrEMBL
Match: A0A7J7CB18 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW19G00917 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.32e-07
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 2  SLLGIFVVVGGGEIDAGAALEGGEEGGGDAGSDPCGHAVELLVRQAGALILH 53
          +++GIF VVGGGE+DAG   EG EEGG  AG  P  H+V+ L+RQ    I+H
Sbjct: 45 AVVGIFGVVGGGEVDAGTPFEGREEGGSHAGPHPRRHSVQFLIRQTRGQIVH 96

[Close]

BLAST of MC06g1371 vs. ExPASy TrEMBL
Match: A0A0D3A5T6 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.24e-04
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 6  IFVVVGGGEIDAGAALEGGEEGGGDAGSDPCGHAVELL 43
          +FVV+G GEIDAGAA+EGGEE G D G++P    ++LL
Sbjct: 21 VFVVMGSGEIDAGAAVEGGEESGDDRGAEPARCLIDLL 58

[Close]

BLAST of MC06g1371 vs. ExPASy TrEMBL
Match: D7M8Y5 (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_492459 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.38e-04
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 6  IFVVVGGGEIDAGAALEGGEEGGGDAGSDPCGHAVELL 43
          +F+++ GGEIDAGA  EGGEE G D G+DP    V+LL
Sbjct: 20 VFIIMRGGEIDAGATFEGGEESGDDGGADPARGVVDLL 57

The following BLAST results are available for this feature:

BLAST of MC06g1371 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g1371 vs. NCBI nr


Match Name	E-value	Identity	Description
TQE04631.1	9.44e-12	73.58	hypothetical protein C1H46_009714 [Malus baccata]	[more]
TQD94557.1	3.91e-10	71.70	hypothetical protein C1H46_019802 [Malus baccata]	[more]
KAF5731309.1	4.79e-07	53.85	hypothetical protein HS088_TW19G00917 [Tripterygium wilfordii]	[more]
KAF7826206.1	5.84e-07	48.44	hypothetical protein G2W53_017370 [Senna tora]	[more]
KAF3455453.1	9.62e-06	52.94	hypothetical protein FNV43_RR00080 [Rhamnella rubrinervis]	[more]

BLAST of MC06g1371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A540N0Q2	4.57e-12	73.58	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_009714 PE=4 SV=1	[more]
A0A540M725	1.89e-10	71.70	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_019802 PE=4 SV=1	[more]
A0A7J7CB18	2.32e-07	53.85	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW19G00917 ...	[more]
A0A0D3A5T6	3.24e-04	60.53	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1	[more]
D7M8Y5	6.38e-04	57.89	Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA...	[more]

BLAST of MC06g1371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1371.1	MC06g1371.1	mRNA