MC06g1082 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1082
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ORF43m
Location	MC06: 10996394 .. 10996639 (-)
RNA-Seq Expression	MC06g1082
Synteny	MC06g1082

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGATGCCTTCGGTATCCAGGGGTCGCGGACCGACCA

mRNA sequence

ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGATGCCTTCGGTATCCAGGGGTCGCGGACCGACCA

Coding sequence (CDS)

ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGATGCCTTCGGTATCCAGGGGTCGCGGACCGACCA

Protein sequence

MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGCLRYPGVADRP

Homology

[Close]

BLAST of MC06g1082 vs. NCBI nr
Match: QHE65624.1 (ORF43m [Nitraria roborowskii] >QHE65704.1 ORF43m [Nitraria sibirica] >QHE65784.1 ORF43m [Nitraria tangutorum] >QHE65637.1 ORF43m [Nitraria roborowskii] >QHE65717.1 ORF43m [Nitraria sibirica])

HSP 1 Score: 172 bits (436), Expect = 3.78e-54
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGCLRYPGVADRP 82
          HPVGTTRSPQG LRYPGVADRP
Sbjct: 61 HPVGTTRSPQGRLRYPGVADRP 82

[Close]

BLAST of MC06g1082 vs. NCBI nr
Match: ERM97427.1 (hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda])

HSP 1 Score: 170 bits (431), Expect = 2.19e-53
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGCLRYPGVADRP 82
          HPVGTTRSPQG LR+PGVADRP
Sbjct: 61 HPVGTTRSPQGRLRHPGVADRP 82

[Close]

BLAST of MC06g1082 vs. NCBI nr
Match: KAB8477470.1 (hypothetical protein FH972_025336 [Carpinus fangiana])

HSP 1 Score: 165 bits (417), Expect = 3.01e-51
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGS R PSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSPRDPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGCLRYPGVADRP 82
          HPVGTTRSPQG LR+PGVADRP
Sbjct: 61 HPVGTTRSPQGRLRHPGVADRP 82

[Close]

BLAST of MC06g1082 vs. NCBI nr
Match: YP_009758287.1 (hypothetical protein [Rubus amabilis] >YP_009758301.1 ORF43m [Rubus amabilis] >QIN90067.1 hypothetical protein [Rubus amabilis] >QIN90081.1 ORF43m [Rubus amabilis])

HSP 1 Score: 164 bits (416), Expect = 4.27e-51
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGS RVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKE KSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEKKSMDRPHRL 60

Query: 61 HPVGTTRSPQGCLRYPGVADRP 82
          HPVGTTRSPQG LR+PGVADRP
Sbjct: 61 HPVGTTRSPQGRLRHPGVADRP 82

[Close]

BLAST of MC06g1082 vs. NCBI nr
Match: PQP98136.1 (hypothetical protein Pyn_20559 [Prunus yedoensis var. nudiflora] >QCE13753.1 hypothetical protein DEO72_LG11g751 [Vigna unguiculata])

HSP 1 Score: 164 bits (416), Expect = 4.27e-51
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGS RVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKE KSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEEKSMDRPHRL 60

Query: 61 HPVGTTRSPQGCLRYPGVADRP 82
          HPVGTTRSPQG LR+PGVADRP
Sbjct: 61 HPVGTTRSPQGRLRHPGVADRP 82

[Close]

BLAST of MC06g1082 vs. ExPASy TrEMBL
Match: A0A6B9QFK3 (ORF43m OS=Nitraria tangutorum OX=357929 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 1.83e-54
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGCLRYPGVADRP 82
          HPVGTTRSPQG LRYPGVADRP
Sbjct: 61 HPVGTTRSPQGRLRYPGVADRP 82

[Close]

BLAST of MC06g1082 vs. ExPASy TrEMBL
Match: A0A6B9QF48 (ORF43m OS=Nitraria roborowskii OX=357932 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 1.83e-54
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGCLRYPGVADRP 82
          HPVGTTRSPQG LRYPGVADRP
Sbjct: 61 HPVGTTRSPQGRLRYPGVADRP 82

[Close]

BLAST of MC06g1082 vs. ExPASy TrEMBL
Match: A0A6B9QGL2 (ORF43m OS=Nitraria sibirica OX=357931 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 1.83e-54
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGCLRYPGVADRP 82
          HPVGTTRSPQG LRYPGVADRP
Sbjct: 61 HPVGTTRSPQGRLRYPGVADRP 82

[Close]

BLAST of MC06g1082 vs. ExPASy TrEMBL
Match: U5CKY2 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02909p00006680 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 1.06e-53
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGCLRYPGVADRP 82
          HPVGTTRSPQG LR+PGVADRP
Sbjct: 61 HPVGTTRSPQGRLRHPGVADRP 82

[Close]

BLAST of MC06g1082 vs. ExPASy TrEMBL
Match: A0A5N6L147 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025336 PE=4 SV=1)

HSP 1 Score: 165 bits (417), Expect = 1.46e-51
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGS R PSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSPRDPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGCLRYPGVADRP 82
          HPVGTTRSPQG LR+PGVADRP
Sbjct: 61 HPVGTTRSPQGRLRHPGVADRP 82

The following BLAST results are available for this feature:

BLAST of MC06g1082 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g1082 vs. NCBI nr


Match Name	E-value	Identity	Description
QHE65624.1	3.78e-54	98.78	ORF43m [Nitraria roborowskii] >QHE65704.1 ORF43m [Nitraria sibirica] >QHE65784.1...	[more]
ERM97427.1	2.19e-53	97.56	hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda]	[more]
KAB8477470.1	3.01e-51	95.12	hypothetical protein FH972_025336 [Carpinus fangiana]	[more]
YP_009758287.1	4.27e-51	95.12	hypothetical protein [Rubus amabilis] >YP_009758301.1 ORF43m [Rubus amabilis] >Q...	[more]
PQP98136.1	4.27e-51	95.12	hypothetical protein Pyn_20559 [Prunus yedoensis var. nudiflora] >QCE13753.1 hyp...	[more]

BLAST of MC06g1082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6B9QFK3	1.83e-54	98.78	ORF43m OS=Nitraria tangutorum OX=357929 GN=trnA-UGC PE=4 SV=1	[more]
A0A6B9QF48	1.83e-54	98.78	ORF43m OS=Nitraria roborowskii OX=357932 GN=trnA-UGC PE=4 SV=1	[more]
A0A6B9QGL2	1.83e-54	98.78	ORF43m OS=Nitraria sibirica OX=357931 GN=trnA-UGC PE=4 SV=1	[more]
U5CKY2	1.06e-53	97.56	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02909p00006680...	[more]
A0A5N6L147	1.46e-51	95.12	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025336 PE=4 SV=1	[more]

BLAST of MC06g1082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1082.1	MC06g1082.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding