MC06g0973 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g0973
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionF-box protein At3g07870-like
LocationMC06: 8687618 .. 8687761 (-)
RNA-Seq ExpressionMC06g0973
SyntenyMC06g0973
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCATATTAAATCCCATGACAAATGAGTACTTCAAACCGCCCATCTCGGATGCAGATAAGGATATATGGCAGTATTATTTTTATGGATTTGGGTTTAGTCCTAAGACAAAGCAGTACAAATTAGCAAGATTCTCCTTTGTTCGG

mRNA sequence

TTCATATTAAATCCCATGACAAATGAGTACTTCAAACCGCCCATCTCGGATGCAGATAAGGATATATGGCAGTATTATTTTTATGGATTTGGGTTTAGTCCTAAGACAAAGCAGTACAAATTAGCAAGATTCTCCTTTGTTCGG

Coding sequence (CDS)

TTCATATTAAATCCCATGACAAATGAGTACTTCAAACCGCCCATCTCGGATGCAGATAAGGATATATGGCAGTATTATTTTTATGGATTTGGGTTTAGTCCTAAGACAAAGCAGTACAAATTAGCAAGATTCTCCTTTGTTCGG

Protein sequence

FILNPMTNEYFKPPISDADKDIWQYYFYGFGFSPKTKQYKLARFSFVR
Homology
BLAST of MC06g0973 vs. NCBI nr
Match: XP_022143297.1 (F-box/kelch-repeat protein At3g06240-like [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 3.47e-14
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 2   ILNPMTNEYFKPPISDADKDIWQYYFYGFGFSPKTKQYKLARFSF 46
           ILNPMTNEYFKPPIS+A KD W YY Y FGFSPKTKQYKL RF +
Sbjct: 138 ILNPMTNEYFKPPISNASKDRW-YYCYRFGFSPKTKQYKLVRFFY 181

BLAST of MC06g0973 vs. NCBI nr
Match: XP_022154078.1 (F-box/LRR-repeat protein At2g43260-like [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 7.03e-13
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 1   FILNPMTNEYFKPPISDADKDIWQYYFYGFGFSPKTKQYKLARFSFV 47
           FILNPMTNEYFKPP S+AD  +W YY +GFGFS KTKQYKL R SF 
Sbjct: 123 FILNPMTNEYFKPPFSNAD--VW-YYCFGFGFSLKTKQYKLTRLSFA 166

BLAST of MC06g0973 vs. NCBI nr
Match: XP_038880514.1 (putative F-box protein At1g46984 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 4.33e-09
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 2   ILNPMTNEYFKPPISDADKDIWQYYFYGFGFSPKTKQYKLARFSFV 47
           +LNPMTNEYFK P   +  D  + YFYG GFSP+TKQYKLAR  +V
Sbjct: 135 VLNPMTNEYFKLPTFRSKGDSVKDYFYGLGFSPRTKQYKLARTHYV 180

BLAST of MC06g0973 vs. NCBI nr
Match: XP_022961417.1 (F-box protein At3g07870-like [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 1.82e-07
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 2   ILNPMTNEYFKPPISDADKDIWQYYFYGFGFSPKTKQYKLARFSFVR 48
           ILNP+TNEYF+ P  D  K  W   +YGFGF PKTKQYK+ R S VR
Sbjct: 139 ILNPITNEYFELP-KDKFKGNWFTCYYGFGFCPKTKQYKVVRSSTVR 184

BLAST of MC06g0973 vs. NCBI nr
Match: XP_022147764.1 (uncharacterized protein LOC111016621 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 1.85e-07
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 2   ILNPMTNEYFKPPISDADKDIWQYYFYGFGFSPKTKQYKLAR 43
           ILNP+TNEY K P  D D+  ++Y  YGFGFSP TK+YK+ R
Sbjct: 127 ILNPVTNEYIKLPTGDLDRYRYRYCHYGFGFSPVTKEYKIVR 168

BLAST of MC06g0973 vs. ExPASy TrEMBL
Match: A0A6J1CQE2 (F-box/kelch-repeat protein At3g06240-like OS=Momordica charantia OX=3673 GN=LOC111013202 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.68e-14
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 2   ILNPMTNEYFKPPISDADKDIWQYYFYGFGFSPKTKQYKLARFSF 46
           ILNPMTNEYFKPPIS+A KD W YY Y FGFSPKTKQYKL RF +
Sbjct: 138 ILNPMTNEYFKPPISNASKDRW-YYCYRFGFSPKTKQYKLVRFFY 181

BLAST of MC06g0973 vs. ExPASy TrEMBL
Match: A0A6J1DJA3 (F-box/LRR-repeat protein At2g43260-like OS=Momordica charantia OX=3673 GN=LOC111021424 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.40e-13
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 1   FILNPMTNEYFKPPISDADKDIWQYYFYGFGFSPKTKQYKLARFSFV 47
           FILNPMTNEYFKPP S+AD  +W YY +GFGFS KTKQYKL R SF 
Sbjct: 123 FILNPMTNEYFKPPFSNAD--VW-YYCFGFGFSLKTKQYKLTRLSFA 166

BLAST of MC06g0973 vs. ExPASy TrEMBL
Match: A0A6J1HA55 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111461998 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.80e-08
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 2   ILNPMTNEYFKPPISDADKDIWQYYFYGFGFSPKTKQYKLARFSFVR 48
           ILNP+TNEYF+ P  D  K  W   +YGFGF PKTKQYK+ R S VR
Sbjct: 139 ILNPITNEYFELP-KDKFKGNWFTCYYGFGFCPKTKQYKVVRSSTVR 184

BLAST of MC06g0973 vs. ExPASy TrEMBL
Match: A0A6J1D1Z0 (uncharacterized protein LOC111016621 OS=Momordica charantia OX=3673 GN=LOC111016621 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.95e-08
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 2   ILNPMTNEYFKPPISDADKDIWQYYFYGFGFSPKTKQYKLAR 43
           ILNP+TNEY K P  D D+  ++Y  YGFGFSP TK+YK+ R
Sbjct: 127 ILNPVTNEYIKLPTGDLDRYRYRYCHYGFGFSPVTKEYKIVR 168

BLAST of MC06g0973 vs. ExPASy TrEMBL
Match: A0A6J1HDZ2 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462000 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.06e-08
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 2   ILNPMTNEYFKPPISDADKDIWQYYFYGFGFSPKTKQYKLARFSFVR 48
           ILNP+TNEYF+ P  D  K  W   +YGFGF PKTKQYK+ R S VR
Sbjct: 139 ILNPITNEYFELP-KDKFKGNWFTCYYGFGFCPKTKQYKVVRSSTVR 184

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022143297.13.47e-1480.00F-box/kelch-repeat protein At3g06240-like [Momordica charantia][more]
XP_022154078.17.03e-1374.47F-box/LRR-repeat protein At2g43260-like [Momordica charantia][more]
XP_038880514.14.33e-0963.04putative F-box protein At1g46984 [Benincasa hispida][more]
XP_022961417.11.82e-0761.70F-box protein At3g07870-like [Cucurbita moschata][more]
XP_022147764.11.85e-0759.52uncharacterized protein LOC111016621 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1CQE21.68e-1480.00F-box/kelch-repeat protein At3g06240-like OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1DJA33.40e-1374.47F-box/LRR-repeat protein At2g43260-like OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1HA558.80e-0861.70F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111461998 PE=4 ... [more]
A0A6J1D1Z08.95e-0859.52uncharacterized protein LOC111016621 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A6J1HDZ29.06e-0861.70F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462000 PE=4 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g0973.1MC06g0973.1mRNA