MC06g0567 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0567
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RING-type domain-containing protein
Location	MC06: 4603048 .. 4604540 (+)
RNA-Seq Expression	MC06g0567
Synteny	MC06g0567

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGTTGCAGGTGTGGTGCCTTTTTCCAATCAAATGGATGTGCTGTCGGAAGAGGTCTGTACTCTTTTGTTTGCTTCAGAAATTTTACCCATCCTAAAATTGGGAAACTATTTCTACTCTACTTTGTTATTTAAACTTGTATGCTTCCTTGGCCTTGGTTCCACCTTCAGTGAGTAGACAAAAGAATAGTTCTATCCTTTCCCTTTCTCGAGGAACATTTTTGTTAAGTTCTCTTTTTAGTGGATCACAATCTATAAAAGCTAAGCTGCATTGAACCAGCAGGATCAGAGTCTTGCTCGTCCAGTATTCATGAAGCGTTCACGTCATCAGTATAGTCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATGCATCCACCTCTCGTGAAAATCGAGTCAGAACTGTACTTGAAGAGCGACCCGCCTTTAAATTTGCTGCTCATTGCAACTCAGAGTTCCCAAACCACATAGGTACCCTTTTTGAAGTTCCTAAACACGGTTGTACGCTTTTTCTCAGAGGGAATGGGAGTCTATTTGTTGCAATGACATGTTCACTTGTATGATCTTATATGGTATAAGGTCTAGAAAATTTGTACTCCACATATTATATGGCCATATAATCAGATGAAAAGACCCAAAAACATAAACTATGCAAGTATGAGGTGATTTGTATACCACATCTCTGATGGAATAAATAAGCATAAGTAAAACTCCAACATTTCTTCTGGTTGTGCCTTTAGGTTGTTCTCTTTTGGCCACTTTGGCTTTTTGAATATATAGTTTCCGTTTCTTATCAGAGAAAAAAAAAACATTTCTTCTGGTTGGATGACTATTGCACCGTTTCTTTGAATTAGATTTCATATTCTTTATGACATCAATATATTCAGCATCGGTCGCCTATTTTTCTATCTCATTTATCTGCAGTAAGCAGTTCTGGTCATATTCTGTCATTGAAAGAACCATAAATTGTATGGCAGGAAACACTTATTTACGGAGGGAAAATTTCCTAATTATGTATCATATACCTCGAATCAAGTTAGAATCTCCATCTAGATAAATTGTAATGATCTTCCCCTCATCCCACACCATTTGAAGCTCTAGCTTTTGTGGGGGAAGATAATTTGCTTCCTTCATTGATGATGTTGTTATTCGTTCTGTATTAATTCAACTTTTTGCATTGATTTTAGAGAGCATTGAGAATACCTTTTGGGGGCCAGAGAGGATAAGGTACAGTTCCTTAGGGAAGGATGCAATTTCATCTCATGGAGTGAGAATGCTGTGTGGAATTTGCCAAAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGCAACACGCTTTCTTCCAGTGAACTTCCTGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGATCAGGTCAAAGGTCGAAGACAGAAGCGATCCACCTTGTCCCTTGTGCACGGAACCGTCCACCAAAATCGACGACTCAAAAGGA

mRNA sequence

TATGTTGCAGGTGTGGTGCCTTTTTCCAATCAAATGGATGTGCTGTCGGAAGAGGATCAGAGTCTTGCTCGTCCAGTATTCATGAAGCGTTCACGTCATCAGTATAGTCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATGCATCCACCTCTCGTGAAAATCGAGTCAGAACTGTACTTGAAGAGCGACCCGCCTTTAAATTTGCTGCTCATTGCAACTCAGAGTTCCCAAACCACATAGAGAGCATTGAGAATACCTTTTGGGGGCCAGAGAGGATAAGGTACAGTTCCTTAGGGAAGGATGCAATTTCATCTCATGGAGTGAGAATGCTGTGTGGAATTTGCCAAAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGCAACACGCTTTCTTCCAGTGAACTTCCTGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGATCAGGTCAAAGGTCGAAGACAGAAGCGATCCACCTTGTCCCTTGTGCACGGAACCGTCCACCAAAATCGACGACTCAAAAGGA

Coding sequence (CDS)

TATGTTGCAGGTGTGGTGCCTTTTTCCAATCAAATGGATGTGCTGTCGGAAGAGGATCAGAGTCTTGCTCGTCCAGTATTCATGAAGCGTTCACGTCATCAGTATAGTCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATGCATCCACCTCTCGTGAAAATCGAGTCAGAACTGTACTTGAAGAGCGACCCGCCTTTAAATTTGCTGCTCATTGCAACTCAGAGTTCCCAAACCACATAGAGAGCATTGAGAATACCTTTTGGGGGCCAGAGAGGATAAGGTACAGTTCCTTAGGGAAGGATGCAATTTCATCTCATGGAGTGAGAATGCTGTGTGGAATTTGCCAAAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGCAACACGCTTTCTTCCAGTGAACTTCCTGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGATCAGGTCAAAGGTCGAAGACAGAAGCGATCCACCTTGTCCCTTGTGCACGGAACCGTCCACCAAAATCGACGACTCAAAAGGA

Protein sequence

YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKG

Homology

[Close]

BLAST of MC06g0567 vs. NCBI nr
Match: XP_022134599.1 (uncharacterized protein LOC111006826 [Momordica charantia])

HSP 1 Score: 370 bits (949), Expect = 8.28e-129
Identity = 180/183 (98.36%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 60
           +++GVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 19  HLSGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 78

Query: 61  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 120
           VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL
Sbjct: 79  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 138

Query: 121 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 180
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD
Sbjct: 139 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 198

Query: 181 SKG 183
           SKG
Sbjct: 199 SKG 201

[Close]

BLAST of MC06g0567 vs. NCBI nr
Match: XP_038878632.1 (uncharacterized protein LOC120070818 isoform X2 [Benincasa hispida])

HSP 1 Score: 331 bits (849), Expect = 1.45e-113
Identity = 158/183 (86.34%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 1   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 60
           +++G+VPFSNQMDV SEED+S ARPVFMKRSRHQYSHQYCRRGSTS ANAS SRENRV+T
Sbjct: 18  HLSGMVPFSNQMDVRSEEDRSPARPVFMKRSRHQYSHQYCRRGSTSHANASMSRENRVKT 77

Query: 61  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 120
           VLEERPAFKFAAHCNSEFP+HIESIE TFWGPERIRY+S GKDA SSHG+RM+CGICQKL
Sbjct: 78  VLEERPAFKFAAHCNSEFPDHIESIEKTFWGPERIRYNSFGKDAFSSHGMRMVCGICQKL 137

Query: 121 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 180
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLC EP  ++DD
Sbjct: 138 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPPPEVDD 197

Query: 181 SKG 183
           SKG
Sbjct: 198 SKG 200

[Close]

BLAST of MC06g0567 vs. NCBI nr
Match: XP_038878631.1 (uncharacterized protein LOC120070818 isoform X1 [Benincasa hispida])

HSP 1 Score: 327 bits (837), Expect = 1.01e-111
Identity = 158/184 (85.87%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   YVAGVVPFSNQMDVLSEE-DQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVR 60
           +++G+VPFSNQMDV SEE D+S ARPVFMKRSRHQYSHQYCRRGSTS ANAS SRENRV+
Sbjct: 18  HLSGMVPFSNQMDVRSEEQDRSPARPVFMKRSRHQYSHQYCRRGSTSHANASMSRENRVK 77

Query: 61  TVLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQK 120
           TVLEERPAFKFAAHCNSEFP+HIESIE TFWGPERIRY+S GKDA SSHG+RM+CGICQK
Sbjct: 78  TVLEERPAFKFAAHCNSEFPDHIESIEKTFWGPERIRYNSFGKDAFSSHGMRMVCGICQK 137

Query: 121 LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKID 180
           LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLC EP  ++D
Sbjct: 138 LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPPPEVD 197

Query: 181 DSKG 183
           DSKG
Sbjct: 198 DSKG 201

[Close]

BLAST of MC06g0567 vs. NCBI nr
Match: TYK06338.1 (uncharacterized protein E5676_scaffold163G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 323 bits (828), Expect = 2.30e-110
Identity = 158/183 (86.34%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 1   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 60
           +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 18  HLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRT 77

Query: 61  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 120
           VLEERPAFKFAAHCNSEFP+ IESIE+TF GPERIRY+SLGKDAISSH VRM+CGICQKL
Sbjct: 78  VLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLVRMVCGICQKL 137

Query: 121 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 180
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DD
Sbjct: 138 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDD 197

Query: 181 SKG 183
           SKG
Sbjct: 198 SKG 200

[Close]

BLAST of MC06g0567 vs. NCBI nr
Match: KAG7023486.1 (hypothetical protein SDJN02_14511, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322 bits (825), Expect = 3.90e-110
Identity = 156/181 (86.19%), Postives = 168/181 (92.82%), Query Frame = 0


Query: 1   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 60
           YVAG+VPFSNQMDV SEED+SLARP+FMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 5   YVAGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64

Query: 61  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 120
           +LE+RPAFKFAAHCNSEFP+HIES E+TF  PERIRY+SLGKD ISSHG +++CGICQKL
Sbjct: 65  ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL 124

Query: 121 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 180
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLE  S VEDRSDP CPLC EP  K+DD
Sbjct: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDD 184

[Close]

BLAST of MC06g0567 vs. ExPASy TrEMBL
Match: A0A6J1BZ68 (uncharacterized protein LOC111006826 OS=Momordica charantia OX=3673 GN=LOC111006826 PE=4 SV=1)

HSP 1 Score: 370 bits (949), Expect = 4.01e-129
Identity = 180/183 (98.36%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 60
           +++GVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 19  HLSGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 78

Query: 61  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 120
           VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL
Sbjct: 79  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 138

Query: 121 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 180
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD
Sbjct: 139 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 198

Query: 181 SKG 183
           SKG
Sbjct: 199 SKG 201

[Close]

BLAST of MC06g0567 vs. ExPASy TrEMBL
Match: A0A5D3C5B4 (RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00020 PE=4 SV=1)

HSP 1 Score: 323 bits (828), Expect = 1.11e-110
Identity = 158/183 (86.34%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 1   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 60
           +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 18  HLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRT 77

Query: 61  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 120
           VLEERPAFKFAAHCNSEFP+ IESIE+TF GPERIRY+SLGKDAISSH VRM+CGICQKL
Sbjct: 78  VLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLVRMVCGICQKL 137

Query: 121 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 180
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DD
Sbjct: 138 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDD 197

Query: 181 SKG 183
           SKG
Sbjct: 198 SKG 200

[Close]

BLAST of MC06g0567 vs. ExPASy TrEMBL
Match: A0A5A7U906 (RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00690 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 3.19e-110
Identity = 157/183 (85.79%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 1   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 60
           +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 18  HLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRT 77

Query: 61  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 120
           VLEERPAFKFAAHCNSEFP+ IESIE+TF GPERIRY+SLGKDAISSH +RM+CGICQKL
Sbjct: 78  VLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLMRMVCGICQKL 137

Query: 121 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 180
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DD
Sbjct: 138 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDD 197

Query: 181 SKG 183
           SKG
Sbjct: 198 SKG 200

[Close]

BLAST of MC06g0567 vs. ExPASy TrEMBL
Match: A0A1S3B956 (uncharacterized protein LOC103487402 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487402 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 3.19e-110
Identity = 157/183 (85.79%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 1   YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 60
           +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 18  HLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRT 77

Query: 61  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 120
           VLEERPAFKFAAHCNSEFP+ IESIE+TF GPERIRY+SLGKDAISSH +RM+CGICQKL
Sbjct: 78  VLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLMRMVCGICQKL 137

Query: 121 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 180
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DD
Sbjct: 138 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDD 197

Query: 181 SKG 183
           SKG
Sbjct: 198 SKG 200

[Close]

BLAST of MC06g0567 vs. ExPASy TrEMBL
Match: A0A1S4DUW7 (uncharacterized protein LOC103487402 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487402 PE=4 SV=1)

HSP 1 Score: 320 bits (821), Expect = 1.34e-109
Identity = 157/180 (87.22%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 4   GVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLE 63
           G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRTVLE
Sbjct: 22  GMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLE 81

Query: 64  ERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKLMRR 123
           ERPAFKFAAHCNSEFP+ IESIE+TF GPERIRY+SLGKDAISSH +RM+CGICQKLMRR
Sbjct: 82  ERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRR 141

Query: 124 KLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKG 183
           KLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DDSKG
Sbjct: 142 KLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKG 201

[Close]

BLAST of MC06g0567 vs. TAIR 10
Match: AT1G75400.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-12
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 111 RMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPL 170
           + +CG C KL+  +     +++++ ELP+AAVL CGHVYHA+CLE  +   ++ DP CP+
Sbjct: 278 QQVCGACSKLLTER-----SSIATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPI 334

Query: 171 CT 173
           CT
Sbjct: 338 CT 334

[Close]

BLAST of MC06g0567 vs. TAIR 10
Match: AT1G19680.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-11
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 84  SIENTFWGPERIRYS--SLGKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAA 143
           S +N   G  R R S  S  + + S    +  CG C KL+  +     + ++  +LP+ A
Sbjct: 241 SFDNEHLGSGRRRLSGCSSSRFSCSPSVDQQTCGRCSKLLTER-----SPVARFDLPIPA 300

Query: 144 VLVCGHVYHADCLEIRSKVEDRSDPPCPLCTE 174
           VL CGHVYHA CLE  +   ++ DP CP+CTE
Sbjct: 301 VLACGHVYHAACLETMTNETEKYDPTCPICTE 327

[Close]

BLAST of MC06g0567 vs. TAIR 10
Match: AT4G39140.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-11
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 100 LGKDAISSHGVRM------LCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAD 159
           L +D I  HG RM       CG C + L  + L        ++EL V+A+L CGHVYH +
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 160 CLEIRSKVEDRSDPPCPLCT 173
           CLE  +   D+ DP CP+CT
Sbjct: 300 CLEQMTPEIDKFDPSCPICT 319

[Close]

BLAST of MC06g0567 vs. TAIR 10
Match: AT4G39140.2 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-11
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 100 LGKDAISSHGVRM------LCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAD 159
           L +D I  HG RM       CG C + L  + L        ++EL V+A+L CGHVYH +
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 160 CLEIRSKVEDRSDPPCPLCT 173
           CLE  +   D+ DP CP+CT
Sbjct: 300 CLEQMTPEIDKFDPSCPICT 319

[Close]

BLAST of MC06g0567 vs. TAIR 10
Match: AT4G39140.3 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-11
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 100 LGKDAISSHGVRM------LCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAD 159
           L +D I  HG RM       CG C + L  + L        ++EL V+A+L CGHVYH +
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 160 CLEIRSKVEDRSDPPCPLCT 173
           CLE  +   D+ DP CP+CT
Sbjct: 300 CLEQMTPEIDKFDPSCPICT 319

The following BLAST results are available for this feature:

BLAST of MC06g0567 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0567 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134599.1	8.28e-129	98.36	uncharacterized protein LOC111006826 [Momordica charantia]	[more]
XP_038878632.1	1.45e-113	86.34	uncharacterized protein LOC120070818 isoform X2 [Benincasa hispida]	[more]
XP_038878631.1	1.01e-111	85.87	uncharacterized protein LOC120070818 isoform X1 [Benincasa hispida]	[more]
TYK06338.1	2.30e-110	86.34	uncharacterized protein E5676_scaffold163G00020 [Cucumis melo var. makuwa]	[more]
KAG7023486.1	3.90e-110	86.19	hypothetical protein SDJN02_14511, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MC06g0567 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZ68	4.01e-129	98.36	uncharacterized protein LOC111006826 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5D3C5B4	1.11e-110	86.34	RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7U906	3.19e-110	85.79	RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3B956	3.19e-110	85.79	uncharacterized protein LOC103487402 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DUW7	1.34e-109	87.22	uncharacterized protein LOC103487402 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of MC06g0567 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75400.1	8.0e-12	45.16	RING/U-box superfamily protein	[more]
AT1G19680.1	1.4e-11	38.04	RING/U-box superfamily protein	[more]
AT4G39140.1	5.2e-11	41.25	RING/U-box superfamily protein	[more]
AT4G39140.2	5.2e-11	41.25	RING/U-box superfamily protein	[more]
AT4G39140.3	5.2e-11	41.25	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 114..171 e-value: 3.2E-4 score: 30.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 114..172 score: 9.863244
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 114..169 e-value: 1.8E-5 score: 24.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 111..177 e-value: 3.0E-7 score: 32.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..183
None	No IPR available	PANTHER	PTHR31150	EXPRESSED PROTEIN	coord: 14..178
None	No IPR available	PANTHER	PTHR31150:SF6	CHROMATIN REGULATOR PHD FAMILY-RELATED	coord: 14..178
None	No IPR available	CDD	cd16448	RING-H2	coord: 114..171 e-value: 2.33094E-4 score: 35.5055
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0567.1	MC06g0567.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding