MC06g0461 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0461
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Small nuclear ribonucleoprotein E
Location	MC06: 3787503 .. 3787722 (-)
RNA-Seq Expression	MC06g0461
Synteny	MC06g0461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTACAGGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGTATGCCTTCTTCCCCCCTCCTTTGCTGTTGTCTGCCTCATCTCTACTTCAATAACAATATCTGAAATGCCTTTTTTTTCTCCTTCAGGGAGGATTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACG

mRNA sequence

GTACAGGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGGAGGATTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACG

Coding sequence (CDS)

GTACAGGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGGAGGATTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACG

Protein sequence

VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

Homology

[Close]

BLAST of MC06g0461 vs. ExPASy Swiss-Prot
Match: Q7ZUG0 (Small nuclear ribonucleoprotein E OS=Danio rerio OX=7955 GN=snrpe PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.0e-11
Identity = 31/41 (75.61%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 3  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN 44
          GFDEYMNLVLDDAEEV++K K++K LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQS 89

[Close]

BLAST of MC06g0461 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.9e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN 44
          GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MC06g0461 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.9e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN 44
          GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MC06g0461 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.9e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN 44
          GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MC06g0461 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.9e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN 44
          GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MC06g0461 vs. NCBI nr
Match: MCI19947.1 (small nuclear ribonucleoprotein E-like [Trifolium medium])

HSP 1 Score: 87.4 bits (215), Expect = 1.55e-21
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 2  QGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 44
          QGFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNT
Sbjct: 1  QGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMNT 43

[Close]

BLAST of MC06g0461 vs. NCBI nr
Match: XP_027332277.1 (small nuclear ribonucleoprotein E-like isoform X1 [Abrus precatorius])

HSP 1 Score: 87.4 bits (215), Expect = 4.78e-21
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 44
          +QGFDEYMNLVLDDAEEVN+KKKS+KTLGRILLKGDNITLMMNT
Sbjct: 44 IQGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNT 87

[Close]

BLAST of MC06g0461 vs. NCBI nr
Match: KAG2407641.1 (uncharacterized protein HKW66_Vig0024630 [Vigna angularis])

HSP 1 Score: 87.0 bits (214), Expect = 6.44e-21
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 44
          +QGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMM+T
Sbjct: 44 IQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMST 87

[Close]

BLAST of MC06g0461 vs. NCBI nr
Match: GAU31043.1 (hypothetical protein TSUD_214790 [Trifolium subterraneum])

HSP 1 Score: 85.5 bits (210), Expect = 1.28e-20
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 3  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 44
          GFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNT
Sbjct: 17 GFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMNT 58

[Close]

BLAST of MC06g0461 vs. NCBI nr
Match: KHN17560.1 (Small nuclear ribonucleoprotein E [Glycine soja])

HSP 1 Score: 85.1 bits (209), Expect = 1.50e-20
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 2  QGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 44
          +GFDEYMNLVLDDAEEVNIKKKS+KTLGRILLKGDNITLMMNT
Sbjct: 8  RGFDEYMNLVLDDAEEVNIKKKSRKTLGRILLKGDNITLMMNT 50

[Close]

BLAST of MC06g0461 vs. ExPASy TrEMBL
Match: A0A392Q7T6 (Sm protein E (Fragment) OS=Trifolium medium OX=97028 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.52e-22
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 2  QGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 44
          QGFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNT
Sbjct: 1  QGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMNT 43

[Close]

BLAST of MC06g0461 vs. ExPASy TrEMBL
Match: A0A2Z6MMY3 (Sm protein E OS=Trifolium subterraneum OX=3900 GN=TSUD_214790 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.21e-21
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 3  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 44
          GFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNT
Sbjct: 17 GFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMNT 58

[Close]

BLAST of MC06g0461 vs. ExPASy TrEMBL
Match: A0A151SRH5 (Small nuclear ribonucleoprotein E OS=Cajanus cajan OX=3821 GN=KK1_003688 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.69e-21
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 3  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 44
          GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
Sbjct: 45 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MC06g0461 vs. ExPASy TrEMBL
Match: A0A6J1I7N4 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.18e-21
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 3  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 44
          GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
Sbjct: 45 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MC06g0461 vs. ExPASy TrEMBL
Match: A0A6J1C3K6 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.18e-21
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 3  GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 44
          GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
Sbjct: 45 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 86

[Close]

BLAST of MC06g0461 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-14
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 45
          + GFDEYMNLVLD+AEEV+IKK ++K LGRILLKGDNITLMMNT
Sbjct: 43 ITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLMMNT 86

[Close]

BLAST of MC06g0461 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-14
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1  VQGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN 44
          + GFDEYMNLVLD+AEEV+IKKK++K LGRILLKGDNITLMMN
Sbjct: 43 ITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITLMMN 85

[Close]

BLAST of MC06g0461 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.7e-06
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  VQGFDEYMNLVLDDAEEVNIKKKSKKTLG 30
          + GFDEYMNLVLD+AEEV+IKK ++K LG
Sbjct: 43 ITGFDEYMNLVLDEAEEVSIKKNTRKPLG 71

The following BLAST results are available for this feature:

BLAST of MC06g0461 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7ZUG0	6.0e-11	75.61	Small nuclear ribonucleoprotein E OS=Danio rerio OX=7955 GN=snrpe PE=3 SV=1	[more]
A4FUI2	7.9e-11	75.61	Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1	[more]
P62303	7.9e-11	75.61	Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1	[more]
P62304	7.9e-11	75.61	Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1	[more]
P62305	7.9e-11	75.61	Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1	[more]

BLAST of MC06g0461 vs. NCBI nr


Match Name	E-value	Identity	Description
MCI19947.1	1.55e-21	97.67	small nuclear ribonucleoprotein E-like [Trifolium medium]	[more]
XP_027332277.1	4.78e-21	93.18	small nuclear ribonucleoprotein E-like isoform X1 [Abrus precatorius]	[more]
KAG2407641.1	6.44e-21	95.45	uncharacterized protein HKW66_Vig0024630 [Vigna angularis]	[more]
GAU31043.1	1.28e-20	97.62	hypothetical protein TSUD_214790 [Trifolium subterraneum]	[more]
KHN17560.1	1.50e-20	95.35	Small nuclear ribonucleoprotein E [Glycine soja]	[more]

BLAST of MC06g0461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A392Q7T6	7.52e-22	97.67	Sm protein E (Fragment) OS=Trifolium medium OX=97028 PE=3 SV=1	[more]
A0A2Z6MMY3	6.21e-21	97.62	Sm protein E OS=Trifolium subterraneum OX=3900 GN=TSUD_214790 PE=3 SV=1	[more]
A0A151SRH5	8.69e-21	100.00	Small nuclear ribonucleoprotein E OS=Cajanus cajan OX=3821 GN=KK1_003688 PE=3 SV...	[more]
A0A6J1I7N4	9.18e-21	100.00	Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE...	[more]
A0A6J1C3K6	9.18e-21	100.00	Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114...	[more]

BLAST of MC06g0461 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18740.1	1.2e-14	81.82	Small nuclear ribonucleoprotein family protein	[more]
AT4G30330.1	1.2e-14	83.72	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.2	2.7e-06	72.41	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.100		coord: 1..44 e-value: 4.5E-19 score: 70.1
None	No IPR available	PANTHER	PTHR11193:SF6	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 2..44
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 2..41 e-value: 4.7E-14 score: 51.8
IPR027078	Small nuclear ribonucleoprotein E	PANTHER	PTHR11193	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 2..44
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 2..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0461.1	MC06g0461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding