MC06g0066 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0066
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal protein S4
Location	MC06: 428630 .. 428977 (+)
RNA-Seq Expression	MC06g0066
Synteny	MC06g0066

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTTAAATCCCTATTCTTATCGAATAGAAGGAACGAGAAAAACCGAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATA

mRNA sequence

GCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTTAAATCCCTATTCTTATCGAATAGAAGGAACGAGAAAAACCGAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATA

Coding sequence (CDS)

GCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTTAAATCCCTATTCTTATCGAATAGAAGGAACGAGAAAAACCGAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATA

Protein sequence

AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI

Homology

[Close]

BLAST of MC06g0066 vs. ExPASy Swiss-Prot
Match: Q31708 (Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 2.1e-42
Identity = 94/118 (79.66%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNS--SLYSNSTYCSASPHQFT 60
           AEH RMKRNL   KSLFLS RR +KN NLPTRT SPIVYNS  SLYSNSTYC ASPH+ T
Sbjct: 247 AEHKRMKRNL--LKSLFLSKRRKDKNLNLPTRTISPIVYNSSLSLYSNSTYCFASPHKLT 306

Query: 61  MKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 117
           MK +IKRIELPTHY EVN+RT KAVV YGPNIGHIPHDIRLKD NL L S NGRGQNI
Sbjct: 307 MKRRIKRIELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLKDLNLLLWSRNGRGQNI 362

[Close]

BLAST of MC06g0066 vs. NCBI nr
Match: YP_009913620.1 (ribosomal protein S4 [Luffa acutangula] >QLJ93050.1 ribosomal protein S4 [Luffa acutangula])

HSP 1 Score: 235 bits (600), Expect = 9.06e-75
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 60
           AEHNRMKRNLYH KSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK
Sbjct: 240 AEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 299

Query: 61  SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 116
           SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 300 SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 355

[Close]

BLAST of MC06g0066 vs. NCBI nr
Match: GAY67605.1 (hypothetical protein CUMW_257870 [Citrus unshiu])

HSP 1 Score: 228 bits (581), Expect = 2.25e-74
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 60
           AEHNRMKRNLYHFKSLFLS RRNEKNRN PTRTRSPIVYNSSLYSNSTYCSASPHQFTMK
Sbjct: 58  AEHNRMKRNLYHFKSLFLSKRRNEKNRNFPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 117

Query: 61  SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 116
            +IKRIELPTHYSEVNHRT KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 118 RRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 173

[Close]

BLAST of MC06g0066 vs. NCBI nr
Match: WP_131796643.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 230 bits (587), Expect = 7.74e-74
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 60
           AEHNRMKRN YHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK
Sbjct: 161 AEHNRMKRNFYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 220

Query: 61  SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 116
            KIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKD NLPLRSGNGRGQNI
Sbjct: 221 RKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDLNLPLRSGNGRGQNI 276

[Close]

BLAST of MC06g0066 vs. NCBI nr
Match: WP_131747055.1 (hypothetical protein [Candidatus Frankia meridionalis])

HSP 1 Score: 234 bits (597), Expect = 1.06e-73
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 60
           AEHNRMKRN YHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK
Sbjct: 290 AEHNRMKRNFYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 349

Query: 61  SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 116
            KIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 350 RKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 405

[Close]

BLAST of MC06g0066 vs. NCBI nr
Match: QDA22810.1 (ribosomal protein S4 [Monotropa hypopitys])

HSP 1 Score: 229 bits (585), Expect = 1.56e-73
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 60
           AEHNRMKRNLYHFKSLFLS RRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK
Sbjct: 161 AEHNRMKRNLYHFKSLFLSKRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 220

Query: 61  SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 116
            K+KRIELPTHYSEVNHRT KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 221 RKMKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 276

[Close]

BLAST of MC06g0066 vs. ExPASy TrEMBL
Match: A0A7D6BZG8 (Ribosomal protein S4 OS=Luffa acutangula OX=56866 GN=rps4 PE=3 SV=1)

HSP 1 Score: 235 bits (600), Expect = 4.39e-75
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 60
           AEHNRMKRNLYH KSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK
Sbjct: 240 AEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 299

Query: 61  SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 116
           SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 300 SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 355

[Close]

BLAST of MC06g0066 vs. ExPASy TrEMBL
Match: A0A2H5QTJ6 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_257870 PE=3 SV=1)

HSP 1 Score: 228 bits (581), Expect = 1.09e-74
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 60
           AEHNRMKRNLYHFKSLFLS RRNEKNRN PTRTRSPIVYNSSLYSNSTYCSASPHQFTMK
Sbjct: 58  AEHNRMKRNLYHFKSLFLSKRRNEKNRNFPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 117

Query: 61  SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 116
            +IKRIELPTHYSEVNHRT KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 118 RRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 173

[Close]

BLAST of MC06g0066 vs. ExPASy TrEMBL
Match: B6VJZ4 (Ribosomal protein S4 OS=Vitis vinifera OX=29760 GN=rps4 PE=3 SV=1)

HSP 1 Score: 229 bits (585), Expect = 9.93e-73
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 60
           AEHNRMKRNLYHFKSLFLS RRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK
Sbjct: 247 AEHNRMKRNLYHFKSLFLSKRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 306

Query: 61  SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 116
            +IKRIELPTHYSEVNHRT KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 307 RRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 362

[Close]

BLAST of MC06g0066 vs. ExPASy TrEMBL
Match: A0A654ICA4 (Rps4 protein OS=Vitis riparia x Vitis cinerea OX=2018007 GN=rps4 PE=3 SV=1)

HSP 1 Score: 229 bits (585), Expect = 9.93e-73
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 60
           AEHNRMKRNLYHFKSLFLS RRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK
Sbjct: 247 AEHNRMKRNLYHFKSLFLSKRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 306

Query: 61  SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 116
            +IKRIELPTHYSEVNHRT KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 307 RRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 362

[Close]

BLAST of MC06g0066 vs. ExPASy TrEMBL
Match: A0A2H4YAG7 (Ribosomal protein subunit S4 OS=Cinchona pubescens OX=50278 GN=rps4 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 1.75e-72
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 60
           AEHNRMKRNLYHFKSLFLS RRNEKNRN+PTRTRSPIVYNSSLYSNSTYCSASPHQFTMK
Sbjct: 161 AEHNRMKRNLYHFKSLFLSKRRNEKNRNIPTRTRSPIVYNSSLYSNSTYCSASPHQFTMK 220

Query: 61  SKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 116
            KIKRIELPTHYSEVNHRT KAVVSYGPNIGHIPHDIRLKDPNL LRSGNGRGQNI
Sbjct: 221 RKIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLLLRSGNGRGQNI 276

[Close]

BLAST of MC06g0066 vs. TAIR 10
Match: AT2G07734.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 190.7 bits (483), Expect = 6.8e-49
Identity = 100/118 (84.75%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNS--SLYSNSTYCSASPHQFT 60
           AEH RMKRNL   KSLFLS RR +KN NLPTRT SPIVYNS  SLYSNSTYC ASPH+ T
Sbjct: 247 AEHKRMKRNL--LKSLFLSKRRKDKNLNLPTRTISPIVYNSSLSLYSNSTYCFASPHKLT 306

Query: 61  MKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 117
           MK +IKRIELPTHYSEVNHRT KAVVSYGPNIGHIPHDIRLKDPNLPLRS NGRGQNI
Sbjct: 307 MKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQNI 362

[Close]

BLAST of MC06g0066 vs. TAIR 10
Match: ATMG00290.1 (mitochondrial ribosomal protein S4 )

HSP 1 Score: 190.7 bits (483), Expect = 6.8e-49
Identity = 100/118 (84.75%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 1   AEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNS--SLYSNSTYCSASPHQFT 60
           AEH RMKRNL   KSLFLS RR +KN NLPTRT SPIVYNS  SLYSNSTYC ASPH+ T
Sbjct: 247 AEHKRMKRNL--LKSLFLSKRRKDKNLNLPTRTISPIVYNSSLSLYSNSTYCFASPHKLT 306

Query: 61  MKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 117
           MK +IKRIELPTHYSEVNHRT KAVVSYGPNIGHIPHDIRLKDPNLPLRS NGRGQNI
Sbjct: 307 MKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQNI 362

The following BLAST results are available for this feature:

BLAST of MC06g0066 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q31708	2.1e-42	79.66	Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1...	[more]

BLAST of MC06g0066 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009913620.1	9.06e-75	99.14	ribosomal protein S4 [Luffa acutangula] >QLJ93050.1 ribosomal protein S4 [Luffa ...	[more]
GAY67605.1	2.25e-74	95.69	hypothetical protein CUMW_257870 [Citrus unshiu]	[more]
WP_131796643.1	7.74e-74	97.41	hypothetical protein [Candidatus Frankia datiscae]	[more]
WP_131747055.1	1.06e-73	98.28	hypothetical protein [Candidatus Frankia meridionalis]	[more]
QDA22810.1	1.56e-73	96.55	ribosomal protein S4 [Monotropa hypopitys]	[more]

BLAST of MC06g0066 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7D6BZG8	4.39e-75	99.14	Ribosomal protein S4 OS=Luffa acutangula OX=56866 GN=rps4 PE=3 SV=1	[more]
A0A2H5QTJ6	1.09e-74	95.69	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_257870 PE=3 SV=1	[more]
B6VJZ4	9.93e-73	96.55	Ribosomal protein S4 OS=Vitis vinifera OX=29760 GN=rps4 PE=3 SV=1	[more]
A0A654ICA4	9.93e-73	96.55	Rps4 protein OS=Vitis riparia x Vitis cinerea OX=2018007 GN=rps4 PE=3 SV=1	[more]
A0A2H4YAG7	1.75e-72	95.69	Ribosomal protein subunit S4 OS=Cinchona pubescens OX=50278 GN=rps4 PE=3 SV=1	[more]

BLAST of MC06g0066 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07734.1	6.8e-49	84.75	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]
ATMG00290.1	6.8e-49	84.75	mitochondrial ribosomal protein S4	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0066.1	MC06g0066.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding