MC05g_new0409 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g_new0409
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L35
Location	MC05: 19709998 .. 19711021 (+)
RNA-Seq Expression	MC05g_new0409
Synteny	MC05g_new0409

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGGATGAGTGTATGGGCCCATTTAGGTTGAGCTGTTGACAATTTTGATGAGGCAGTGCAGCCCATTAAGAAATCGTTGGGCCGGCCCACGTTGTGATAGGTCAGTATCCCATTCCAATTCCAATTCCAATTCCAATTCCAAATTCCAGTCATTCATTCATTCTGATTCCAATTTCCACCACTGTTGTTAGAATGCCGGAAATTCAGGGGCGGGCATGGAAAATCACGATTCGTGCCAAGATCAGTAAGTTGTATATCAAGTTCAAGGCGACCGTAAAACGTCCTTCGGGGGAATTCCAACGCCTCCTTAGGCTGGATAAATTGGTCTTCAGAGTGGATTCAGAATCCGGATCTCGGATCCTGCTCCAACAAAGAAGGAGTGTGAAATCCCGGATCCTCAGCTTCGTGAAGAAACATTTCGGGCGCCGCCGATCCAAAAACAGCGTTGGCTTCAAATGCCATTCCTAGTTGCCGAAATTGAAAGTGGAAATGGATGTTGGCGTTTGGGCCGCTTGGTACGAATTAGGAATTGTGAATTTAATTAATTAGTACATAAGGAGGAGTGGGATGAATTAGGAATTTACAGATTGTTGATTGATGTGCAGGAATTAAGGTGTGTGGCTGCTTTTGGCGTTGGATTGGGTGGTGTTTTATGGATCCACAAACGTAAGTTCCTTTGCCTAATTGCTCTGCTTCCTGTCTTACTGCTACAAACTCATACATTTCTACAACATTTTTATTTAGGGCACCTCTGCTAGTTTCTCATTCCAATCCTTACTTCTTCTTTGTACATCAACTGAGAAGCTCGGTTCGCTATTTATTTATTTTGGTTTTTTTCCTCATTTTTTTATTGTCTTGAGAAAGAAAAACATTTTCCTCATTTTGTTTTTCTGTAATTAGTAAATCATTTTAATTGAATAATTAATTATAATGATTGAAAAATCAATATTTTTATTACATCAATTTAAATTAAAAAATTAATTTGGAACATAATATACATCACTCAATCAATCATTATTAATT

mRNA sequence

ATGCCGGAAATTCAGGGGCGGGCATGGAAAATCACGATTCGTGCCAAGATCAGTAAGTTGTATATCAAGTTCAAGGCGACCGTAAAACGTCCTTCGGGGGAATTCCAACGCCTCCTTAGGCTGGATAAATTGGTCTTCAGAGTGGATTCAGAATCCGGATCTCGGATCCTGCTCCAACAAAGAAGGAGTGTGAAATCCCGGATCCTCAGCTTCGTGAAGAAACATTTCGGGCGCCGCCGATCCAAAAACAGCGTTGGCTTCAAATGCCATTCCTAG

Coding sequence (CDS)

ATGCCGGAAATTCAGGGGCGGGCATGGAAAATCACGATTCGTGCCAAGATCAGTAAGTTGTATATCAAGTTCAAGGCGACCGTAAAACGTCCTTCGGGGGAATTCCAACGCCTCCTTAGGCTGGATAAATTGGTCTTCAGAGTGGATTCAGAATCCGGATCTCGGATCCTGCTCCAACAAAGAAGGAGTGTGAAATCCCGGATCCTCAGCTTCGTGAAGAAACATTTCGGGCGCCGCCGATCCAAAAACAGCGTTGGCTTCAAATGCCATTCCTAG

Protein sequence

MPEIQGRAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKSRILSFVKKHFGRRRSKNSVGFKCHS

Homology

[Close]

BLAST of MC05g_new0409 vs. NCBI nr
Match: XP_023540743.1 (uncharacterized protein LOC111801019 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115 bits (288), Expect = 4.61e-30
Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 7  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKS 66
          R+WKIT+ AK++ LYIKFKATVKRPSG+F+ LL LDKL+  +DS+S SRIL+QQ R++KS
Sbjct: 7  RSWKITVHAKVNDLYIKFKATVKRPSGKFRSLLNLDKLLVGLDSKSESRILVQQHRTLKS 66

Query: 67 RILSFVKKHFGRRRSKNSVGFK 88
          RI+SFVKKHF RRRSK  VGFK
Sbjct: 67 RIISFVKKHFRRRRSKTGVGFK 88

[Close]

BLAST of MC05g_new0409 vs. NCBI nr
Match: KAG7027863.1 (hypothetical protein SDJN02_09040 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115 bits (288), Expect = 4.61e-30
Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 7  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKS 66
          R+WKIT+ AK++ LYIKFKATVKRPSG+F+ LL LDKL+  +DS+S SRIL+QQ R++KS
Sbjct: 7  RSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKS 66

Query: 67 RILSFVKKHFGRRRSKNSVGFK 88
          RI+SFVKKHF RRRSK  VGFK
Sbjct: 67 RIISFVKKHFRRRRSKTGVGFK 88

[Close]

BLAST of MC05g_new0409 vs. NCBI nr
Match: KAG6596309.1 (hypothetical protein SDJN03_09489, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (288), Expect = 4.61e-30
Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 7  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKS 66
          R+WKIT+ AK++ LYIKFKATVKRPSG+F+ LL LDKL+  +DS+S SRIL+QQ R++KS
Sbjct: 7  RSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKS 66

Query: 67 RILSFVKKHFGRRRSKNSVGFK 88
          RI+SFVKKHF RRRSK  VGFK
Sbjct: 67 RIISFVKKHFRRRRSKTGVGFK 88

[Close]

BLAST of MC05g_new0409 vs. NCBI nr
Match: KAE8650972.1 (hypothetical protein Csa_002588 [Cucumis sativus])

HSP 1 Score: 102 bits (254), Expect = 5.18e-25
Identity = 53/76 (69.74%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 7  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKS 66
          R++KI+++AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SRILLQ+RR++KS
Sbjct: 9  RSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQRRRTLKS 68

Query: 67 RILSFVKKHFGRRRSK 82
          R+LSFVKKH G RRSK
Sbjct: 69 RMLSFVKKHLGHRRSK 84

[Close]

BLAST of MC05g_new0409 vs. NCBI nr
Match: TYK24910.1 (50S ribosomal protein L35 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.20e-24
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 7  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKS 66
          R++KI++ AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SR+L+Q+RR++KS
Sbjct: 10 RSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRTLKS 69

Query: 67 RILSFVKKHFGRRRSK 82
          R+LSFVKKH GR RSK
Sbjct: 70 RMLSFVKKHLGRCRSK 85

[Close]

BLAST of MC05g_new0409 vs. ExPASy TrEMBL
Match: A0A0A0LCL9 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 2.77e-25
Identity = 53/76 (69.74%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 7  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKS 66
          R++KI+++AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SRILLQ+RR++KS
Sbjct: 7  RSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQRRRTLKS 66

Query: 67 RILSFVKKHFGRRRSK 82
          R+LSFVKKH G RRSK
Sbjct: 67 RMLSFVKKHLGHRRSK 82

[Close]

BLAST of MC05g_new0409 vs. ExPASy TrEMBL
Match: A0A5D3DNQ2 (50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00230 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.79e-25
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 7  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKS 66
          R++KI++ AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SR+L+Q+RR++KS
Sbjct: 10 RSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRTLKS 69

Query: 67 RILSFVKKHFGRRRSK 82
          R+LSFVKKH GR RSK
Sbjct: 70 RMLSFVKKHLGRCRSK 85

[Close]

BLAST of MC05g_new0409 vs. ExPASy TrEMBL
Match: A0A1S3B4Y8 (uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.21e-24
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 7  RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKS 66
          R++KI++ AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SR+L+Q+RR++KS
Sbjct: 7  RSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRTLKS 66

Query: 67 RILSFVKKHFGRRRSK 82
          R+LSFVKKH GR RSK
Sbjct: 67 RMLSFVKKHLGRCRSK 82

[Close]

BLAST of MC05g_new0409 vs. ExPASy TrEMBL
Match: A0A5A7TM08 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005850 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.92e-23
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 7   RAWKITIRAKISKLYIKFKATVKRPSGEFQRLLRLDKLVFRVDSESGSRILLQQRRSVKS 66
           R++KI++ AKI  LYIK KAT+K PSG+FQRLL+LDKL+  VDS+S SR+L+Q+RR++KS
Sbjct: 176 RSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRTLKS 235

Query: 67  RILSFVKKHFGRRRSK 82
           R+LSFVKKH GR RSK
Sbjct: 236 RMLSFVKKHLGRCRSK 251

[Close]

BLAST of MC05g_new0409 vs. ExPASy TrEMBL
Match: A0A5D2RE44 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A02G003900v1 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.14e-06
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 7  RAWKITIRAKISKLYIKFKATVKRPSGEFQR---LLRLDKLVFRVDSESGSRILL--QQR 66
          ++WK+ I+A+      K KAT   PSGEF R   LLRL K + ++  +SGS + +  QQ+
Sbjct: 11 QSWKLNIQARTQIFNFKLKATKILPSGEFHRFSLLLRLHKFILKLRLKSGSTVSISSQQK 70

Query: 67 RSVKSRILSFVKK 74
          RS KSR LSF++K
Sbjct: 71 RSFKSRFLSFLEK 83

The following BLAST results are available for this feature:

BLAST of MC05g_new0409 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0409 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540743.1	4.61e-30	70.73	uncharacterized protein LOC111801019 [Cucurbita pepo subsp. pepo]	[more]
KAG7027863.1	4.61e-30	70.73	hypothetical protein SDJN02_09040 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596309.1	4.61e-30	70.73	hypothetical protein SDJN03_09489, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8650972.1	5.18e-25	69.74	hypothetical protein Csa_002588 [Cucumis sativus]	[more]
TYK24910.1	1.20e-24	67.11	50S ribosomal protein L35 [Cucumis melo var. makuwa]	[more]

BLAST of MC05g_new0409 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCL9	2.77e-25	69.74	50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1	[more]
A0A5D3DNQ2	5.79e-25	67.11	50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B4Y8	2.21e-24	67.11	uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=...	[more]
A0A5A7TM08	3.92e-23	67.11	RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D2RE44	1.14e-06	45.21	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A02G003900v1 P...	[more]

BLAST of MC05g_new0409 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g_new0409.1	MC05g_new0409.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome