MC05g_new0396 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g_new0396
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC05: 19535482 .. 19539849 (+)
RNA-Seq Expression	MC05g_new0396
Synteny	MC05g_new0396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCTCAACGGGGCCATATGATTATCAATCGTCGACGGCAAAATATAAACGCCATTTTAGGCGCACCAACTTTTGAATGGGGAAAAAAAAAATAACGCAGTGGATAATAAATAAAATAGAGATAGAAAATTTGTTATTTGTGAAGTGTTCTCTGCACTGTTCTTTCAAATCGTTGTTTATATAAAGGCCACGCAACCTAGTAAAAATGGTAAAAATCAAAAGGAGGTTAAAGAAGCACGTATAAGCTTTTTAACGATTCTCGTGCAAGTTATATGCGTCACCAAAAGGAGGGTAGGCCAAGCAGCTATTCCGAATGACCTTCTTCTCTTGAGAGGAGCCAATTTGTAGAATATTACCAGGGGCTCGATTTAACCCAGAGAGAGTTAATTTTTATGGAGCCTGAATTGGTTCGATTGGCTTTAGATCATGATCAGGAGGAAAATAGAGAGAGATAGAGATCGAGAATACGAAAAAGAATCAACATAGCCGCGATTAGGGTTTTGCAGAAGCTTAAATTAAATTCAAGGTCCGAATTCCATGGCGACTCGGAGCCGGAGGTCGGGGACGAGCAACCGGACTCCGGCAATGAGACATGGAAATAGTCGCTGCAGCCACGGAGGAAGCGACCAACCATCGCCGGCGAAAACCACCTGCCCTAAAAATCAAAGTCTCCGTGCCGGAAAACAGAGCAATGGAGACGCAGGTATTTATTTATTTTCAGGACAGGTTACTGAAAAACAGAAACTCACAATCAACTTAAATTGCATTTATAAAAATCGCATTATACTTGTATCACCAATATACACGAACTTGAATCATTATGAATAAAAGAATAATTGGAATACAAACTGACAAAAACAAAAGAATATATCTCTCTTCTACTATAACAAATAAAATAATAATACCCATTTATTCTTCTCATCTGGGTGGTAATCTATATAATTCTATGTCGATATTTAGGTCTATTCATTTGCTGGTTGATTTTTTGCGCCATCATCTCCATCACCGGAAGTGGAAGCTGCCTTAATCTCCTCCAGTTGCTGGAGAATTTGCTGAACATCTGGCCGAGCCGCCGGCGAGGGATCCACACAATGCAGGGCAAGTTTCAAAGTGTTCAGAAGTTCATCACCAATATTTGGCGTATCTTTCATAAGCTCCAAATCAAATACTTCATTGGTCCACTCCTCCTTAACTATTGAGGCCACCCACTGAGGTAAATCCATCCCATCCATGGCTTCTCCAGGAGATTTTCCAGTCAAAAGTTCCAATATTATGACTCCAAGGCTGTAAACATCTGTCTTTGTTGTGGTTTTCTTGGTTTTTGTTAGCTCAGGTGCATTATAGCCCTGTGTTCCTGCAGTGGCAATCACATTAGTAGCTGCAGCTGAAGTCATGAGCCTAGGAAGCCCAAAATCTGCAATTCGAGCATTAGTTTGATCATCCAGCAGAATGTTGCTGGATGTGAGGTTCCCATGGATTAGATTCTCCTCTGTGTGGAGGTAGCCCAACCCACTCGTAATTCCGATTGCTATCTTCATCCTTGTCGGCCAATCGACTGTTGTTTCCGGTCCACGAGCTGTATACAGTAACACAAGTAAGTACAAAAGAAGTTGAGTATGGCTTAGCTAGATTAGTAACCTTATTTATGAGTTGTAAGTCGAGTCTGTGCCCTTTGTTTGAACTGCAACATTTTTAAAAAATCATGAATAGTAAACTTTTAGAGCACATTGTTGAGTTTGCTTACCATGAAGGAAGGAAGAGAGGCTTCCTCTAGGCATGTAATCAAAGACAAGGAGCTTCTCTCCTTTGGGGCCCAAGTAGTAGGCTCTAAGAGCAAGGAGATTCGAGTGACGAATTTTTCCGAGTCCTGCAACTTCGGTTTCAAATTCCTTCTGCCCTTTTGTTGTCTTCTCCCTCAGTCTTTTCACTGCAACTTCATTACCATCTTCTAATGTTGCTTTGTATGCTGTTCCATATGTGCTCTTTCCCATGATCTCCGCAGTTGCACACAGAAGATCATCAGCTGTGAAAACAAATGGCCCGTCGAAATGGACTAGTTTTCCACCAGCTTCGCCCGTTGCGACATCGGTGCTGCCTGGTGCTGCCTTTTCGATGCTCCTTGCAGCAGCTTGCTTGGGTGTTGTTTTACCATTTGTCTTCGCAGCTCTTTTTGTCAACAGACAACACAGCAAAATTGCACAAAGAAGAAGAAGAAGCACCAACAGAGCTCCTGCTGCTATCAGAATTATGTCCTTTACACTAAGTCTGCGGTGGCGATGCGGTTTCATGACATCTATTGATGGAGATGTAAGATTATTCTGTGGAGAGGGAGCTGGTGGACATGGGGATGAAGTACTAAAACCACACAGTTGGAGGTTCCCTACAAAAGAGCTCGCATTGAACTTATTTGACAGGAGAATGGGAACAGGGCCAGAGAGATTGTTGTAAGAGACATTGAAGGACGTCAGATTCAACAAACGGGCGAGTGAAACTGGAATTGCTCCTGTCAAATTATTTTCCGAGAAATCAAGTTGGCTGATAGCAGAAATGTTCCCAAAACTTGCAGGAATTTCGCCACTAAAACGATTTTTCCCAAGCCTCACCACTGAGAGATTCCGTAACCTGTCAATATCTCCTGAAATCTGGCTATCAAGGCGATTATTCTCGACATTCAATAATTCAAGAGAGGAGAGATTGAAGAAGCTTGAAGGGAAGCTGCCATTAATGGCGTTGTTGGATAAATCCAAAAGGCGAAGCCTTTTCAGCCTGCCTATTTCACCTGGTATAGCCCCAGAGATTCTGTTTTCACTAATGGAAATCTCTTGAAGCCATTCCATTTTTCCCAGAGAAGCTGGAACCCGTCCAGTTATAATATTATGATCAAGTGTCAAAACCCCAAGTGGGCAAGTTCTGTTCCCAGAACCACCCCAAGAATCTGGGACAGTACCAGAAATATTATTGTGCTGGAGAGCCAGAATTATAAGAGAAAACGACTGCGTAAAACTACTTGGAATAGATCCAGACAATGAATTGTAACTCAAATTTACCCTGATCAATTTGGTAGAATTTGCAAGAGCAGAGGGGATTTCTCCGGTGAGCAAATTGTTGCTCAAATCAAGAGTTTGAAGAAGAGGAAGGTTACCAATTGAAGGAGGAATAGACCCTGAAAATTTGTTGTTGAAAAGGTAAACTCCTCTGAGATTTGGAAGGTACCCAAGAGACGGAGGGACGGCGCCGGAGATTACGTTATCGTGGAGGCTGAGCTTCCTGAGTTCCCGGAGCTGCCCTATCTCCTCGGAAAGCCGGCCGGCGAGGGCCTTCCATGGAAGCTGTATGGCAATGACCTGCCCCTTCACACACTTGATTCCTACCCACCGCCCGGAACAAGCTCCATTACTGCCATTCCAGCTACGTAGAACTCCTTTTAGATCGATAAGTTGGCTCTTTAAAGCTTGAAGAGCTTGATAATCTCCTTGCGTAACAGCAACTCCGTCCCACATCTGGCCGGAGACTGGTTGAAGAGAAAAGGCCAAGATATGAGTAAAAATGAGAGCAATGAGCCAGTAAGAACAGTTCCTCCATTGTTGGTTCTTCCATTTCCTGTTCTTACTGGGTAATTTAGAGCAGCACCAAACAGCCGTTTGCTGTTCAAAAAGCTGCATCAACTGAAGTGGGCGTGCCTGAAATTCACTCAGGGAGTGGTGGGTTTTTCCCATGAACAGAAAGGAACTTCAGATTGAGTGGGGAAAGAGAATGGAAACAGAAAGGCGAGCTGGATTCTCCTATTTTCTTGTTCTCTCTCTGTGGGGTTATTTTCTAGGGTTTCCGAAAGTTGGGAAGATAAGTTTTATAGAAGAAGGAAAATGAAGAAAATAACGGAAAAATAATTAGATGAGATGAAGCATGTGAGGATCTGAAATGTTATTATAATTTAGAGTGGGAAAGAGAAGAGAAGAGAAGAGGGCGGATGAGGGATTTACAATGGGGTCAGAGTCTTCATTCTTTTATGTTAACGGCTACATTTTTGTTGGGTTATTCAGGCTACGTGACATATTTTTTTTCCCTTTGCTTCTGTAACGCCTTGTCGCTCCTCCAACGGCTATATTTGATCAGGGTCAGCATAGTAGGTGGATTATGTATTATCGAAACTATGAAACAAACGTACGTCCTGCCCTGCCCTGCCACTTGGGCTCCAGAATTTCCGCCTTTAAATATTATTTATTAAAAAAAAAACCAGGGAAAGGCCTTGCAAACAGGGGTTATCGAATTGAATTGAAACGTTAAACTAAACCAGTTAGATCTGTTTAATTTGGTTATTTGGCCGTTTATAAATTCTTCAACTGTTTCAGGACTTTTTTTAATTTGTT

mRNA sequence

ATGATCTCCGCAGTTGCACACAGAAGATCATCAGCTGTGAAAACAAATGGCCCGTCGAAATGGACTAGTTTTCCACCAGCTTCGCCCGTTGCGACATCGGTGCTGCCTGGTGCTGCCTTTTCGATGCTCCTTGCAGCAGCTTGCTTGGGTGTTGTTTTACCATTTGTCTTCGCAGCTCTTTTTGTCAACAGACAACACAGCAAAATTGCACAAAGAAGAAGAAGAAGCACCAACAGAGCTCCTGCTGCTATCAGAATTATGTCCTTTACACTAAGTCTGCGGTGGCGATGCGGTTTCATGACATCTATTGATGGAGATGTAAGATTATTCTGTGGAGAGGGAGCTGGTGGACATGGGGATGAAGTACTAAAACCACACAGTTGGAGGTTCCCTACAAAAGAGCTCGCATTGAACTTATTTGACAGGAGAATGGGAACAGGGCCAGAGAGATTGTTGTAA

Coding sequence (CDS)

ATGATCTCCGCAGTTGCACACAGAAGATCATCAGCTGTGAAAACAAATGGCCCGTCGAAATGGACTAGTTTTCCACCAGCTTCGCCCGTTGCGACATCGGTGCTGCCTGGTGCTGCCTTTTCGATGCTCCTTGCAGCAGCTTGCTTGGGTGTTGTTTTACCATTTGTCTTCGCAGCTCTTTTTGTCAACAGACAACACAGCAAAATTGCACAAAGAAGAAGAAGAAGCACCAACAGAGCTCCTGCTGCTATCAGAATTATGTCCTTTACACTAAGTCTGCGGTGGCGATGCGGTTTCATGACATCTATTGATGGAGATGTAAGATTATTCTGTGGAGAGGGAGCTGGTGGACATGGGGATGAAGTACTAAAACCACACAGTTGGAGGTTCCCTACAAAAGAGCTCGCATTGAACTTATTTGACAGGAGAATGGGAACAGGGCCAGAGAGATTGTTGTAA

Protein sequence

MISAVAHRRSSAVKTNGPSKWTSFPPASPVATSVLPGAAFSMLLAAACLGVVLPFVFAALFVNRQHSKIAQRRRRSTNRAPAAIRIMSFTLSLRWRCGFMTSIDGDVRLFCGEGAGGHGDEVLKPHSWRFPTKELALNLFDRRMGTGPERLL

Homology

[Close]

BLAST of MC05g_new0396 vs. ExPASy TrEMBL
Match: A0A0A9LGI5 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.42e-08
Identity = 57/138 (41.30%), Postives = 70/138 (50.72%), Query Frame = 0


Query: 1   MISAVAHRRSSAVKTNGPSKWTSFPPASPV-ATSVLPGAAFSMLLAAA-----------C 60
           MISAVAH RSSAV  +GPSK TSFPP SP  +TS +P   FS   AAA           C
Sbjct: 1   MISAVAHSRSSAVNASGPSKCTSFPPTSPPDSTSAVPDPGFSPRPAAAAAPAPPASLAAC 60

Query: 61  LGVVLPFVFAA--LFVNRQHSKIAQR--RRRSTNRAPAAIRIMSFTLSLRWRCGFMTSID 120
             + +P +     LF+  + S+  QR  R R+    PA I + SF L+L W    M S  
Sbjct: 61  FALRVPVLLLEEDLFLVTKQSRRQQRSSRMRTPTTIPAIISMSSFLLNLLWPRP-MASCA 120

Query: 121 GDVRLFCGEGAGGHGDEV 122
           GD     G+G  G G E 
Sbjct: 121 GDPG--AGDGDTGQGVEA 135

[Close]

BLAST of MC05g_new0396 vs. ExPASy TrEMBL
Match: A0A0A9RZK7 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.30e-07
Identity = 54/131 (41.22%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 2   ISAVAHRRSSAVKTNGPSKWTSFPPASPVATSVLPGAAFSMLLAAACLGVVLPFVFAAL- 61
           ISAVAH RSSAV  +GPSKWTS PPAS    +  PG  F    AA  +G + PF+  AL 
Sbjct: 15  ISAVAHSRSSAVNESGPSKWTSLPPASAPEPAPPPG--FPP--AALAVGSLAPFLGDALS 74

Query: 62  ---FVNRQHSKIAQRRRRSTNRAPAAIRIMSFTLS-LRWRCGFMTSIDGDVRLFCGEGAG 121
              F+ +  ++  Q R R + + P   +++SF LS L  RC      DGDV    G+ A 
Sbjct: 75  SLSFLQKMRTQ--QNRSRKSKQMPPTAKMISFLLSFLVRRCDNGIGGDGDVT---GDEAE 134

Query: 122 GHGDEVLKPHS 127
               E L P S
Sbjct: 135 VQMAEPLNPQS 136

The following BLAST results are available for this feature:

BLAST of MC05g_new0396 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0396 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9LGI5	2.42e-08	41.30	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9RZK7	1.30e-07	41.22	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of MC05g_new0396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g_new0396.1	MC05g_new0396.1	mRNA