MC05g1583 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g1583
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC05: 19567425 .. 19567613 (-)
RNA-Seq Expression	MC05g1583
Synteny	MC05g1583

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTGAGTTCCGTGGCGTTCGATAAGTCGATCTCGACCAAGTTCGAACAATTCATAGACAAACTCAGCAATCCTGCAGCCGAAAACAATTTAGACCTTGAAAGGTCGACGGAACGAAGCTTGGAATTGCACGCCTTAGCGACGATGGCCAAGGAGGCGTCAGTGACTCGAGGGTTGAGGGAAAAATCA

mRNA sequence

TCTCTGAGTTCCGTGGCGTTCGATAAGTCGATCTCGACCAAGTTCGAACAATTCATAGACAAACTCAGCAATCCTGCAGCCGAAAACAATTTAGACCTTGAAAGGTCGACGGAACGAAGCTTGGAATTGCACGCCTTAGCGACGATGGCCAAGGAGGCGTCAGTGACTCGAGGGTTGAGGGAAAAATCA

Coding sequence (CDS)

TCTCTGAGTTCCGTGGCGTTCGATAAGTCGATCTCGACCAAGTTCGAACAATTCATAGACAAACTCAGCAATCCTGCAGCCGAAAACAATTTAGACCTTGAAAGGTCGACGGAACGAAGCTTGGAATTGCACGCCTTAGCGACGATGGCCAAGGAGGCGTCAGTGACTCGAGGGTTGAGGGAAAAATCA

Protein sequence

SLSSVAFDKSISTKFEQFIDKLSNPAAENNLDLERSTERSLELHALATMAKEASVTRGLREKS

Homology

[Close]

BLAST of MC05g1583 vs. NCBI nr
Match: CAA2614902.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 67.0 bits (162), Expect = 2.20e-11
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 1   SLSSVAFDKSISTKFEQFIDKLSNPAAENNLDLERSTERSLELHALATMAKEASVTRGLR 60
           SLSSVAFDKSIST  EQ + +LS+P    +LD +RS ERS E    AT+A++ASVTRG R
Sbjct: 121 SLSSVAFDKSISTNEEQLVTRLSSPTWVKDLDFDRSMERSDEPRDRATVARQASVTRGQR 180

Query: 61  EKS 63
           E+S
Sbjct: 181 ERS 183

[Close]

BLAST of MC05g1583 vs. NCBI nr
Match: CAA7389332.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 67.0 bits (162), Expect = 2.50e-11
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 1   SLSSVAFDKSISTKFEQFIDKLSNPAAENNLDLERSTERSLELHALATMAKEASVTRGLR 60
           SLSSVAFDKSIST  EQ + +LS+P    +LD +RS ERS E    AT+A++ASVTRG R
Sbjct: 121 SLSSVAFDKSISTNEEQLVTRLSSPTWVKDLDFDRSMERSDEPRDRATVARQASVTRGQR 180

Query: 61  EKS 63
           E+S
Sbjct: 181 ERS 183

[Close]

BLAST of MC05g1583 vs. NCBI nr
Match: TQD82128.1 (hypothetical protein C1H46_032323 [Malus baccata])

HSP 1 Score: 51.2 bits (121), Expect = 1.40e-06
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 1  SLSSVAFDKSISTKFEQFIDKLSNPAAENNLDLERSTERSLELHA 45
          SLSSVAFD+SIST+F Q   KLSNP  +   D ERS ER L+L A
Sbjct: 13 SLSSVAFDRSISTRFLQLAAKLSNPVPKKQFDRERSIERWLDLQA 57

[Close]

BLAST of MC05g1583 vs. ExPASy TrEMBL
Match: A0A7I8IAI5 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_01001269 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.07e-11
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 1   SLSSVAFDKSISTKFEQFIDKLSNPAAENNLDLERSTERSLELHALATMAKEASVTRGLR 60
           SLSSVAFDKSIST  EQ + +LS+P    +LD +RS ERS E    AT+A++ASVTRG R
Sbjct: 121 SLSSVAFDKSISTNEEQLVTRLSSPTWVKDLDFDRSMERSDEPRDRATVARQASVTRGQR 180

Query: 61  EKS 63
           E+S
Sbjct: 181 ERS 183

[Close]

BLAST of MC05g1583 vs. ExPASy TrEMBL
Match: A0A7I8K0T8 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_01001402 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.21e-11
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 1   SLSSVAFDKSISTKFEQFIDKLSNPAAENNLDLERSTERSLELHALATMAKEASVTRGLR 60
           SLSSVAFDKSIST  EQ + +LS+P    +LD +RS ERS E    AT+A++ASVTRG R
Sbjct: 121 SLSSVAFDKSISTNEEQLVTRLSSPTWVKDLDFDRSMERSDEPRDRATVARQASVTRGQR 180

Query: 61  EKS 63
           E+S
Sbjct: 181 ERS 183

[Close]

BLAST of MC05g1583 vs. ExPASy TrEMBL
Match: A0A540L6M5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_032323 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.79e-07
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 1  SLSSVAFDKSISTKFEQFIDKLSNPAAENNLDLERSTERSLELHA 45
          SLSSVAFD+SIST+F Q   KLSNP  +   D ERS ER L+L A
Sbjct: 13 SLSSVAFDRSISTRFLQLAAKLSNPVPKKQFDRERSIERWLDLQA 57

The following BLAST results are available for this feature:

BLAST of MC05g1583 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g1583 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA2614902.1	2.20e-11	60.32	unnamed protein product [Spirodela intermedia]	[more]
CAA7389332.1	2.50e-11	60.32	unnamed protein product [Spirodela intermedia]	[more]
TQD82128.1	1.40e-06	62.22	hypothetical protein C1H46_032323 [Malus baccata]	[more]

BLAST of MC05g1583 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7I8IAI5	1.07e-11	60.32	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_01001269 PE=4 SV...	[more]
A0A7I8K0T8	1.21e-11	60.32	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_01001402 PE=4 SV...	[more]
A0A540L6M5	6.79e-07	62.22	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_032323 PE=4 SV=1	[more]

BLAST of MC05g1583 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g1583.1	MC05g1583.1	mRNA