MC05g1037 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g1037
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	MC05: 14053043 .. 14053408 (-)
RNA-Seq Expression	MC05g1037
Synteny	MC05g1037

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATTAATCCAAACTGGTGTGTTTTATGCAATTGCTCTAGTGAAATAAATGGATCATCTATTTTTGCATCACCCCTTTTTGGCATCTCTTTGGCATTGTTTGGTGTACAGTTTCCAAATTTCACTTGTCTTTCCCCATTGTATTGACACTTTCAAATCACAGGGTGTATTTCCAAGTCCAGTAACTGCAGACGAAATATTTTGCGGTATAATACTATGAGAGCTATTCATTGGAACATTTGGTTGGAACGAAACAACCGCACTTTCTCGGACATCTCAAGGACAGTTGCTTCGCTTTGGGAGGACATCATCATACATATTTCGTCATGGTTTTCCAAATCCAATCTCTTTTGTAATTATGAT

mRNA sequence

ATGCATATTAATCCAAACTGGTGTGTTTTATGCAATTGCTCTAGTGAAATGGATCATCTATTTTTGCATCACCCCTTTTTGGCATCTCTTTGGCATTGTTTGGTGTACAGTTTCCAAATTTCACTTGTCTTTCCCCATTGTATTGACACTTTCAAATCACAGGGTGTATTTCCAAGTCCAGTAACTCGAAATATTTTGCGGTATAATACTATGAGAGCTATTCATTGGAACATTTGGTTGGAACGAAACAACCGCACTTTCTCGGACATCTCAAGGACAGTTGCTTCGCTTTGGGAGGACATCATCATACATATTTCGTCATGGTTTTCCAAATCCAATCTCTTTTGTAATTATGAT

Coding sequence (CDS)

ATGCATATTAATCCAAACTGGTGTGTTTTATGCAATTGCTCTAGTGAAATGGATCATCTATTTTTGCATCACCCCTTTTTGGCATCTCTTTGGCATTGTTTGGTGTACAGTTTCCAAATTTCACTTGTCTTTCCCCATTGTATTGACACTTTCAAATCACAGGGTGTATTTCCAAGTCCAGTAACTCGAAATATTTTGCGGTATAATACTATGAGAGCTATTCATTGGAACATTTGGTTGGAACGAAACAACCGCACTTTCTCGGACATCTCAAGGACAGTTGCTTCGCTTTGGGAGGACATCATCATACATATTTCGTCATGGTTTTCCAAATCCAATCTCTTTTGTAATTATGAT

Protein sequence

MHINPNWCVLCNCSSEMDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPVTRNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWEDIIIHISSWFSKSNLFCNYD

Homology

[Close]

BLAST of MC05g1037 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.22e-16
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 3   INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPS 62
           ++PNWC +CN S E ++HLF+H P+   LW       Q  L +    +  KS  Q +   
Sbjct: 813 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWS----KAQALLKWNSTPNDVKSLAQNICSL 872

Query: 63  PVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWEDIIIHISSWFSKSNLFCN 119
            +   + ++ +NT+  + W IWLERNNR F    +    LWEDI+     W  KS LF N
Sbjct: 873 NIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSN 930

[Close]

BLAST of MC05g1037 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.23e-16
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 3    INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPS 62
            ++PNWC +CN S E ++HLF+H P+   LW       Q  L +    +  KS  Q +   
Sbjct: 907  LSPNWCYMCNKSQEDINHLFIHCPYSQQLWS----KAQALLKWNSTPNDVKSLAQNICSL 966

Query: 63   PVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWEDIIIHISSWFSKSNLFCN 119
             +   + ++ +NT+  + W IWLERNNR F    +    LWEDI+     W  KS LF N
Sbjct: 967  NIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSN 1024

[Close]

BLAST of MC05g1037 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 7.96e-16
Identity = 47/124 (37.90%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 3    INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPV 62
            ++PNWC +CN S E ++HLF+H P+   LW     S   +L+  +   T   Q +  +  
Sbjct: 1015 LSPNWCYMCNKSQEDINHLFIHCPYSQQLW-----SKAKALLNWNSTPT-DVQSLIQNIC 1074

Query: 63   TRNI------LRYNTMRAIHWNIWLERNNRTFSDISRTVASLWEDIIIHISSWFSKSNLF 119
            + NI      + +NT   I W IWLERNNR F    +    LWED +  I  W  KS LF
Sbjct: 1075 SLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLF 1132

[Close]

BLAST of MC05g1037 vs. NCBI nr
Match: TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.81e-15
Identity = 48/123 (39.02%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 3    INPNWCVLCNCSSEMD-HLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPV 62
            + PNWCVLC   SE   HLFLH   +  LW  L      SL F    D F++   F   +
Sbjct: 1653 LQPNWCVLCKKKSETGAHLFLHCDLVKPLWSLL----HRSLNFAPISDDFEAMFSFFLSL 1712

Query: 63   TRNILRYNT----MRAIHWNIWLERNNRTFSDIS--RTVASLWEDIIIHISSWFSKSNLF 118
             +++ ++      M AI W IW ERNNR F  +S  +++A+LWED  I I +W+S+   F
Sbjct: 1713 NQSLPKHKVVFCGMIAILWRIWTERNNRIFDTLSYQKSIANLWEDCKILIGNWYSRDPTF 1771

[Close]

BLAST of MC05g1037 vs. NCBI nr
Match: TYK02997.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 3.29e-15
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 5   PNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFK---SQGVFPSP 64
           P+WCV+C  + E   HLF+  PF  S+W  +      ++   +C+   +   S   +   
Sbjct: 172 PSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNV---NCLSPKELCFSMCSWNQK 231

Query: 65  VTRNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWEDIIIHISSWFSKSNLFCNY 118
             +N++ +NT  +  WNIWLERN R F+   +T A +WEDI      W S+S+LF NY
Sbjct: 232 TKKNVILFNTYASALWNIWLERNARIFNGKEKTAAEIWEDIKALAGLWTSRSSLFSNY 286

[Close]

BLAST of MC05g1037 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.90e-17
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 3   INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPS 62
           ++PNWC +CN S E ++HLF+H P+   LW       Q  L +    +  KS  Q +   
Sbjct: 813 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWS----KAQALLKWNSTPNDVKSLAQNICSL 872

Query: 63  PVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWEDIIIHISSWFSKSNLFCN 119
            +   + ++ +NT+  + W IWLERNNR F    +    LWEDI+     W  KS LF N
Sbjct: 873 NIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSN 930

[Close]

BLAST of MC05g1037 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.94e-17
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 3    INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKS--QGVFPS 62
            ++PNWC +CN S E ++HLF+H P+   LW       Q  L +    +  KS  Q +   
Sbjct: 907  LSPNWCYMCNKSQEDINHLFIHCPYSQQLWS----KAQALLKWNSTPNDVKSLAQNICSL 966

Query: 63   PVT--RNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWEDIIIHISSWFSKSNLFCN 119
             +   + ++ +NT+  + W IWLERNNR F    +    LWEDI+     W  KS LF N
Sbjct: 967  NIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSN 1024

[Close]

BLAST of MC05g1037 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.85e-16
Identity = 47/124 (37.90%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 3    INPNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPV 62
            ++PNWC +CN S E ++HLF+H P+   LW     S   +L+  +   T   Q +  +  
Sbjct: 1015 LSPNWCYMCNKSQEDINHLFIHCPYSQQLW-----SKAKALLNWNSTPT-DVQSLIQNIC 1074

Query: 63   TRNI------LRYNTMRAIHWNIWLERNNRTFSDISRTVASLWEDIIIHISSWFSKSNLF 119
            + NI      + +NT   I W IWLERNNR F    +    LWED +  I  W  KS LF
Sbjct: 1075 SLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLF 1132

[Close]

BLAST of MC05g1037 vs. ExPASy TrEMBL
Match: A0A5D3BL61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001020 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.36e-15
Identity = 48/123 (39.02%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 3    INPNWCVLCNCSSEMD-HLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFKSQGVFPSPV 62
            + PNWCVLC   SE   HLFLH   +  LW  L      SL F    D F++   F   +
Sbjct: 1653 LQPNWCVLCKKKSETGAHLFLHCDLVKPLWSLL----HRSLNFAPISDDFEAMFSFFLSL 1712

Query: 63   TRNILRYNT----MRAIHWNIWLERNNRTFSDIS--RTVASLWEDIIIHISSWFSKSNLF 118
             +++ ++      M AI W IW ERNNR F  +S  +++A+LWED  I I +W+S+   F
Sbjct: 1713 NQSLPKHKVVFCGMIAILWRIWTERNNRIFDTLSYQKSIANLWEDCKILIGNWYSRDPTF 1771

[Close]

BLAST of MC05g1037 vs. ExPASy TrEMBL
Match: A0A5D3BU35 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00910 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.59e-15
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 5   PNWCVLCNCSSE-MDHLFLHHPFLASLWHCLVYSFQISLVFPHCIDTFK---SQGVFPSP 64
           P+WCV+C  + E   HLF+  PF  S+W  +      ++   +C+   +   S   +   
Sbjct: 172 PSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNV---NCLSPKELCFSMCSWNQK 231

Query: 65  VTRNILRYNTMRAIHWNIWLERNNRTFSDISRTVASLWEDIIIHISSWFSKSNLFCNY 118
             +N++ +NT  +  WNIWLERN R F+   +T A +WEDI      W S+S+LF NY
Sbjct: 232 TKKNVILFNTYASALWNIWLERNARIFNGKEKTAAEIWEDIKALAGLWTSRSSLFSNY 286

The following BLAST results are available for this feature:

BLAST of MC05g1037 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g1037 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	1.22e-16	36.89	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	1.23e-16	36.89	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	7.96e-16	37.90	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
TYK00493.1	2.81e-15	39.02	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK02997.1	3.29e-15	34.75	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of MC05g1037 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TR15	5.90e-17	36.89	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	5.94e-17	36.89	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	3.85e-16	37.90	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BL61	1.36e-15	39.02	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BU35	1.59e-15	34.75	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MC05g1037 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g1037.1	MC05g1037.1	mRNA