MC05g0408 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g0408
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	arabinogalactan peptide 20-like
Location	MC05: 3050468 .. 3050913 (-)
RNA-Seq Expression	MC05g0408
Synteny	MC05g0408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCCATTTCCACTTCTAGGGCTTTCTCCAGCCTTTTCACCGCCTTCGCCCTCATCTTCTTCATTGTATCGCCACTTGTTGACGCCCACTCCTCCGCCCCTGCTCCTGCTCCCGCTCCTGCAAGCGACGGTATCTAGATCCCACCTCCTCCTTTTGATTTCTGTTTTCTAATTTTGTCAATTGCATTTTTGTTTTTCTTCTCTCTTTTGGGGATTTCTTCGATGTTTACGAAGAAAAATAGTCCTTCCGATTAGGGATTTCTGTTTTAGAAGCCCTTGCTCTTGTAGCACAAGTAGCCAGTGAAATTCGTTGACAAATGTGTGTGAAAACAGGGACCTCCATAGACCAAGGGATCGCGTACGTGCTGATGCTTCTGGCCTTGGTTCTCACATACCTCATCCACCCTCTCGATGCATCTTCCTACAACTTCTTTCTCAAT

mRNA sequence

ATGGCGTCCTCCATTTCCACTTCTAGGGCTTTCTCCAGCCTTTTCACCGCCTTCGCCCTCATCTTCTTCATTGTATCGCCACTTGTTGACGCCCACTCCTCCGCCCCTGCTCCTGCTCCCGCTCCTGCAAGCGACGGGACCTCCATAGACCAAGGGATCGCGTACGTGCTGATGCTTCTGGCCTTGGTTCTCACATACCTCATCCACCCTCTCGATGCATCTTCCTACAACTTCTTTCTCAAT

Coding sequence (CDS)

ATGGCGTCCTCCATTTCCACTTCTAGGGCTTTCTCCAGCCTTTTCACCGCCTTCGCCCTCATCTTCTTCATTGTATCGCCACTTGTTGACGCCCACTCCTCCGCCCCTGCTCCTGCTCCCGCTCCTGCAAGCGACGGGACCTCCATAGACCAAGGGATCGCGTACGTGCTGATGCTTCTGGCCTTGGTTCTCACATACCTCATCCACCCTCTCGATGCATCTTCCTACAACTTCTTTCTCAAT

Protein sequence

MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDASSYNFFLN

Homology

[Close]

BLAST of MC05g0408 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-14
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 8  SRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYL 67
          SR   ++   FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYL
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSL--APAPSPTSDGTSIDQGIAYLLMVVALVLTYL 62

Query: 68 IHPLDA--SSYNFF 80
          IHPLDA  SSY FF
Sbjct: 63 IHPLDASSSSYTFF 74

[Close]

BLAST of MC05g0408 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.8e-14
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 15 FTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDA- 74
          F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA 
Sbjct: 10 FALFSFVFAVILSLAGAQSL--APAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 69

Query: 75 SSYNFF 80
          SSY+FF
Sbjct: 70 SSYSFF 73

[Close]

BLAST of MC05g0408 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.9e-12
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 5  ISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVL 64
          +S SR F  + T  ++IF I+ P+  AH+ + APAPAP SDGT+IDQGIAYVLML+ALVL
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPM--AHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVL 60

Query: 65 TYLIH 70
          TYLIH
Sbjct: 61 TYLIH 63

[Close]

BLAST of MC05g0408 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.2e-10
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 14 LFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIH 70
          +   F +I  I+ P+  +HSS  +PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 10 ILAVFVIISVILLPIAQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of MC05g0408 vs. NCBI nr
Match: XP_022147463.1 (arabinogalactan peptide 20-like [Momordica charantia])

HSP 1 Score: 150 bits (378), Expect = 2.51e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLL 60
          MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLL
Sbjct: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLL 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 81
          ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 ALVLTYLIHPLDASSYNFFLN 81

[Close]

BLAST of MC05g0408 vs. NCBI nr
Match: XP_023528757.1 (arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo] >KAG7019041.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (340), Expect = 1.57e-39
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLL 60
          MASS STSRAFS LFT F LI FI+SPLVDAHSS PAPAPAPASDGTSIDQG+AYVLML+
Sbjct: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 81
          ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 ALVLTYLIHPLDASSYNFFLN 81

[Close]

BLAST of MC05g0408 vs. NCBI nr
Match: XP_022924337.1 (arabinogalactan peptide 16-like [Cucurbita moschata] >KAG6582645.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132 bits (331), Expect = 3.94e-38
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSS--APAPAPAPASDGTSIDQGIAYVLM 60
          MASS STSRAFS LFT F LI FI+SPLVDAHSS  APAPAPAPASDGTSIDQG+AYVLM
Sbjct: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPAPASDGTSIDQGVAYVLM 60

Query: 61 LLALVLTYLIHPLDASSYNFFLN 81
          L+ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 LVALVLTYLIHPLDASSYNFFLN 83

[Close]

BLAST of MC05g0408 vs. NCBI nr
Match: XP_038905636.1 (arabinogalactan protein 41-like [Benincasa hispida])

HSP 1 Score: 125 bits (314), Expect = 1.34e-35
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLL 60
          M SS STSRAFS LFT FALIFFI+SPLVDA   APAPAPAPASDGTSIDQGIAYVLML+
Sbjct: 1  MESSNSTSRAFSGLFTFFALIFFILSPLVDA---APAPAPAPASDGTSIDQGIAYVLMLV 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 81
          ALVLTYLIHPLDASSY+FFLN
Sbjct: 61 ALVLTYLIHPLDASSYSFFLN 78

[Close]

BLAST of MC05g0408 vs. NCBI nr
Match: XP_023538848.1 (arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125 bits (314), Expect = 1.50e-35
Identity = 68/79 (86.08%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 3  SSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLAL 62
          SS ST  AFS  FT FALIFFI+SPLV AHSSA APAPAPASDGTSIDQGIAYVLML+AL
Sbjct: 4  SSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMAL 63

Query: 63 VLTYLIHPLDASSYNFFLN 81
          VLTYLIHPLDASSY FFLN
Sbjct: 64 VLTYLIHPLDASSYQFFLN 82

[Close]

BLAST of MC05g0408 vs. ExPASy TrEMBL
Match: A0A6J1D1D7 (arabinogalactan peptide 20-like OS=Momordica charantia OX=3673 GN=LOC111016381 PE=4 SV=1)

HSP 1 Score: 150 bits (378), Expect = 1.21e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLL 60
          MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLL
Sbjct: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLL 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 81
          ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 ALVLTYLIHPLDASSYNFFLN 81

[Close]

BLAST of MC05g0408 vs. ExPASy TrEMBL
Match: A0A6J1E8M6 (arabinogalactan peptide 16-like OS=Cucurbita moschata OX=3662 GN=LOC111431859 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 1.91e-38
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSS--APAPAPAPASDGTSIDQGIAYVLM 60
          MASS STSRAFS LFT F LI FI+SPLVDAHSS  APAPAPAPASDGTSIDQG+AYVLM
Sbjct: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPAPASDGTSIDQGVAYVLM 60

Query: 61 LLALVLTYLIHPLDASSYNFFLN 81
          L+ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 LVALVLTYLIHPLDASSYNFFLN 83

[Close]

BLAST of MC05g0408 vs. ExPASy TrEMBL
Match: A0A6J1IQM6 (arabinogalactan peptide 20-like OS=Cucurbita maxima OX=3661 GN=LOC111479127 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 1.51e-35
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSS--APAPAPAPASDGTSIDQGIAYVLM 60
          MASS ST RAFS LFT F LI FI+SPL+DAHSS  +PAPAPAPASDGTSIDQG+AYVLM
Sbjct: 1  MASSNSTFRAFSGLFTFFTLILFILSPLIDAHSSVPSPAPAPAPASDGTSIDQGVAYVLM 60

Query: 61 LLALVLTYLIHPLDASSYNFFLN 81
          L+ALVLTYLIHPLDASS NFFLN
Sbjct: 61 LVALVLTYLIHPLDASSNNFFLN 83

[Close]

BLAST of MC05g0408 vs. ExPASy TrEMBL
Match: A0A6J1IAU1 (arabinogalactan peptide 16-like OS=Cucurbita maxima OX=3661 GN=LOC111473327 PE=4 SV=1)

HSP 1 Score: 123 bits (308), Expect = 5.97e-35
Identity = 67/79 (84.81%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 3  SSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLAL 62
          SS ST  AFS  FT FALIFFI+ PLV AHSSA APAPAPASDGTSIDQGIAYVLML+AL
Sbjct: 4  SSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMAL 63

Query: 63 VLTYLIHPLDASSYNFFLN 81
          VLTYLIHPLDASSY FFLN
Sbjct: 64 VLTYLIHPLDASSYQFFLN 82

[Close]

BLAST of MC05g0408 vs. ExPASy TrEMBL
Match: A0A6J1F1F2 (arabinogalactan peptide 20-like OS=Cucurbita moschata OX=3662 GN=LOC111441255 PE=4 SV=1)

HSP 1 Score: 123 bits (308), Expect = 6.15e-35
Identity = 67/79 (84.81%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 3  SSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLAL 62
          SS ST  AFS  FT FALIFFI+SPLV AHSSA APAPAPASDGTSIDQGIAYVLML+AL
Sbjct: 5  SSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMAL 64

Query: 63 VLTYLIHPLDASSYNFFLN 81
          VLTYLIHPLDASSY FFL 
Sbjct: 65 VLTYLIHPLDASSYQFFLK 83

[Close]

BLAST of MC05g0408 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 80.1 bits (196), Expect = 9.0e-16
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 8  SRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYL 67
          SR   ++   FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYL
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSL--APAPSPTSDGTSIDQGIAYLLMVVALVLTYL 62

Query: 68 IHPLDA--SSYNFF 80
          IHPLDA  SSY FF
Sbjct: 63 IHPLDASSSSYTFF 74

[Close]

BLAST of MC05g0408 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-15
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 15 FTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIHPLDA- 74
          F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA 
Sbjct: 10 FALFSFVFAVILSLAGAQSL--APAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 69

Query: 75 SSYNFF 80
          SSY+FF
Sbjct: 70 SSYSFF 73

[Close]

BLAST of MC05g0408 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-13
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 5  ISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVL 64
          +S SR F  + T  ++IF I+ P+  AH+ + APAPAP SDGT+IDQGIAYVLML+ALVL
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPM--AHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVL 60

Query: 65 TYLIH 70
          TYLIH
Sbjct: 61 TYLIH 63

[Close]

BLAST of MC05g0408 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 64.3 bits (155), Expect = 5.1e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 14 LFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLALVLTYLIH 70
          +   F +I  I+ P+  +HSS  +PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 10 ILAVFVIISVILLPIAQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

The following BLAST results are available for this feature:

BLAST of MC05g0408 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M373	1.3e-14	62.16	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
O82337	4.8e-14	66.67	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q8L9T8	5.9e-12	63.08	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9FK16	7.2e-10	60.71	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]

BLAST of MC05g0408 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147463.1	2.51e-45	100.00	arabinogalactan peptide 20-like [Momordica charantia]	[more]
XP_023528757.1	1.57e-39	88.89	arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo] >KAG7019041.1 Arabi...	[more]
XP_022924337.1	3.94e-38	87.95	arabinogalactan peptide 16-like [Cucurbita moschata] >KAG6582645.1 Arabinogalact...	[more]
XP_038905636.1	1.34e-35	87.65	arabinogalactan protein 41-like [Benincasa hispida]	[more]
XP_023538848.1	1.50e-35	86.08	arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC05g0408 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D1D7	1.21e-45	100.00	arabinogalactan peptide 20-like OS=Momordica charantia OX=3673 GN=LOC111016381 P...	[more]
A0A6J1E8M6	1.91e-38	87.95	arabinogalactan peptide 16-like OS=Cucurbita moschata OX=3662 GN=LOC111431859 PE...	[more]
A0A6J1IQM6	1.51e-35	83.13	arabinogalactan peptide 20-like OS=Cucurbita maxima OX=3661 GN=LOC111479127 PE=4...	[more]
A0A6J1IAU1	5.97e-35	84.81	arabinogalactan peptide 16-like OS=Cucurbita maxima OX=3661 GN=LOC111473327 PE=4...	[more]
A0A6J1F1F2	6.15e-35	84.81	arabinogalactan peptide 20-like OS=Cucurbita moschata OX=3662 GN=LOC111441255 PE...	[more]

BLAST of MC05g0408 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61640.1	9.0e-16	62.16	arabinogalactan protein 20	[more]
AT2G46330.1	3.4e-15	66.67	arabinogalactan protein 16	[more]
AT5G24105.1	4.2e-13	63.08	arabinogalactan protein 41	[more]
AT5G53250.1	5.1e-11	60.71	arabinogalactan protein 22	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 35..69 e-value: 9.1E-19 score: 67.0
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 7..76
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 7..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g0408.1	MC05g0408.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane