MC05g0210 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g0210
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	cytochrome c oxidase-assembly factor COX23, mitochondrial
Location	MC05: 1511424 .. 1512677 (+)
RNA-Seq Expression	MC05g0210
Synteny	MC05g0210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACTACAAGGGATTCGGCACCGCCGTATGCCAGTGCTGCCAGGATTTCTGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTCAAATGTATGTTCGCGCTCTTACTCAATTTCCGTTTTTCTACGATTCTCCGTCAGACGTCAGAGTGTTAATTACGTATCCATTTGCACTTATTCTAGTGGTTTCCTTGAAGATTATTGCGTGCCGTGCATCAATTTTTTAAAGTATGTTCTGGTAGTTAAACTCGCGAATTTATTGTTAGTGATGATGAAATGGAACCTTTAATTTTCATGGCGATTCTCTAATCTCTGTTAGTTGAATAATTGGTTAGCCTGTTTTGTTTCCTTTTCTAGGGGTAGTGTTTCCATCTTCTACCTTAGTTCAATTAATGAAGATTGTTCAACTAGGGTATTCTTGATTGAACCGTCGTGACACTTCTTAGAGTGGATTTGTGTTGAGTTCACTTACTGTTCTAACAATGACAATAGCGGAGAAGGAACTTTTACTAGGATTTTCAAGCCCTTATCTTGATTCCCCGTTCCTTTGGGCAAAGGCCAAGTTCTAATTTAAAATGTCAAATTAGGAGTAACTTAGTTTGATGGTTCTTCCGCCCCAAAACTAATTTAGTTATCATTCAACATCTGCAATCTAATCCGATTTCATCTTGGCTTGTTCTTAGAGCTACATTCATAAGATAGTTTTAAGTGTTTTTGGAGGTCGTTGTGTGTATTTGTTTTCATTTAGGAGTAATGATAACACCACATATGGACAGAATTATGCCTTAGAATACATTTAAGGCAGAAGCCTCGAGCTGCGTCTTAAGTCAAGGACAAATGTTTTAGCCTCGACCTCAAGGTTTTTGCACTCTTATCTAAAACTTTAAGATTGTGCCTTATAGATTGTTTCTGAAAAGCATGCATAATTGTCGCTAGCTGATAAATCATGTGTAAAGTGAAATTTAATCTTGTATGGATGATGTAATTTGAATTTTTAAACGAATACAATCGTTGTTGATCTTCAATTTTTTACTATTGACTAGTTGGTATTCTGATTACTAATTTCACCAATTTGGAATTTTCTATTTTACTTCGTTCTATTTAGAATTTATGTCAGAAAACATTTTTTTGTCTTCTTATCATAGAAAGTCTCCTTTTGCAAATGCTTTAGGTCTTGAAGAACATAGCTCAGAGAAGAACAAATGTCAAGAACATTTTGACGTTTACAAGGAATGCAAGAAAAAGGAG

mRNA sequence

ATGGCTTCCACTACAAGGGATTCGGCACCGCCGTATGCCAGTGCTGCCAGGATTTCTGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAAGAACATAGCTCAGAGAAGAACAAATGTCAAGAACATTTTGACGTTTACAAGGAATGCAAGAAAAAGGAG

Coding sequence (CDS)

ATGGCTTCCACTACAAGGGATTCGGCACCGCCGTATGCCAGTGCTGCCAGGATTTCTGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAAGAACATAGCTCAGAGAAGAACAAATGTCAAGAACATTTTGACGTTTACAAGGAATGCAAGAAAAAGGAG

Protein sequence

MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE

Homology

[Close]

BLAST of MC05g0210 vs. NCBI nr
Match: XP_022147041.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia])

HSP 1 Score: 117 bits (294), Expect = 4.99e-33
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58
          MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE
Sbjct: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58

[Close]

BLAST of MC05g0210 vs. NCBI nr
Match: XP_038906947.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida])

HSP 1 Score: 109 bits (273), Expect = 8.00e-30
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58
          MAST+RD APPYASAARISDSPCYPQYSASLKCLEEH+SEK+KC+EHFDVYKECKKKE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHNSEKSKCREHFDVYKECKKKE 58

[Close]

BLAST of MC05g0210 vs. NCBI nr
Match: KAA0049122.1 (cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441.1 cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 9.36e-29
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58
          MAST+RD APPYASAARISDSPCYPQYSASLKCLE +SSEK+KCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKE 58

[Close]

BLAST of MC05g0210 vs. NCBI nr
Match: XP_022924627.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >KAG6582500.1 hypothetical protein SDJN03_22502, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018885.1 hypothetical protein SDJN02_20758 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106 bits (265), Expect = 1.33e-28
Identity = 51/58 (87.93%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58
          MAST+RD +PPY SAARISDSPC+PQYSASLKCLEEHSSE++KCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLKCLEEHSSERSKCQEHFDVYKECKKKE 58

[Close]

BLAST of MC05g0210 vs. NCBI nr
Match: XP_004133972.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN56698.1 hypothetical protein Csa_009870 [Cucumis sativus])

HSP 1 Score: 106 bits (264), Expect = 1.89e-28
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58
          MAST+RD  PPY SAARISDSPCYPQYSASLKCLE HSSEK+KCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKE 58

[Close]

BLAST of MC05g0210 vs. ExPASy TrEMBL
Match: A0A6J1D157 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016071 PE=4 SV=1)

HSP 1 Score: 117 bits (294), Expect = 2.41e-33
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58
          MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE
Sbjct: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58

[Close]

BLAST of MC05g0210 vs. ExPASy TrEMBL
Match: A0A5A7U004 (Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003050 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 4.53e-29
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58
          MAST+RD APPYASAARISDSPCYPQYSASLKCLE +SSEK+KCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKE 58

[Close]

BLAST of MC05g0210 vs. ExPASy TrEMBL
Match: A0A6J1E9H8 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111432060 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 6.44e-29
Identity = 51/58 (87.93%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58
          MAST+RD +PPY SAARISDSPC+PQYSASLKCLEEHSSE++KCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLKCLEEHSSERSKCQEHFDVYKECKKKE 58

[Close]

BLAST of MC05g0210 vs. ExPASy TrEMBL
Match: A0A0A0L4K5 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 9.15e-29
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58
          MAST+RD  PPY SAARISDSPCYPQYSASLKCLE HSSEK+KCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKE 58

[Close]

BLAST of MC05g0210 vs. ExPASy TrEMBL
Match: A0A6J1ITM4 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111479820 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 4.37e-27
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58
          MAST+RD  PPY SAARISDSPC+ QYSASLKCLEEHSSE++KCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPPPPYPSAARISDSPCFLQYSASLKCLEEHSSERSKCQEHFDVYKECKKKE 58

[Close]

BLAST of MC05g0210 vs. TAIR 10
Match: AT1G02160.1 (Cox19 family protein (CHCH motif) )

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-17
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 4  TTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 59
          +T+ +A  Y SAARISDSPCY QYSASLKCLEE  S+K+KCQ+HFDVYKECKKKE
Sbjct: 2  STKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56

[Close]

BLAST of MC05g0210 vs. TAIR 10
Match: AT1G02160.2 (Cox19 family protein (CHCH motif) )

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-17
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 4  TTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 59
          +T+ +A  Y SAARISDSPCY QYSASLKCLEE  S+K+KCQ+HFDVYKECKKKE
Sbjct: 2  STKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56

The following BLAST results are available for this feature:

BLAST of MC05g0210 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g0210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147041.1	4.99e-33	100.00	cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia]	[more]
XP_038906947.1	8.00e-30	91.38	cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida]	[more]
KAA0049122.1	9.36e-29	91.38	cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441....	[more]
XP_022924627.1	1.33e-28	87.93	cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >...	[more]
XP_004133972.1	1.89e-28	89.66	cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN...	[more]

BLAST of MC05g0210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D157	2.41e-33	100.00	cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia...	[more]
A0A5A7U004	4.53e-29	91.38	Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1E9H8	6.44e-29	87.93	cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata ...	[more]
A0A0A0L4K5	9.15e-29	89.66	CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 S...	[more]
A0A6J1ITM4	4.37e-27	86.21	cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX...	[more]

BLAST of MC05g0210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02160.1	2.0e-17	76.36	Cox19 family protein (CHCH motif)	[more]
AT1G02160.2	2.0e-17	76.36	Cox19 family protein (CHCH motif)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 23..57 e-value: 1.5E-7 score: 31.4
None	No IPR available	PANTHER	PTHR48150	CYTOCHROME C OXIDASE-ASSEMBLY FACTOR COX23, MITOCHONDRIAL	coord: 3..58
None	No IPR available	PROSITE	PS51808	CHCH	coord: 20..58 score: 15.397009
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 21..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g0210.1	MC05g0210.1	mRNA