MC04g_new0417 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g_new0417
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationMC04: 16344014 .. 16354233 (+)
RNA-Seq ExpressionMC04g_new0417
SyntenyMC04g_new0417
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATTCAGAATTTGAAGGACTAAAAATGAAATAATTTTTAGAGTAAATTTTAAAATTGCAAGGACCAATATACAAATATAATTAGTGAGAAATGAAAATAAAGAAATACCAAATAAGGGGAGAGAGAGCAGAGAAGAGGGTCAACCATTGTCCAGAGTCTACAGCTTCTTGTTCAGATTCCAATCCGATTCAGAAGCTGAAACATGAGAAGAAATTATTTCCAAAGATCGCCACAACGTCGTTCGCCTCCCTCAACACAATAGCCTCCGTAAACTACTTCCCTCTCTTTTCTTTTTTCTTCTCTTTCTTCTTACATTTATATTGCAAATCTGAACACTACTTATTTCCAAGGGTTGATTATTTCCTGTTTGTTGCTTGATACAAAATGGTTTTGTGATCAAACTGACACATCAGCAAATTTACTTCCTTTTATTTTGATAGAAGTTTTACACCAAGCCTATTCTAACCTCAGCCTATTTACTATTTTTAGGTTTAGTACATGGGTTTGCCTTTGTATGTAGTTTTTACTGAACTGGAAGGTTATAGTGAGGCCATAAAATTTACAGAAGCTTTTTGCTCTATTCTTGTTTTTGGTATGTGAGCAGAGGGCGTTTTCTTCTTGAGTTGTTTTTTAATTAATGTTTGAGATATTAATTGAAGAGTGGATGTATGGTAGAACCACTATAAATCCATTGTGTCGTTTCTTACTCCATTTTCTTCATTTTTCTTGTATGAAAGTTTGATATCACAACCAGGTTAGGTCGGATTTCCTACTTATCGATGATATTTGAAGTTGTTCGTTGCTAAGATCTTTTTCTGACTATTTAATATGGCCATGAAATCGAAATATTTTCACATTTATTGTTGATATCTGAAGTTGTTGTTGCTGGGTTTCTTGTTATTTTGTGAAATTAGTGCTGTGGTTGTGTAAATCCGACTTTAGTTTATGGAGGAAGAAAATGAGTGCACTATTGGTTCATCAAAAAGTCGCAAAAGCCATGGATGAGCCAGAAACCTTACTGGAAACACTTACTGAAGCAAGCCATGGATGAGCCAGAAACCTTACTGGAAACACTTACTGAAGCTAACAGATTTGAAATGGATGAAATAGCCTTTAGTTTGATTATCCTATATTTAGAGGATAATGTTCTTTGTCAAATCGATGAGGAGGATATTGCTGCAAAACTATGGGCTATGTTAGAAAATTTGTTCATTAGTAAGTCGGAGCCTAATAAAATTTATCTTAAGGAGTGGTTCTTTGGATTCAGGATGGATACTTCTAAGAGCTTGGATGATAACTTGGATGGACTTAACAAGATTTGCCTTGAATTTGCAAGTATAGGGGAGAAAATGTCAAATGAAAACCAAGCAGTGATATTGCTAAATTCATTACTTGAGAGCTACAAGGAAATTAAGTCAGCGATTAAATATGGTAGGGATTCATTAACTTTAGACTTAGTTCTGATCAAAAGATCCGGAAATTAAATCAGAAAAGAAAGATGCAAAAGTTCTTTTGACTCGTGGAAGAACATAACATAAAAATACAAGTCAAGGTAAACACGGTGGAAAATCTAGATCGAAATCAAGAGGAAAGGTTAAGAAATGTTGTTGTTGTCACAAAGAAGGACACATAAAACGATATTATTATATGTTGAAAGCTAAAATAAAGCAAGGTAACGTGCAGAGAAAAAAGAAGAAGGTAGTTCAGCAAACATACATGATAGTTATAATCAACTGAGGTTCTAGCAGTCTCAGATTATCGTTGTGAAGAGGAGTGGATTTTGGATTCTAGATGTTCCTTTCACACAAATCCTCATAGAGATTATTTCTAAGACTTTAGTGAATATGAAGGGGAAAACATTCTGATGGGAAATGATCAGAAGTGTAATATCAAGAGAATAGGATCTTTGAGGTTAAGGTTAGCTGATGGTATTGAAAAACTTCTTACGTTAGTGAGGTATATGCCTGGATTCAAGAGAAATCTCATCTCTCTTGGTACTTTGGATAAGGTCGGTGTTTTGAAAGTTTATAAAGGTTCGCTGCTAAAATTAAAAGGAGTTCTCAAGAATGGGTTATATGTTCTTCAAGGATGAATGATCATAGACTTTGTAAATGCAGTCATTGATTCAAAGTTTCAGAGGTCATCCCTATGGCATAAAAGATTGTGTCATGTTAGTGAAAGAGGTTTGAAAGCAACTTAAAAAAATAGAGTTGTTGGGTAAAGATAAAATTGGTGATCTTCTTTGATACGTGACAACCCAAGCATATTGAGCTACTCGAACCACAAGCCACTTGAATCCAATCGTATAGTTGGTTCAACCCGAAAGGCTAAGAGTTAGAGGGATTACCTTTGCAGTCGGTTACCTTAAACAGACAGAATACTCACTATGCTTGAGGCTAGAAACACTTCACGAGTTTGATGACCAATCAAAATCCGAGGGTAAAAATAAAGATTCCTAAGTTCAACCACACAAAGGAATCGATATTTTGGGGGGAGGGGGGCGGGGTTTGCACACGGTAAGGGAAAAACTCTCAAGCTTTTATTCAATTCAACATTCAAAAGATGCCTCAACATGGGGGGGGGGGGTACACGCTTATATATAGGCTAACGCCCATGACCTTTTAAGGAAAAATAACAAAATTGAAAATAAAATAAAAATTGATAAATTCCTAAAAAGTGCTAAATTTGCCTAAGATGAATTTAAAAATTGATAAATCAAAAACAAATCCCACAAAATAAACTAGGAAAATAAGAAGGAAATATTTTCCTTAAGTGGGATTGAGTGGACGGCAAGGCAAGGCTAGGGGAGAGCGTTGGCGCGTGCGGGAGTAGGGTTGGCGCTGGTAGGTGAGCGCATGGGCAGCGGTGCAAGGCATTGGGCGCTGATGGGTGTGCAGGGACGTGCAGACGCTGGGTTGGGTGCTGATGGCCTGCAGTGGCGCGCGGTTGCTTGGGGAAATGAGGCTCGCGGACAAGTAGGGGTAGTGCACATAGGCGCTGGGCAGACAATGGGCGCGCGGGTGTTGGGGTAGGCGTGGGCGTAAGGCGTCTGCAGCAGACAGTGGTGTGCGAGCGCTGGGGACAGACGTAGGCGCGCGGGCATGTGTGGCAGATAGGAGCGCACAGGGGTCGTTCCTTGTGAGGTTAGCGGGGCTAAGACGAGTGCGGCAGGGGGCACATTGTGAGGTTCTTGTGGCATGGTAGCGCGCACAGTGGCGTGCGCCTGACTGTGCGTGCGTGCGGGTGGCCTCTCGATGGGTTTATCCTTTAAGTGGGGCCGCTCGCTTGGTTTCTCTTCCCTTCCATGCTTCCTCTTGACCCTAGTACGTCCTTCATTGACCTTCAAAATAATAAAAATTTGTTGATGGGTCAAATATGATCGTATCATCTCTTCCTTCTGGAATTGGATTCGTCCTCGAATCAAGTTGTTTACCTACATCCAAACGAAGTAAGTTAATCCAATGATAAGCATCTATAGTAGGACTATTACCTTGATGAAGTTGAAAAACTTCATTCTCCTTTTTCTTCTCAAAGATCTCCACTTGATTGTCATGTTGGTTCTCCTCATATGGCTCGGCCTCTTGATGTGTTTGAGATCCTTAAGTGGGCAGCTCAAAAGAACTTCCTTGCTGCTCTCCTTCTTCTTCTTCAATTCTCCTCTCCAAGTATGGCATGACCTCGGGTATCGTCTCCTCAATATCCTGTAAAAACTCAACACAAGCACTAGGCAAAGTATTTCTTCTTTATTGAGTTAGGAGATCATTACCTTCATGTAGGTATAGAAGAAGCAATTGTGTAGCACATAGAACTCGCTTTATCTAGTCTCTTCTAGCCATGAGGGTCATGACTTTCTCATTGTTTTTAGAGGCTTTTCCTTTCTTTTTAATTTGAAGGTCAACAACTTCCTTTTCTTCTTGGCCTCCAACCTTCTTTCTTCCCATTTTAGTTCATCAATACGTACTTCTCTTGGAGAAAGAGGTACAACTGAGATTTTCTTACCTTGATGCTCAAAGGAATATTTATTAAGAATACCATCAAAACTCACATTTTTGTCAAATTGCCACGGTCTCCCTAGTAAGCAATCACTAGCATGCATAGGTACAACATCAAAAATGACCTCGTCCTTGTACCTACTTATGTTGAATGGAACTTGAACTTGCTTTTGGACCTTCACATCCCCACTATTATTCAACCATTGTAGGCTATAAGGCCGTGGGTGGGGTGTGGTGGCTAATTTCAACCTCTCCACTATGTCCTTACTAGCAACATTAGTACAACTCCCACTATCAATGATAACACTACATTTGGTGGAGTTTACTATGCACCTAGTATAAAATATGTTCTCTCTTTGTGTCTCTAAGGGCTTTTCCCTAAATTGCACATTGAGGTTCCTCCTAGCCACTAAGGCTATATCATTGGAATCCTCTTCTACTTCCTGTTCTTGACTACTTTCTTATTTTCTCTCCTCAACCTCTAATATCTCCTCCTAATCATCTCTAACTAGCTCTCCTTCTTTAAGTATCATGGCTCTTTGGTTAGGACAATTTTGGCTTATGTGGCCTACTCCACGACATTTAAAACATTTAATTTCACTAGTTCTAGTCTTGGAAATTTAAGGTTGGGTTTTGGACTTGGATGACTCTCCCTTCTCATAATTAGCTTTCGGTTTTGACTATAGGGATTTGCTCTCCACTTTGATACTAGTGGCCTTAGGGGTAGATTTGACATACCGTTTAGTCATTCGTTGGTTTTGTTCCTCTATTTTGATGGCGAGGTGTAAAAGTTCATGTCTTCATAATGTTGTAAATCAATTTTGTTAGCTATGTCCGGGTTAAGACCATCTAAGAATCGGGCCATGGTGGTCTCCACATCTTCCTCTAGTTGCAAACGGCTGATCAACATGTCTATCTCTTTGTAGTAGTCTTCAACTCCTTTGGTGCCTTGCTAGATTTTATTAAGTTTCCTTGAATTTGCTCTATGATAGTGTGTTGGCACGAATCTTCTCTTGATGAGTTCCTTGAATTCGATCCAAGAATCTACGGGTCCTTCGTCATTCCTCCTTATATGAGACATTACTTTATCCCACCAAGTTAGTGCATAATCCTTAAAATGGGTGATTGCGAGAATTACCTTCTTGCCATCATCACAGTTATGACATGCAAACACTAACTCAATTTCCTTCTCCCATGATTCAAACTATTCGGGTGTAGACTTTCCATGGAAGGTTGGGGATGTTCAACTTGATGCTCCCAAGGTAGTTTTCCCTTCTTGGCCTCTCTCGGTTGTGTTGGAATCTTCCTCTCCCTTGGCCAAGGTAGGCTCTTCTTTGAGGACCTATATCAAAAGGATCTTCATTGGCAAAATATTCATTTACAGAACCTACCTCTTCTTCCTTGGAACTGTCGGATATCTCTCTTGGACTCATTGATCTCCTTCTGTGTGGCAATTTTTGTGGCCGTTCCAATCCTTGAACACGTGTGTTCATCATTTATAAGGATTCGGCAAGATCTTCAAGTCGTTGTGTGAACCTTACAAAGGTTTTGATTTGAGCTTCCTTAAGTCTTTCATCGCTCACGTTGGCCTTGTCTCTTTCTTCTTGAGAATCATGAGACTTTCCTCTTGTTGCCATCGCTACACAAGTAGAGGCTAGTAATAATAAAGAAAACTCTTTCTCTCACTTCCTTACTTGACCTCTCGGCTTCCTCTCCTTTGGTAGGGTGGGTATTGGTGTGAATACCCTTTGGAGATGCTCACTTGAATGCTCGTGGCAAATTGGTCTTAGAACAAGTGAGTATAAGCCTACAAGCAACTTATACAAAGTACTTTTTTTTCTTTTGACTAAAGGTCAATGGTCTAAATGATACCAAAGACAATAATCAAATGGTGGCAAACAAATACCAAATGATATACCACAAGGAATTGATACAAATGATTCCAAATGATATTACAAGATGAATGAAGCAAGATATAAACAAGGATAGATAAAAGACAACCTTGAACCTAATGCTCTTGGTTCTAAGGACTCAACAACAATATGCAAAGTGATGTCAAAGCTAAACAAATAAAAAATATGCAATAAAAATCAATGAAATAAAAAATAAACTTTAAAAGATGTACAAAATCCTACTTATAGTGCAAACACATACAAAAGATTTTCTTACCAACAAAATAGTAACCTTCGCGGCAAGTAGGGTGACTTTGGGTGAGAGGTGCGTACTATGTACGGCTTGGATTGGGCTCCAGTGGCAAACTGAACTACAACGACTGTACTGAACGTATGTGGGCTGCCAAATGGTTTAGAAATCGTTTGGAGGGGGCTGCTCTCTCAAAGAAGTCTAGGGCTGGACAAAACAGAATCTCTCGGGTGGTCCAGTGGGCTTAGGCGACTGTCCTCCTTCTTTTGGGTTGTCCAAAATGGTCAAAATAATCCAAAAGTATTTTAAAATCAAATTATAAACAATATTAGGATTACTTGCCAAACATAATTTGATTTGGACTAGATTTGATGGCCCAAAGATTTTCTCCAAAATCGTCCAGCTTCAAATATGGAAAGTTTTCTGCCTGGATACCTTCTCTTCTAACACTGATAACTTTTGTTGCAGACCTCGGATGACTACAATCTTTATGTCTCTGGAAAGCTCTCTCAAATACCTTCAGTTTGACACCTGATTTGACTATAATCAATAAAAAGGTCAGAGATATATGAATGGTCAAAATTGGGACTCTGTTCTCTCAGCGGCTGCAGGATTTCCAGAAAAACAGTGTTTCTCGATAACTTCCAAACTTCAAATCGAAAATTATTGATTCTAGGTTCTCTGGAAAGCTAACTCAGAGATCTTTTGAATAATACTGATTTCACTTAATTTGGACTTTGGAGCAAAAAGATATGGATTTTTGAAGTCGGCTCTCGGTTTTGTGCTCTTTCAAGGTGTCTCTCAAATTTTCGGGTTCGAAGAAAAATTGATAACTTTGGCTATAGGACTCGGATTAAAGTGAAACTTGATTTGTTGGAAAGCTTTTGAGGTGCAGAACACAAACAAATAAGTTTTATACACTTTAAGCAATTTTCAAAATAAAAATTCTCATGCAATTATGATAGACAAAGTTGGCACGCGGAAGAATAAGAACAATGGATGAATTTTTTTGTAAAATTTTTTAATAAGGGAAAGTAAAGGCAAAGGCAAGAAATTTAAAGACAGAAAAATAACATATATCCTGGTCTAGAGCCTCAGCTCTGATACCAAATGATACGCGACAATCGAAGCGTATTGAGCTACTCGAGCCACACGCCATTTGGATCCAATCGTATAGTTTGTTCAACCCGAAAGGCTAAGAGTTAGAGGGATTATTTTGCAGTTGGTTACCTTGAGTAGACAGAATACTCACAATTCTCGAGGTCGAAAACACTCCACAACTTTGATGACCAATCAAACAAGCATGCTCTGAGTGTAATAATAAAGGTTCCTAAGTTCAACAACACAAAGGAATCAATATTTTGCCGGGGGGGGGGGGGGGGTTTGCACACGGAAAAAAAAAAACTATCAAGTTTTTATTCAACTCAACATTCAAAAGATACCTCAACATGGAGGGGGTACACGCCTATATACAAGCTAAAGCACATGACCTTTTAAGGAAAATAACAAAATTAAAAAGAAAATAAAAATTGATAAATTCCTAAAAAGTGCTAAACTTGCCTAAGATGAATTTAAAAATTGATAAATAAAAAAGAAATCTCACAAAATAAATTAGGAAAATAAGAAGGAAACCTTTTCTTTAAGTGGGATTGAATGGGTAGCAAGGCAAGGCTGCCGGGGGGGGGGGNGGTGCTGGCCACTGGCGTTGGGCGCTGACGGGCGTGCAGGGACGTGTGGGCACTGTGCTGGGTGCTGATGGCGTGTAGGGGCGAACGGTTGCTTGGGGAAATGAGGCAAGCGAACAGACAGGAGCGACACACATGGGCACTGGGTAGACAATGGGCGCGCGGGCGCTGGGGTAAGTGTGGGCGCGTGGCGTGTGCGGCAGACAGGGGCATGTAAACGTTGGGGGGTAGGCGTACGCATGCGGGCATGTGCGGCAGATAGAGGCGCATAGGGGTGTGGGGTAGGCGTAGGCGGTATGCGATGGGCGCATGGCAGGCAGCGCAGACAGGGATCGTGCACTGTGAGGTTCTCGCGGCATGGTAACGCCCGCACACGGGTGATATGCGCCTGGCTGTACGTGCGTGCGAGTGGCTTCTCGATGGGCTTGTCCTTGAAGTGGGGCCACTCGCTTGGTTTCTCTTCCCTTCCATGCTTCCTGTTGACCCTAGTAGGTCCTTTATTGGCCTTCAAAATGGTATAAATTTGTTGATGGGTCAAATGAAGTTTACTTCGTTTGGTGGGTCTTTCCTCAAGCTTCTCTTCATTGTTGGTGTACGTGGCATTTTGAAGTATTGGGTCAAATATGATCACATCATTCGTTTTTTTTTTTATCACAGTGTTCTTGGGAAGGCAGCGAAAGTTAAATTTAATTTAAACTGGAGGAATTATGGATTATATTCACTCAGATTTATGGGGGCCAGCTTGAGTTGCTTCACATGGAGGTGCAAAATATTTTTTGACCAAAGTTGATGACTACTCACACAAGGTGTGGACTCACTTGTTAAAAAAAAATGATGTTTATAAGGTGTTCAAAGATTAGAAAAAAAAACTCTTGAAAAACTATATATGGAGGAAAATTAAAGTAATTCAAACAGACAATGGATTAGAGTTCTTAAATGAGAATTTTAATTGTATGTGCATTGAATATGGGATTAAGAAGCATTTGACAGTGGCTTATACATCTCAGCAAAATAGTTTAGCTGTGAAGTTTAATAGAACTGTTCTTGAGCAGAGAACCGTTCTTGAGCATGTAAGGTGTATGTTGTCTAATGCAAACTACCAAAGGTGTTTTTAGGAGAAGCTGTAATACTGTTGTTTATATTATTAACAGAAGCTCGTCTTGGGCACTACAGATGAAGACTCAGAAAATATAGACAGAGAAACCCCTAAGTTGGATTACTTGCATGTGTTTGGTTATTCAACATTAGTTCATGTCAAGCATGATAAGTTAGCTCCAAGAGCTAAACGATGTATGTTCTTAGGCTACCATTCGAGTATAAAATGGTATAACTTTTGGTTGCTAGAACCGGTGAAGGAAAGTGTATCGCGAGTCGAAATGTTACTTTCTATAAAGCGGAAATGCCCTGGAAATATCAGTCCTGTGAGGATTTCAAAAAGGATAGGATTGTAACTATTCTTCTTTTGAAATTTTGACTGAACAATAAGGTACTTTAAGAACGTCTGAAACTTCAAGTGATGTAGGAACTTCAGGGTGTGGTTGTTAAACTACTGAGTATATTGAAATTTTTTCTTCTTCTGATCTTGTTGTTATTGATTTTGAACATACAAAAATTGATATTACTCAAGAGCAACAAAATGACCATCAACGTGGTTTAGTTGCTGATTATTAGTTAACCGGAGAAAGAGAAAAACAGGTAATTCAACCTCCTTTGAGATATGAAGCTGATATTACCGTGTATGATTTAAACTGTGAATAAAAATTGACTGATGTAGAACCCAATTATTATGAAGAGGCTGTTAATAGTGAAGAAAAAGATTTGTGGTTGGAAGCTATGGATAAACAGATGTCTTCACTATACAAGAAGGAAACTTGGGTATTGGTTGATAAGCATTTGTAGATTACAAATTGATTGATTGTCGTTGGCTTTCAGGATTAAACCCACTGTTAAGGGGAGAAACCTAGATATAAAGATAGACTTGTGACTAAAGGTTACACACAACAATATGGTGTTAATTATAATGAGATATTTTCTCTAGTGGTAAGACATACATCAATTCGAGTTCTTCTTACTTTAGTTAACTAGTTTAATCTTGAATTGGAACAGATGGACGTTACTACTACTTTTCTTCATGGAGACTTGGAAGAAAAGATTTATATGCACCAGCCCCCAAGTTATGTAATACTAGGTAGAGAGCATTAGGTTTGTTATCTTAAACGCTCTTTGTATGGTTTAAAACAATCGTCTCAACAGTGGAATAAGAGTTTTGATACCTTTATGATAAGAAGCTATTTTCGTAGAAGTGATTTTGATAGTTGTGTTTACATAAAAATAATATTCAATGATGTATCTACATATCTCTTGCTCTATGTAGATGATATGCTAATAGCTTTCCGTC

mRNA sequence

ATGAAAATAAAGAAATACCAAATAAGGGGAGAGAGAGCAGAGAAGAGGGTCAACCATTGTCCAGAGTCTACAGCTTCTTGTTCAGATTCCAATCCGATTCAGAAGCTGAAACATGAGAAGAAATTATTTCCAAAGATCGCCACAACGTCGTTCGCCTCCCTCAACACAATAGCCTCCATGGACGTTACTACTACTTTTCTTCATGGAGACTTGGAAGAAAAGATTTATATGCACCAGCCCCCAAGTTATGTAATACTAGGTAGAGAGCATTAG

Coding sequence (CDS)

ATGAAAATAAAGAAATACCAAATAAGGGGAGAGAGAGCAGAGAAGAGGGTCAACCATTGTCCAGAGTCTACAGCTTCTTGTTCAGATTCCAATCCGATTCAGAAGCTGAAACATGAGAAGAAATTATTTCCAAAGATCGCCACAACGTCGTTCGCCTCCCTCAACACAATAGCCTCCATGGACGTTACTACTACTTTTCTTCATGGAGACTTGGAAGAAAAGATTTATATGCACCAGCCCCCAAGTTATGTAATACTAGGTAGAGAGCATTAG

Protein sequence

MKIKKYQIRGERAEKRVNHCPESTASCSDSNPIQKLKHEKKLFPKIATTSFASLNTIASMDVTTTFLHGDLEEKIYMHQPPSYVILGREH
Homology
[Close]
BLAST of MC04g_new0417 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-04
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 0 

Query: 44  PKIATTSFASLNTIAS--------MDVTTTFLHGDLEEKIYMHQPPSYVILGREH 91
           P +  TS  ++ ++A+        +DV T FLHGDLEE+IYM QP  + + G++H
Sbjct: 897 PVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKH 951

[Close]
BLAST of MC04g_new0417 vs. NCBI nr
Match: WP_156113322.1 (hypothetical protein, partial [[Clostridium] innocuum])

HSP 1 Score: 52.0 bits (123), Expect = 3.23e-06
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 57 IASMDVTTTFLHGDLEEKIYMHQPPSYVILGRE 89
          I  MDV TTFLHGDLEE+IYM QP  Y++ G+E
Sbjct: 19 IEQMDVKTTFLHGDLEEEIYMSQPEHYIVKGKE 51

[Close]
BLAST of MC04g_new0417 vs. NCBI nr
Match: WP_144728160.1 (hypothetical protein, partial [Cobetia crustatorum] >TVU59856.1 hypothetical protein FQP86_17905, partial [Cobetia crustatorum])

HSP 1 Score: 52.0 bits (123), Expect = 1.37e-05
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 57 IASMDVTTTFLHGDLEEKIYMHQPPSYVILGREH 90
          I  +DV T FLHGDLEE+IYMHQP  + + G+EH
Sbjct: 52 IEQLDVKTVFLHGDLEEEIYMHQPEGFEVKGKEH 85

[Close]
BLAST of MC04g_new0417 vs. NCBI nr
Match: PKI67162.1 (hypothetical protein CRG98_012411 [Punica granatum])

HSP 1 Score: 51.6 bits (122), Expect = 1.44e-05
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 57  IASMDVTTTFLHGDLEEKIYMHQPPSYVILGREH 90
           +  MDV TTFL+GDLEE++YM QP  +V+LG EH
Sbjct: 101 VHQMDVKTTFLNGDLEEEVYMEQPEGFVLLGNEH 134

[Close]
BLAST of MC04g_new0417 vs. NCBI nr
Match: PKI37236.1 (hypothetical protein CRG98_042388 [Punica granatum])

HSP 1 Score: 52.4 bits (124), Expect = 2.20e-05
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 45  KIATTSFASLNT-IASMDVTTTFLHGDLEEKIYMHQPPSYVILGREH 90
           ++  T  ASLN  I  +DV T FLHGDLEE+IYM QP  + + G+EH
Sbjct: 273 RVVLTLVASLNLEIEQLDVKTVFLHGDLEEEIYMEQPEGFRVKGKEH 319

[Close]
BLAST of MC04g_new0417 vs. NCBI nr
Match: KAA0066633.1 (hypothetical protein E6C27_scaffold979G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 2.29e-05
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 57  IASMDVTTTFLHGDLEEKIYMHQPPSYVILGREH 90
           I  MDVTTTFLHG+LEE IYM QP  Y + G+EH
Sbjct: 353 IEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEH 386

[Close]
BLAST of MC04g_new0417 vs. ExPASy TrEMBL
Match: A0A558GSQ2 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Cobetia crustatorum OX=553385 GN=FQP86_17905 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.64e-06
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 57 IASMDVTTTFLHGDLEEKIYMHQPPSYVILGREH 90
          I  +DV T FLHGDLEE+IYMHQP  + + G+EH
Sbjct: 52 IEQLDVKTVFLHGDLEEEIYMHQPEGFEVKGKEH 85

[Close]
BLAST of MC04g_new0417 vs. ExPASy TrEMBL
Match: A0A2I0KF82 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_012411 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.99e-06
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 57  IASMDVTTTFLHGDLEEKIYMHQPPSYVILGREH 90
           +  MDV TTFL+GDLEE++YM QP  +V+LG EH
Sbjct: 101 VHQMDVKTTFLNGDLEEEVYMEQPEGFVLLGNEH 134

[Close]
BLAST of MC04g_new0417 vs. ExPASy TrEMBL
Match: A0A1J3E4H5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR19266_c16_g1_i1_g.62530 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.15e-06
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 57 IASMDVTTTFLHGDLEEKIYMHQPPSYVILGREH 90
          I  MDV T FLHGDLEE+IYM QP  +VI G+EH
Sbjct: 8  IYQMDVKTAFLHGDLEEEIYMKQPEGFVIPGQEH 41

[Close]
BLAST of MC04g_new0417 vs. ExPASy TrEMBL
Match: A0A2I0I184 (Integrase catalytic domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_042388 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.07e-05
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 45  KIATTSFASLNT-IASMDVTTTFLHGDLEEKIYMHQPPSYVILGREH 90
           ++  T  ASLN  I  +DV T FLHGDLEE+IYM QP  + + G+EH
Sbjct: 273 RVVLTLVASLNLEIEQLDVKTVFLHGDLEEEIYMEQPEGFRVKGKEH 319

[Close]
BLAST of MC04g_new0417 vs. ExPASy TrEMBL
Match: A0A5A7VF14 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold979G00520 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.11e-05
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 57  IASMDVTTTFLHGDLEEKIYMHQPPSYVILGREH 90
           I  MDVTTTFLHG+LEE IYM QP  Y + G+EH
Sbjct: 353 IEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEH 386

The following BLAST results are available for this feature:
BLAST of MC04g_new0417 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109781.0e-0440.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of MC04g_new0417 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_156113322.13.23e-0666.67hypothetical protein, partial [[Clostridium] innocuum][more]
WP_144728160.11.37e-0561.76hypothetical protein, partial [Cobetia crustatorum] >TVU59856.1 hypothetical pro... [more]
PKI67162.11.44e-0561.76hypothetical protein CRG98_012411 [Punica granatum][more]
PKI37236.12.20e-0553.19hypothetical protein CRG98_042388 [Punica granatum][more]
KAA0066633.12.29e-0567.65hypothetical protein E6C27_scaffold979G00520 [Cucumis melo var. makuwa][more]
BLAST of MC04g_new0417 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A558GSQ26.64e-0661.76Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Cob... [more]
A0A2I0KF826.99e-0661.76Reverse transcriptase Ty1/copia-type domain-containing protein OS=Punica granatu... [more]
A0A1J3E4H58.15e-0667.65Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Noccae... [more]
A0A2I0I1841.07e-0553.19Integrase catalytic domain-containing protein OS=Punica granatum OX=22663 GN=CRG... [more]
A0A5A7VF141.11e-0567.65Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MC04g_new0417 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g_new0417.1MC04g_new0417.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding