MC04g_new0364 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g_new0364
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007
Location	MC04: 13597200 .. 13599348 (-)
RNA-Seq Expression	MC04g_new0364
Synteny	MC04g_new0364

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTACCTTAAAAGCGTATCATGCTTATCAAGGAGACCAAAAACCAGAAGAAGAAATAATGGAGACAGTCCTTGGGAGAAGATCGAACTATATAATAGGAATGGGATATGGACCGAAGCCCACCAGAAATAAAGGATCATCATCAAAATATTCTGATGAATATGTGGAGTCATTAGAGTCTCGTCTTCAGAAGCATGAGGAAGAATTGGTAGCTCAACGAAAGGCGAACGAAGACCAACAAATGGCCACCCAAGAACAAATACAGAAAGCATTGGAGGCCCAAAGCCAGAAGTTCAACAGGAAACTTCTCAAAATGCAACAAATGTTTCTTTCGGGGAGAGGGATTTCATCGAATAGTAAGGTATGTCGTGAAATTAGTTTCTTGGTATTATGGTTATGTGCACAAGTGTTAAAACTTTACGTATGTTTTGAGAGTATGTCTTCTGGATTATGTTTGTCTGGAGTATGAGTTTGTGACGTTCGTGACAATTGGGGGGGAGGATAAGATTTAATAAGTGTTCTAAATTCAATTGTTGATCTCGTGTGATTTTTACGAGGGATATATGCGTTTATGTGTATGTATTAAGTATGTCTAATTTTCTTTGGAATATATTTTACCTTCGGAGTATGTCTGAGTTTACTGAAGCTCTGTTTTGGAACGTTTGGTTGGAGAGGAAATAAGTTTGTGACGTTTGTGACATGGGGTGGGGGGATAAGATTTAATGAGTGTTCTAAATTCAATTGTTGATCTCGTGTGATAATTTTTAGGGGAGGAAGATATGAGTTAGTGGGTGTTATGCGTTTATGTGTTTGGTATTGTGACACTGGGTTATGAGTTTATGTGTGTTTGGTATTGTAATAAAAGGGGCGGGTTTGTGACATTGGATGAATTTGGTATTTATTATGAATTTGGTTTTTGTTTTACTATCATGTTAGTTTAGTTTATTGGTTTGATTTTATTTATTCGCGTAGAATCTACTTTTATACTTATACTACAAAAATAACTTATACAATTCTTTGTGCATGATTGATGCTACAAGGATGGTGGAAGCTTGGACATTGGAGAGGATAATTTGTGTGACTTTAGTTAGACGCTTGATGTTATTTTTCTTTTGTACTCTAATTTTATAATGAGTTTTATTTTTAGACATTTGCAATAATGTTATGAATGTTATGAATGATACACAATTGTTCAATGATATTTGCTATATTTTTTAAATTTAGCAACAAACTATAAGATCAAATTTTGTTATTATGGAAAAATTATGTATATTGCAAATCTCGGATGAGAAATCAATAACATTACAATGTTTGTATGGAAATCTTTAGGATTGAAATTAGGATACAAAGAAAGAATGAAATAATATTATAAAAAAGTGACGTTTTTTAAGTTTTTCGTCGCCTGCAAAAAAATGCGACGAAAGGTTTTCGTCGCTTGCCAAGAAATAAAGCGATGAAAACATATTTCGTCGCCTGCAAAGAAAGGAAGCGACGAAATATGTTTCGTCGCCTCCTTAGTGACGAAAAATATTTTGTCGCTAATCTAGCGACAAAATGGTTTCGTCGCTATGGTAGCGACGAAAAAAAAACGTCGCTTAGGTGACGTTTTACCGTTTCATCGCTAAACTTTGTTTCTGTCGCTGAAACAATTCAGCAACACGTAATCAGCGACAAAGCGGGCGACATAATGGATTTCGTCGCTGATACACATAGCGACGAAATGTAGGCTTCAGGGACGAAAATATTTCGTCGCTGAAAGCCTTAAATTTTGTATTGTTGCTACTGTAGAGACCTCAGCGGAAGAGGTGTGCTTGACCAAAGGGGTGAACAAAACAAGAAAGAAAAAAATTCCGGCCGAAATTGCTCCTTGCCCAATTTCAAGGCCAAGAACCCAAGCCGTTGTAGCATGTTTGGCTGTCCAAAAAGAAGCTGAGGCTGGTCCATCTAAAAATGCCAAGAGGGCTAGGGTGCTAAGAGAGACAGAAGATCAACTTGAGGAGACCAACAAAGAGGAGACCGCTTCTATTGAGCAAACACCGTCCAAGGCAAAAAGAGTGAGGTTGGAACTGAAAAGGTCTAACTTCACAACACGTGAGATGTTAGTTGAGAAGGGTTTTGATGAAGCACAAGTGCACGTGCTAGAATAA

mRNA sequence

ATGATTACCTTAAAAGCGTATCATGCTTATCAAGGAGACCAAAAACCAGAAGAAGAAATAATGGAGACAGTCCTTGGGAGAAGATCGAACTATATAATAGGAATGGGATATGGACCGAAGCCCACCAGAAATAAAGGATCATCATCAAAATATTCTGATGAATATGTGGAGTCATTAGAGTCTCGTCTTCAGAAGCATGAGGAAGAATTGGTAGCTCAACGAAAGGCGAACGAAGACCAACAAATGGCCACCCAAGAACAAATACAGAAAGCATTGGAGGCCCAAAGCCAGAAGTTCAACAGGAAACTTCTCAAAATGCAACAAATGTTTCTTTCGGGGAGAGGGATTTCATCGAATAAGACCTCAGCGGAAGAGGTGTGCTTGACCAAAGGGGTGAACAAAACAAGAAAGAAAAAAATTCCGGCCGAAATTGCTCCTTGCCCAATTTCAAGGCCAAGAACCCAAGCCGTTGTAGCATGTTTGGCTGTCCAAAAAGAAGCTGAGGCTGGTCCATCTAAAAATGCCAAGAGGGCTAGGGTGCTAAGAGAGACAGAAGATCAACTTGAGGAGACCAACAAAGAGGAGACCGCTTCTATTGAGCAAACACCGTCCAAGGCAAAAAGAGTGAGGTTGGAACTGAAAAGGTCTAACTTCACAACACGTGAGATGTTAGTTGAGAAGGGTTTTGATGAAGCACAAGTGCACGTGCTAGAATAA

Coding sequence (CDS)

ATGATTACCTTAAAAGCGTATCATGCTTATCAAGGAGACCAAAAACCAGAAGAAGAAATAATGGAGACAGTCCTTGGGAGAAGATCGAACTATATAATAGGAATGGGATATGGACCGAAGCCCACCAGAAATAAAGGATCATCATCAAAATATTCTGATGAATATGTGGAGTCATTAGAGTCTCGTCTTCAGAAGCATGAGGAAGAATTGGTAGCTCAACGAAAGGCGAACGAAGACCAACAAATGGCCACCCAAGAACAAATACAGAAAGCATTGGAGGCCCAAAGCCAGAAGTTCAACAGGAAACTTCTCAAAATGCAACAAATGTTTCTTTCGGGGAGAGGGATTTCATCGAATAAGACCTCAGCGGAAGAGGTGTGCTTGACCAAAGGGGTGAACAAAACAAGAAAGAAAAAAATTCCGGCCGAAATTGCTCCTTGCCCAATTTCAAGGCCAAGAACCCAAGCCGTTGTAGCATGTTTGGCTGTCCAAAAAGAAGCTGAGGCTGGTCCATCTAAAAATGCCAAGAGGGCTAGGGTGCTAAGAGAGACAGAAGATCAACTTGAGGAGACCAACAAAGAGGAGACCGCTTCTATTGAGCAAACACCGTCCAAGGCAAAAAGAGTGAGGTTGGAACTGAAAAGGTCTAACTTCACAACACGTGAGATGTTAGTTGAGAAGGGTTTTGATGAAGCACAAGTGCACGTGCTAGAATAA

Protein sequence

MITLKAYHAYQGDQKPEEEIMETVLGRRSNYIIGMGYGPKPTRNKGSSSKYSDEYVESLESRLQKHEEELVAQRKANEDQQMATQEQIQKALEAQSQKFNRKLLKMQQMFLSGRGISSNKTSAEEVCLTKGVNKTRKKKIPAEIAPCPISRPRTQAVVACLAVQKEAEAGPSKNAKRARVLRETEDQLEETNKEETASIEQTPSKAKRVRLELKRSNFTTREMLVEKGFDEAQVHVLE

Homology

[Close]

BLAST of MC04g_new0364 vs. NCBI nr
Match: XP_022148911.1 (uncharacterized protein LOC111017461 [Momordica charantia])

HSP 1 Score: 176 bits (446), Expect = 9.45e-51
Identity = 95/126 (75.40%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MITLKAYHAYQGDQKPEEEIMETVLGRRSNYIIGMGYGPKPTRNKGSSSKYSDEYVESLE 60
           MITLKAYHA QGD+K EEEIMETVLG+RSNY+IGMGYGPKPTRNKGSSSKYSDEYVESLE
Sbjct: 112 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 171

Query: 61  SRLQKHEEELVAQRKANEDQQMATQEQIQKALEAQSQKFNRKLLKMQQMFLSGRGISSNK 120
           +RLQKHEEE+             TQEQIQKALEAQSQ+FNRKLL+MQQMFLSG G SS  
Sbjct: 172 ARLQKHEEEMAR----------TTQEQIQKALEAQSQEFNRKLLEMQQMFLSGGGSSSTS 227

Query: 121 TSAEEV 126
               E+
Sbjct: 232 KVCREI 227

[Close]

BLAST of MC04g_new0364 vs. NCBI nr
Match: XP_022143616.1 (uncharacterized protein LOC111013476 [Momordica charantia])

HSP 1 Score: 174 bits (442), Expect = 1.19e-50
Identity = 94/118 (79.66%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MITLKAYHAYQGDQKPEEEIMETVLGRRSNYIIGMGYGPKPTRNKGSSSKYSDEYVESLE 60
           MITLKAYHA QGD+K EEEIMETVLG+RSNY+IGMGYGPKPTRNKGSSSKYSDEYVESLE
Sbjct: 107 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 166

Query: 61  SRLQKHEEELVAQRKANEDQQMATQEQIQKALEAQSQKFNRKLLKMQQMFLSGRGISS 118
           +RLQKHEEE+             TQEQIQKALEAQSQ+FNRKLL+MQQMFLSG G SS
Sbjct: 167 ARLQKHEEEMAR----------TTQEQIQKALEAQSQEFNRKLLEMQQMFLSGGGSSS 214

[Close]

BLAST of MC04g_new0364 vs. NCBI nr
Match: XP_022156786.1 (uncharacterized protein LOC111023620 [Momordica charantia])

HSP 1 Score: 127 bits (320), Expect = 3.72e-32
Identity = 75/113 (66.37%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 121 TSAEEVCLTKGVNKTRKKKIPAEIAPCPISRPRTQAVVACLAVQKEAEAGPSKNAKRARV 180
           TS E+VCLTK V K R KK   EI P   SRP T+A +A LA QKEAEAGP K AKR + 
Sbjct: 61  TSEEKVCLTKVVKKARNKKNLDEIVPGANSRPCTRATIASLAAQKEAEAGPFKKAKRVKG 120

Query: 181 LRETEDQLEETNKEETASIEQTPSKAKRVRLELKRSNFTTREMLVEKGFDEAQ 233
           LR +E+ L+E N EE  SIEQTPSKAKRVR E+KR NFT RE+LVEKGFDEAQ
Sbjct: 121 LRRSEEPLDEVNDEELDSIEQTPSKAKRVRWEVKRVNFTAREILVEKGFDEAQ 173

[Close]

BLAST of MC04g_new0364 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 105 bits (261), Expect = 1.17e-21
Identity = 59/90 (65.56%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 149  ISRPRTQAVVACLAVQKEAEAGPSKNAKRARVLRETEDQLEETNKEETASIEQTPSKAKR 208
            +SRPRT+  VA LA QKEAEAGPSK AK ARV R  E+ LEE N+EE  S EQTPS+ KR
Sbjct: 1053 VSRPRTRTAVARLAAQKEAEAGPSKKAKTARVQRVAEEPLEEANEEEPDSTEQTPSRVKR 1112

Query: 209  VRLELKRSNFTTREMLVEKGFDEAQVHVLE 238
            VRLE++R  FTTR++L+E+GFDEAQ  V E
Sbjct: 1113 VRLEVRRPTFTTRDILLERGFDEAQEPVPE 1142

[Close]

BLAST of MC04g_new0364 vs. NCBI nr
Match: XP_022153681.1 (uncharacterized protein LOC111021138 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 2.61e-14
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   MITLKAYHAYQGDQKPEEEIMETVLGRRSNYIIGMGYGPKP 41
           MITLKA HA QGD+K EEEIMETVLGRRSNYIIGMGYGPKP
Sbjct: 107 MITLKANHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKP 147

[Close]

BLAST of MC04g_new0364 vs. ExPASy TrEMBL
Match: A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 4.58e-51
Identity = 95/126 (75.40%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MITLKAYHAYQGDQKPEEEIMETVLGRRSNYIIGMGYGPKPTRNKGSSSKYSDEYVESLE 60
           MITLKAYHA QGD+K EEEIMETVLG+RSNY+IGMGYGPKPTRNKGSSSKYSDEYVESLE
Sbjct: 112 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 171

Query: 61  SRLQKHEEELVAQRKANEDQQMATQEQIQKALEAQSQKFNRKLLKMQQMFLSGRGISSNK 120
           +RLQKHEEE+             TQEQIQKALEAQSQ+FNRKLL+MQQMFLSG G SS  
Sbjct: 172 ARLQKHEEEMAR----------TTQEQIQKALEAQSQEFNRKLLEMQQMFLSGGGSSSTS 227

Query: 121 TSAEEV 126
               E+
Sbjct: 232 KVCREI 227

[Close]

BLAST of MC04g_new0364 vs. ExPASy TrEMBL
Match: A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 5.78e-51
Identity = 94/118 (79.66%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MITLKAYHAYQGDQKPEEEIMETVLGRRSNYIIGMGYGPKPTRNKGSSSKYSDEYVESLE 60
           MITLKAYHA QGD+K EEEIMETVLG+RSNY+IGMGYGPKPTRNKGSSSKYSDEYVESLE
Sbjct: 107 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 166

Query: 61  SRLQKHEEELVAQRKANEDQQMATQEQIQKALEAQSQKFNRKLLKMQQMFLSGRGISS 118
           +RLQKHEEE+             TQEQIQKALEAQSQ+FNRKLL+MQQMFLSG G SS
Sbjct: 167 ARLQKHEEEMAR----------TTQEQIQKALEAQSQEFNRKLLEMQQMFLSGGGSSS 214

[Close]

BLAST of MC04g_new0364 vs. ExPASy TrEMBL
Match: A0A6J1DW11 (uncharacterized protein LOC111023620 OS=Momordica charantia OX=3673 GN=LOC111023620 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 1.80e-32
Identity = 75/113 (66.37%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 121 TSAEEVCLTKGVNKTRKKKIPAEIAPCPISRPRTQAVVACLAVQKEAEAGPSKNAKRARV 180
           TS E+VCLTK V K R KK   EI P   SRP T+A +A LA QKEAEAGP K AKR + 
Sbjct: 61  TSEEKVCLTKVVKKARNKKNLDEIVPGANSRPCTRATIASLAAQKEAEAGPFKKAKRVKG 120

Query: 181 LRETEDQLEETNKEETASIEQTPSKAKRVRLELKRSNFTTREMLVEKGFDEAQ 233
           LR +E+ L+E N EE  SIEQTPSKAKRVR E+KR NFT RE+LVEKGFDEAQ
Sbjct: 121 LRRSEEPLDEVNDEELDSIEQTPSKAKRVRWEVKRVNFTAREILVEKGFDEAQ 173

[Close]

BLAST of MC04g_new0364 vs. ExPASy TrEMBL
Match: A0A6J1DMT3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia OX=3673 GN=LOC111022007 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 5.65e-22
Identity = 59/90 (65.56%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 149  ISRPRTQAVVACLAVQKEAEAGPSKNAKRARVLRETEDQLEETNKEETASIEQTPSKAKR 208
            +SRPRT+  VA LA QKEAEAGPSK AK ARV R  E+ LEE N+EE  S EQTPS+ KR
Sbjct: 1053 VSRPRTRTAVARLAAQKEAEAGPSKKAKTARVQRVAEEPLEEANEEEPDSTEQTPSRVKR 1112

Query: 209  VRLELKRSNFTTREMLVEKGFDEAQVHVLE 238
            VRLE++R  FTTR++L+E+GFDEAQ  V E
Sbjct: 1113 VRLEVRRPTFTTRDILLERGFDEAQEPVPE 1142

[Close]

BLAST of MC04g_new0364 vs. ExPASy TrEMBL
Match: A0A6J1DLF1 (uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021138 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.26e-14
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   MITLKAYHAYQGDQKPEEEIMETVLGRRSNYIIGMGYGPKP 41
           MITLKA HA QGD+K EEEIMETVLGRRSNYIIGMGYGPKP
Sbjct: 107 MITLKANHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKP 147

The following BLAST results are available for this feature:

BLAST of MC04g_new0364 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g_new0364 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148911.1	9.45e-51	75.40	uncharacterized protein LOC111017461 [Momordica charantia]	[more]
XP_022143616.1	1.19e-50	79.66	uncharacterized protein LOC111013476 [Momordica charantia]	[more]
XP_022156786.1	3.72e-32	66.37	uncharacterized protein LOC111023620 [Momordica charantia]	[more]
XP_022154847.1	1.17e-21	65.56	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia]	[more]
XP_022153681.1	2.61e-14	90.24	uncharacterized protein LOC111021138 [Momordica charantia]	[more]

BLAST of MC04g_new0364 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6S9	4.58e-51	75.40	uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1CQT5	5.78e-51	79.66	uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DW11	1.80e-32	66.37	uncharacterized protein LOC111023620 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DMT3	5.65e-22	65.56	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia...	[more]
A0A6J1DLF1	1.26e-14	90.24	uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of MC04g_new0364 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 174..201
None	No IPR available	COILS	Coil	Coil	coord: 56..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g_new0364.1	MC04g_new0364.1	mRNA