MC04g_new0360 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g_new0360
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDUF4216 domain-containing protein
LocationMC04: 13419672 .. 13423315 (-)
RNA-Seq ExpressionMC04g_new0360
SyntenyMC04g_new0360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTCGCCGAAAGCTAGACCTTCGGCGACGACTTTAGAAAATCGTCGCCGAAGGTGTACGTTCCAGAACCCCGATAAGGTTCTAGATTGACCTTCGACAACCAATTACATGTTTCGTCGCCGAAGGTCTAGCTTTCGGCGACGAAGGGCAAGTTTCGTCGCTGAAACCTAAAGTGGTTTCGGCGACTAAACATATAATTGGTCGCCGAAAGTCGCTTTTGGCGACAAATTTTCTATTTCGTCGCCGAAAGTAGTTTATTTCATTTTTTGGCGGGTCTTTTCAGCGACGAAATCCCGATTTCGTCGCCAAAGGGTAAATTTGAATTACCTTTCGGCGACGAAATGTGGACCTTTGGCGACCACTTTAAAAATCGTCGCCGAAAGGTGCCCTAAAAATCCAATCACCTTCCTCATTTCTTCATTTCTCTTCTCATCTCTTTCACTCATCTCTTTCGCGCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTGGTTGTGAGATGTTGAAGTCTTGTTTGTTTGATTTAATTTATTGGCTTTGTAAGTATGATTGTTTTATTTATACTTAAATTAGTCGATGTTTGTGCGCATTTGTTTTATTTATATGTATTCTTTGTGATTTTATTGTTGTTAGTTTTGAATTTATAATGAATTAGGAATGATTATTATGTTGGTTGTGACCGACGTTGGTCTAGGATTTTTAGACAACATCTCTAAGTATGTTTTAGTTCTTTTTTTAAGGCCTCAATAATACTTTCAAACTCTTCTACTTTTAACTACAACACTCATAATCGACAATAATGACCACACCCTTGCATCCTCGACTCAGTTTGAAAACAAATTTTAGATATTTCTATTTTCAAAATATCCTTAGGTTGATGACAAAATGAACATAATCTTTTGTCTGATTCTTTTAGGATTCAACATTGACTATTTATACTGAATTGGAGATTTTTTAAAGAGTATTATCATCGATAATGAATAAGGATTGGATTAAGGTTAGGGATAGATTCTCGCCCGAGTATGTTCAAGGAGTAAAACATTTCATAGAATTGGCAAAACGTCACGTCAACAATACGGGGAAAACAAGATGTCCATGTAGATATTGTATGAATGTAAAATGGCTTTCAATTGATGGAGTAGAAAGACACTTGTTTATAAATGGAATATCACATTCATATACTCAATGAATATACCATGGAGAAGAACCAGTCCCTTCAAGTTGTTATACAAGACGTGAAACTCCTTCCCACAATGAATTAAATAGAGAACACAATGTTATGAATAATGAGAATGGTGATATGTCTAGACTTCTCAATGATTTACAATATCGCATGGTAGAAGAAAATGTAGAAGGTGAACAATTTTGTTTTGAGATGCCCCCAAACGAACATGGAAGAGGCAAGTCTAATAGTTTCGAGCAGTTGTTCAATGAAGCGCGTAGTCAATTGTACCCAGGTTGTACAAAATTTTCATCATTGAATTTTTTAGTAAAGCTGATGCATATCAAGGTCATTAACAATTGGAGTAATAAATCGTTTGATATGTTACTTGAATTGTTAAAGGAGGCATTTACGATAGCTGCATCTATACCTAGTACGTCATACGAGGCTAAAAGAAGACTGCATGATTTAGGACTTTCATATGAGTCCATACATGCCGGCAAGTATGACTGTATATTATTCAGGAAAGAATATTCTGAATGTCAAAGTTGTCCAGTATGTGGTGAACCTCGTTATAAAAACAGTGATGAGAAAGCTTCACAAGTCCCACAAAAAGTGTTACGACATTTTCCGTTGATACCAAGATTGAAACGGTTCTTTTCTTCAAAACATTTCACTTCTGAAATGAGGTGGCATAAAGAAAAATGAGTTGAGACAGAGGGTGTCTTACGACATCCAGCTGACGCTTTGGGGTGGAAACATCTAGATAGCACATTTCCTCAATTTGCTTCAGACCCACGAAATGTTCGTTTAGGACTAGCTTCAGATGGGTTTAATCCATTTGGGAATATGAACAATTCGTATAGCATGTGGCCAGTGGTACTTATTATAATGCAACAGTAATAACACTTTAATATATGTTCGATGTTTTTTTGTTGTAGGGTCATTTCGATTTCAACGAATCAGATCGAGTTATGATGAAATTCATCGAGCATGAGATGAGAACGACACATAAGGCGTATAGGGCAAAATTGCGCCAACACTACCTGAGTTTTCCCACACCTGAGATTGCGCGCAACAATCCTCCAGAGCGGTTGTTGGCAAAACCAGACGATTCGAACATGCTGTGCGATAGATAGAGACAGATGAGTGGAAGGTAATTTACAAATATCACTTATACTTTTTTTTTAGAATTTATATTTAATATATATTCTCATTTAAGTTTTCTTTTGTTAGCAAAAATCTGAGACCAACAAACGCAACAAGGCGAAGATGCCATTCAACCATCGTGCGGGGCCGAAAGCGTTTGCTATTATTGCAAAGGAGAAGGTACAATGCAATAATATTTTTTTAACCATATACTTATATTACTTAAGATTGATTATCAACAATTATGTGTTATCAATTGTAGAAAGACGAAGAGGGAGGTGACAACTTTACTGAAATCGATTTGTTCAGGGAGACGAGATATTCTGACACTAAAGGTTGGGTCGAAGGAGCGGAGACAACTTACGTAAGTTTTACAAATCTTATAACAATTAACTTCAAATTATGCATTGAATTTTATGTGTAAACATTTTGTTCTTTTTAAAATATGTATGCAGCTAGACATGATGCGTGTTAGAGAAGCATCTATGGAAGACGGAGGTGAACCGATACCAGACTCAGAAGTATTGGAGACAGTTCTTGGTTATCGTTAAGGATACGTTAAGGGTGCTGGTTGGGGCCCAAAACCAAAGTCTCGTAGAGGTTCTTCTTCAAGTGTAGCATCAACACAGCGGGAAGAAGAGCTGTCACAAGAAATATGTACTCTAAGAGAAGAATTTCTGGACCGTCTCACGCAGAAAGACAAGGAGTTAGATGAGCGTCTCGCAGCCAAAGATTCTGAGATTACGAGTCTACGCAGTGAAATGACAGATTTGAGATCAATGGTGCTACAACTTATGAGTCAGTCTAGTGGAGCCAGCTTGTCAAAATAG

mRNA sequence

ATGTGGTCGCCGAAAGCTAGACCTTCGGCGACGACTTTAGAAAATCGTCGCCGAAGGTGTACGTTCCAGAACCCCGATAAGCAAAAATCTGAGACCAACAAACGCAACAAGGCGAAGATGCCATTCAACCATCGTGCGGGGCCGAAAGCGTTTGCTATTATTGCAAAGGAGAAGAAAGACGAAGAGGGAGGTGACAACTTTACTGAAATCGATTTGTTCAGGGAGACGAGATATTCTGACACTAAAGGTTGGGTCGAAGGAGCGGAGACAACTTACCTAGACATGATGCGTGTTAGAGAAGCATCTATGGAAGACGGAGGTGAACCGATACCAGACTCAGAAGTATTGGAGACAGTTCTTGCATCAACACAGCGGGAAGAAGAGCTGTCACAAGAAATATGTACTCTAAGAGAAGAATTTCTGGACCGTCTCACGCAGAAAGACAAGGAGTTAGATGAGCGTCTCGCAGCCAAAGATTCTGAGATTACGAGTCTACGCAGTGAAATGACAGATTTGAGATCAATGGTGCTACAACTTATGAGTCAGTCTAGTGGAGCCAGCTTGTCAAAATAG

Coding sequence (CDS)

ATGTGGTCGCCGAAAGCTAGACCTTCGGCGACGACTTTAGAAAATCGTCGCCGAAGGTGTACGTTCCAGAACCCCGATAAGCAAAAATCTGAGACCAACAAACGCAACAAGGCGAAGATGCCATTCAACCATCGTGCGGGGCCGAAAGCGTTTGCTATTATTGCAAAGGAGAAGAAAGACGAAGAGGGAGGTGACAACTTTACTGAAATCGATTTGTTCAGGGAGACGAGATATTCTGACACTAAAGGTTGGGTCGAAGGAGCGGAGACAACTTACCTAGACATGATGCGTGTTAGAGAAGCATCTATGGAAGACGGAGGTGAACCGATACCAGACTCAGAAGTATTGGAGACAGTTCTTGCATCAACACAGCGGGAAGAAGAGCTGTCACAAGAAATATGTACTCTAAGAGAAGAATTTCTGGACCGTCTCACGCAGAAAGACAAGGAGTTAGATGAGCGTCTCGCAGCCAAAGATTCTGAGATTACGAGTCTACGCAGTGAAATGACAGATTTGAGATCAATGGTGCTACAACTTATGAGTCAGTCTAGTGGAGCCAGCTTGTCAAAATAG

Protein sequence

MWSPKARPSATTLENRRRRCTFQNPDKQKSETNKRNKAKMPFNHRAGPKAFAIIAKEKKDEEGGDNFTEIDLFRETRYSDTKGWVEGAETTYLDMMRVREASMEDGGEPIPDSEVLETVLASTQREEELSQEICTLREEFLDRLTQKDKELDERLAAKDSEITSLRSEMTDLRSMVLQLMSQSSGASLSK
Homology
[Close]
BLAST of MC04g_new0360 vs. NCBI nr
Match: XP_038887413.1 (uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 3.00e-11
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 0 

Query: 27  KQKSETNKRNKAKMPFNHRAGPKAFAIIAKEKKDEEGGDNFTEIDLFRETRYSDTKGWVE 86
           K+K+ETNK++++K+P+ HR G K+F  +  E K +EG D   ++DLFR++ + +  GWV 
Sbjct: 553 KKKTETNKKSRSKIPYLHRTGSKSFVQVQSEMKIKEGRD-VDQVDLFRQSHFCEKDGWVN 612

Query: 87  G-AETTYLDMMRVREASMEDGGEPIPDSEVLETVL 120
             A+  YL+M R+ EAS ++   P+   EV + VL
Sbjct: 613 NNAKDAYLEMQRLMEASFQEDPTPMSSVEVCKQVL 646

[Close]
BLAST of MC04g_new0360 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 3.11e-11
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 0 

Query: 27  KQKSETNKRNKAKMPFNHRAGPKAFAIIAKEKKDEEGGDNFTEIDLFRETRYSDTKGWVE 86
           K+K+ETNK++++K+P+ HR G K+F  +  E K +EG D   ++DLFR++ + +  GWV 
Sbjct: 714 KKKTETNKKSRSKIPYLHRTGSKSFVQVQSEMKIKEGRD-VDQVDLFRQSHFCEKDGWVN 773

Query: 87  G-AETTYLDMMRVREASMEDGGEPIPDSEVLETVL 120
             A+  YL+M R+ EAS ++   P+   EV + VL
Sbjct: 774 NNAKDAYLEMQRLMEASFQEDPTPMSSVEVCKQVL 807

[Close]
BLAST of MC04g_new0360 vs. NCBI nr
Match: XP_038887408.1 (poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 3.12e-11
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 0 

Query: 27  KQKSETNKRNKAKMPFNHRAGPKAFAIIAKEKKDEEGGDNFTEIDLFRETRYSDTKGWVE 86
           K+K+ETNK++++K+P+ HR G K+F  +  E K +EG D   ++DLFR++ + +  GWV 
Sbjct: 741 KKKTETNKKSRSKIPYLHRTGSKSFVQVQSEMKIKEGRD-VDQVDLFRQSHFCEKDGWVN 800

Query: 87  G-AETTYLDMMRVREASMEDGGEPIPDSEVLETVL 120
             A+  YL+M R+ EAS ++   P+   EV + VL
Sbjct: 801 NNAKDAYLEMQRLMEASFQEDPTPMSSVEVCKQVL 834

[Close]
BLAST of MC04g_new0360 vs. NCBI nr
Match: XP_038887410.1 (poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 69.7 bits (169), Expect = 4.86e-10
Identity = 37/90 (41.11%), Postives = 60/90 (66.67%), Query Frame = 0 

Query: 27  KQKSETNKRNKAKMPFNHRAGPKAFAIIAKEKKDEEGGDNFTEIDLFRETRYSDTKGWVE 86
           K+K+ETNK++++K+P+ HR G K+F  +  E K +EG D   ++DLFR++ + +  GWV 
Sbjct: 741 KKKTETNKKSRSKIPYLHRTGSKSFVQVQSEMKIKEGRD-VDQVDLFRQSHFCEKDGWVN 800

Query: 87  G-AETTYLDMMRVREASMEDGGEPIPDSEV 115
             A+  YL+M R+ EAS ++  +P P S V
Sbjct: 801 NNAKDAYLEMQRLMEASFQE--DPTPMSSV 827

[Close]
BLAST of MC04g_new0360 vs. NCBI nr
Match: RVW30045.1 (hypothetical protein CK203_104581 [Vitis vinifera])

HSP 1 Score: 68.6 bits (166), Expect = 6.67e-10
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 27  KQKSETNKRNKAKMPFNHRAGPKAFAIIAKEK-KDEEGGDNFTEIDLFRETRYSDTKGWV 86
           K+++  N  N+ K+PFNHR G K FA   +        G+   E++LFR T Y+++KGW+
Sbjct: 130 KKRATINSENREKLPFNHRGGSKPFAFHRQHNLMSVATGELQGEVELFRATHYNESKGWI 189

Query: 87  -EGAETTYLDMMRVREASMEDGGEPIPDSEVLETVL 120
            + A++ Y +M +++E S +DG  PI D E+ + VL
Sbjct: 190 NDTAKSRYEEMRKLQEQSTQDGDTPISDLEITQRVL 225

[Close]
BLAST of MC04g_new0360 vs. ExPASy TrEMBL
Match: A0A438D3L2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_104581 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.23e-10
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 27  KQKSETNKRNKAKMPFNHRAGPKAFAIIAKEK-KDEEGGDNFTEIDLFRETRYSDTKGWV 86
           K+++  N  N+ K+PFNHR G K FA   +        G+   E++LFR T Y+++KGW+
Sbjct: 130 KKRATINSENREKLPFNHRGGSKPFAFHRQHNLMSVATGELQGEVELFRATHYNESKGWI 189

Query: 87  -EGAETTYLDMMRVREASMEDGGEPIPDSEVLETVL 120
            + A++ Y +M +++E S +DG  PI D E+ + VL
Sbjct: 190 NDTAKSRYEEMRKLQEQSTQDGDTPISDLEITQRVL 225

[Close]
BLAST of MC04g_new0360 vs. ExPASy TrEMBL
Match: A0A438G848 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_061681 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.46e-10
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 27  KQKSETNKRNKAKMPFNHRAGPKAFAIIAKEKKDEEG-GDNFTEIDLFRETRYSDTKGWV 86
           K+++  N  N+ K+PFNHR G K FA   +        G+   E++LFR T Y+++KGW+
Sbjct: 232 KKRATINSENREKLPFNHRGGSKPFAFHRQHNSMSVATGELQGEVELFRATHYNESKGWI 291

Query: 87  -EGAETTYLDMMRVREASMEDGGEPIPDSEVLETVL 120
            + A++ Y +M +++E S +DG  PI D E+ + VL
Sbjct: 292 NDTAKSRYEEMRKLQEQSTQDGDTPISDLEITQRVL 327

[Close]
BLAST of MC04g_new0360 vs. ExPASy TrEMBL
Match: A0A438JSE8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_009494 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.50e-10
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 27  KQKSETNKRNKAKMPFNHRAGPKAFAIIAKEKKDEEG-GDNFTEIDLFRETRYSDTKGWV 86
           K+++  N  N+ K+PFNHR G K FA   +        G+   E++LFR T Y+++KGW+
Sbjct: 240 KKRATINSENREKLPFNHRGGSKPFAFHRQHNSMSVATGELQGEVELFRATHYNESKGWI 299

Query: 87  -EGAETTYLDMMRVREASMEDGGEPIPDSEVLETVL 120
            + A++ Y +M +++E S +DG  PI D E+ + VL
Sbjct: 300 NDTAKSRYEEMRKLQEQSTQDGDTPISDLEITQRVL 335

[Close]
BLAST of MC04g_new0360 vs. ExPASy TrEMBL
Match: A0A6J1DUH3 (uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023212 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.13e-09
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 0 

Query: 27  KQKSETNKRNKAKMPFNHRAGPKAFAIIAKEKKDEEGGDNFTEIDLFRETRYSDTKGWV- 86
           K+ ++ NK+N+AK+PFNHRAG K+F  +  E K +EG D    +DLF E+ Y++  G V 
Sbjct: 89  KEITKKNKKNRAKLPFNHRAGSKSFLQLQHELKIKEGSD-IGPVDLFGESHYNEKDGLVN 148

Query: 87  EGAETTYLDMMRVREASMEDGGEPIPDSEVLETVL 120
           + AE  Y +M  + +A  ++G EP+   E    VL
Sbjct: 149 DNAEDAYENMQNLIKAPTQEGCEPVTQPEACRKVL 182

[Close]
BLAST of MC04g_new0360 vs. ExPASy TrEMBL
Match: A0A438CDA5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_109891 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.01e-09
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 0 

Query: 27  KQKSETNKRNKAKMPFNHRAGPKAFAIIAKEKKDEEG-GDNFTEIDLFRETRYSDTKGWV 86
           K+++  N  N+ K+PFNHR G K FA   +        G+   E+ LF  T Y+++KGW+
Sbjct: 230 KKRATINSENREKLPFNHRGGSKPFAFHRQHNSMSVATGELQGEVKLFHATHYNESKGWI 289

Query: 87  -EGAETTYLDMMRVREASMEDGGEPIPDSEVLETVL 120
            + A++ Y +M +++E S +DG  PI D E+ + VL
Sbjct: 290 NDTAKSRYEEMRKLQEQSTQDGDTPISDLEITQRVL 325

The following BLAST results are available for this feature:
BLAST of MC04g_new0360 vs.
Match NameE-valueIdentityDescription
BLAST of MC04g_new0360 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887413.13.00e-1140.00uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida][more]
XP_038887409.13.11e-1140.00poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida][more]
XP_038887408.13.12e-1140.00poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida][more]
XP_038887410.14.86e-1041.11poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida][more]
RVW30045.16.67e-1037.50hypothetical protein CK203_104581 [Vitis vinifera][more]
BLAST of MC04g_new0360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438D3L23.23e-1037.50Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_104581 PE=4 SV=1[more]
A0A438G8483.46e-1037.50Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_061681 PE=4 SV=1[more]
A0A438JSE83.50e-1037.50Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_009494 PE=4 SV=1[more]
A0A6J1DUH31.13e-0940.00uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A438CDA54.01e-0936.46Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_109891 PE=4 SV=1[more]
BLAST of MC04g_new0360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 141..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..38
IPR004252Probable transposase, Ptta/En/Spm, plantPFAMPF03004Transposase_24coord: 26..96
e-value: 5.9E-9
score: 36.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g_new0360.1MC04g_new0360.1mRNA