MC04g_new0022 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g_new0022
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionphotosystem II repair protein PSB27-H1, chloroplastic-like
LocationMC04: 1128411 .. 1130242 (-)
RNA-Seq ExpressionMC04g_new0022
SyntenyMC04g_new0022
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAATTAAATTGATCGTAGTTTAATGAATAAGACAGTTATCACTCATAAATGAGGACAAAATTTTATTAAAAAAAGAAAATATAAAGGTGAAAATGGATAGAACGTGCAAGTTCAAGGCTAGAATGGGATTTGAATCGAAATATACCAAAATTTCCCATGATTCTCCTCTCACCTTATTTTCTTGGGTTGAACGTAAGCGGGCCAGTAGTTGGGCCGAGCTGAACCAGATCGGCCCAAATTTCGGAAAATTTGGACTTCCATTTGACATGGTCTTTTTGTAAAAACCTCGGCCCAGCCCAATTCTCCCAATGAACAGAAAGAAAGAGAAGATCTAAAACTAATACCTCATTGGTCCGTGTCTCATCCAAAAGTCCACGGAGTAAGATAAGATGATAAGCACACGTGGCAAACACCCAATTCCCCAAAATTCTCACTAAATTTCACTCTCCCCACGCCACTCCCCTGTTTTCCTGACCTCCAAAATCAATCAATCATGGCCTCCCCAACATTGATAACTCCCACTTCCAAATCCCACGTTCTCGTCCCCCTCAGACCCAAATCACCCGCCGCAACCGCCGCCATTGCCTCCGCCGTCACCACCTCCGCGCAGCAGCCCCGCCGCCGGGAGTTCCTGTCCCTGACGGCCTCTGTTCTCGCTCCGGCGTGGGCCTTGTTCCCTCCGGCGCCGGCGCTGGCCTCGTCCGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATCGGGAAGGTGAGAACGACGATCAACATGGACAAAAACGACCCCAATGTGGCGGCGGCGGTGGCGGAGCTGAGGGAAACTTCCAATTCGTGGGTGGCCAAGTACCGGAAGGAGAAGGCCCTGTTGGCCCGGGCCTCTTTCAGGGACATGTACTCGGCGCTCAACGCCGTCTCCGGCCATTACATAAGCTTTGGCCCGACGGCGCCGATTCCGGCGAAGAGGAAAGCCAGGATTTTGGAAGAGATGGACACTGCTGAGAAGGCTCTGTTGAGAGGAAGATGAAGTGAGGAAATTAATAATTTGCATTTTTTTTTTCTTTCTGCTTTTTTTTTTTCTCTTTTGATATTTATGGGTTTGTAAGTAGAGGATGAGGTTCACATTTTGTGAATTTACAAGAGGGGAAAATTCTAAAATTCGGTGATAAATGCTGAGATTAATACAAGCTGATTAGAATTTCTCACAATGTTTTTATCTTTAATTATTGTTATATGCTCATAGCAATTATGTTCAGTTCAAGTTCTACTTTAATTATTTGGTTTTTTTAGGGAAACCAATAACTTTAAGAATTATCTTTTTTTTTTTTTTTTTTTGACAGAGAGGCAATATGACATTGAGAAGTGCTAAAAGAAAGAGATGTGTAGTTGTAACTGGTATAGTGTTTGTCTAGGTATGAAATTAGGCGTTCTCGCTTTGCCACGTCATTATCAAATCAACCAATCATTCCAATTTTTATTATTTTCGAACGTACTTTACATTTAAAAACATTTACAAAAACACAATATATTGTTTTTTTTTTTTTGAAGAATATATTCTCTTTAATATTGGATGAATGATGATGCTCTCTAAGAGCCCAAAATTTTATGGTGGGCTAAGAAGAAGCCCCCTTGACGTTGGGCCCAAAACAGTGCAACAAGCTAATGATACGGTCCGATAATACTGGGCCTAACCACAATCTCCGTCCTAATTTCCAGGAGCTGTTCACTTGAACGATGTCGTTTCACGGCTTTCTTCCTCCAGAGTCTTCAATATGCCAATTTTGATAACTGCCATGTATGCCTTCGTTTTCAAGTTTGGGCTAAACAATAAATCCAGCG

mRNA sequence

ATGGCCTCCCCAACATTGATAACTCCCACTTCCAAATCCCACGTTCTCGTCCCCCTCAGACCCAAATCACCCGCCGCAACCGCCGCCATTGCCTCCGCCGTCACCACCTCCGCGCAGCAGCCCCGCCGCCGGGAGTTCCTGTCCCTGACGGCCTCTGTTCTCGCTCCGGCGTGGGCCTTGTTCCCTCCGGCGCCGGCGCTGGCCTCGTCCGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATCGGGAAGGTGAGAACGACGATCAACATGGACAAAAACGACCCCAATGTGGCGGCGGCGGTGGCGGAGCTGAGGGAAACTTCCAATTCGTGGGTGGCCAAGTACCGGAAGGAGAAGGCCCTGTTGGCCCGGGCCTCTTTCAGGGACATGTACTCGGCGCTCAACGCCGTCTCCGGCCATTACATAAGCTTTGGCCCGACGGCGCCGATTCCGGCGAAGAGGAAAGCCAGGATTTTGGAAGAGATGGACACTGCTGAGAAGGCTCTGTTGAGAGGAAGATGA

Coding sequence (CDS)

ATGGCCTCCCCAACATTGATAACTCCCACTTCCAAATCCCACGTTCTCGTCCCCCTCAGACCCAAATCACCCGCCGCAACCGCCGCCATTGCCTCCGCCGTCACCACCTCCGCGCAGCAGCCCCGCCGCCGGGAGTTCCTGTCCCTGACGGCCTCTGTTCTCGCTCCGGCGTGGGCCTTGTTCCCTCCGGCGCCGGCGCTGGCCTCGTCCGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATCGGGAAGGTGAGAACGACGATCAACATGGACAAAAACGACCCCAATGTGGCGGCGGCGGTGGCGGAGCTGAGGGAAACTTCCAATTCGTGGGTGGCCAAGTACCGGAAGGAGAAGGCCCTGTTGGCCCGGGCCTCTTTCAGGGACATGTACTCGGCGCTCAACGCCGTCTCCGGCCATTACATAAGCTTTGGCCCGACGGCGCCGATTCCGGCGAAGAGGAAAGCCAGGATTTTGGAAGAGATGGACACTGCTGAGAAGGCTCTGTTGAGAGGAAGATGA

Protein sequence

MASPTLITPTSKSHVLVPLRPKSPAATAAIASAVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Homology
[Close]
BLAST of MC04g_new0022 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.4e-48
Identity = 111/172 (64.53%), Postives = 128/172 (74.42%), Query Frame = 0 

Query: 11  SKSHVLVPLRPK-SPAATAAIASAVTTSAQQPR-----RREFLSL--TASVLAPAWALFP 70
           S S     L+P   P     IAS+V+     PR     RR+FLSL  T+++L  +     
Sbjct: 3   SASATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQFLA 62

Query: 71  PAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRKEKAL 130
           PAP  A+ DEEY+KDTS VI KVR+T++M K DPNVA AVAELRE SNSWVAKYRKEKAL
Sbjct: 63  PAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKAL 122

Query: 131 LARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           L +ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 123 LGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]
BLAST of MC04g_new0022 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 269 bits (687), Expect = 1.62e-89
Identity = 147/176 (83.52%), Postives = 158/176 (89.77%), Query Frame = 0 

Query: 1   MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASAVTTSAQQPRRREFLSLTASVLAPAW 60
           MASPTLITP TSKS  +++PL+PKS  +    A+A TT+    RRREFLSLTASVLAP+W
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSIS----AAATTTTHHYSRRREFLSLTASVLAPSW 60

Query: 61  ALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRK 120
            LFPPAPALASSDEEYVKDT+EVIGKVRTTI MDKNDPNVAAAVAELRE+SNSWVAKYRK
Sbjct: 61  VLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRK 120

Query: 121 EKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 174
           EK+LL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 EKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of MC04g_new0022 vs. NCBI nr
Match: XP_023554625.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268 bits (685), Expect = 3.37e-89
Identity = 148/176 (84.09%), Postives = 156/176 (88.64%), Query Frame = 0 

Query: 1   MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASAVTTSAQQPRRREFLSLTASVLAPAW 60
           MASPTLITP TSKS  ++VPL+PKS    AA     TT+    RRREFLSLTASVLAP+W
Sbjct: 1   MASPTLITPSTSKSQPLIVPLKPKSSITAAAT---TTTTHHYSRRREFLSLTASVLAPSW 60

Query: 61  ALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRK 120
            LFPPAPALASSDEEYVKDT+EVIGKVRTTI MDKNDPNVAAAVAELRE+SNSWVAKYRK
Sbjct: 61  VLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRK 120

Query: 121 EKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 174
           EK+LL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 EKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]
BLAST of MC04g_new0022 vs. NCBI nr
Match: KAG6572353.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011964.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268 bits (684), Expect = 4.79e-89
Identity = 147/176 (83.52%), Postives = 156/176 (88.64%), Query Frame = 0 

Query: 1   MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASAVTTSAQQPRRREFLSLTASVLAPAW 60
           MASPTLITP TSKS  +++PL+PKS    AA     TT+    RRREFLSLTASVLAP+W
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAAT---TTTTHHYSRRREFLSLTASVLAPSW 60

Query: 61  ALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRK 120
            LFPPAPALASSDEEYVKDT+EVIGKVRTTI MDKNDPNVAAAVAELRE+SNSWVAKYRK
Sbjct: 61  VLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRK 120

Query: 121 EKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 174
           EK+LL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 EKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]
BLAST of MC04g_new0022 vs. NCBI nr
Match: XP_038887363.1 (photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida])

HSP 1 Score: 259 bits (661), Expect = 1.33e-85
Identity = 143/176 (81.25%), Postives = 153/176 (86.93%), Query Frame = 0 

Query: 1   MASPTLITP-TSKSHV-LVPLRPKSPAATAAIASAVTTSAQQPRRREFLSLTASVLAPAW 60
           MASPTLITP TSKS    +PL+PKS  + AA A+ V       RRR+FLSLTASVLAP+W
Sbjct: 1   MASPTLITPCTSKSQTPFIPLKPKSTISAAATATTV-------RRRDFLSLTASVLAPSW 60

Query: 61  ALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRK 120
            LFP +PALASSD+EYVKDTSEVIGKVR TI MD+NDPNVAAAVAELRE+SN WVAKYRK
Sbjct: 61  VLFPQSPALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRK 120

Query: 121 EKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 174
           EKALL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 EKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of MC04g_new0022 vs. NCBI nr
Match: XP_004136817.1 (photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN43600.1 hypothetical protein Csa_020553 [Cucumis sativus])

HSP 1 Score: 254 bits (648), Expect = 1.27e-83
Identity = 142/176 (80.68%), Postives = 155/176 (88.07%), Query Frame = 0 

Query: 1   MASPTLITP-TSKSHV-LVPLRPKSPAATAAIASAVTTSAQQPRRREFLSLTASVLAPAW 60
           MASPTLITP TSKS    +PL+PKS      I++AVTT     RRREFLSLTASVLAP++
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKS-----TISAAVTTPTV--RRREFLSLTASVLAPSF 60

Query: 61  ALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRK 120
            LFP +PALA+SD+EYVKDT+EVIGKVRTTI MD+NDPNVAAAVA+LRE+SN WVAKYRK
Sbjct: 61  VLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRK 120

Query: 121 EKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 174
           EKALL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 EKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of MC04g_new0022 vs. ExPASy TrEMBL
Match: A0A6J1HZH1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468326 PE=3 SV=1)

HSP 1 Score: 269 bits (687), Expect = 7.82e-90
Identity = 147/176 (83.52%), Postives = 158/176 (89.77%), Query Frame = 0 

Query: 1   MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASAVTTSAQQPRRREFLSLTASVLAPAW 60
           MASPTLITP TSKS  +++PL+PKS  +    A+A TT+    RRREFLSLTASVLAP+W
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSIS----AAATTTTHHYSRRREFLSLTASVLAPSW 60

Query: 61  ALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRK 120
            LFPPAPALASSDEEYVKDT+EVIGKVRTTI MDKNDPNVAAAVAELRE+SNSWVAKYRK
Sbjct: 61  VLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRK 120

Query: 121 EKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 174
           EK+LL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 EKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of MC04g_new0022 vs. ExPASy TrEMBL
Match: A0A6J1GKW7 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455256 PE=3 SV=1)

HSP 1 Score: 269 bits (687), Expect = 7.82e-90
Identity = 147/176 (83.52%), Postives = 158/176 (89.77%), Query Frame = 0 

Query: 1   MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASAVTTSAQQPRRREFLSLTASVLAPAW 60
           MASPTLITP TSKS  +++PL+PKS  +    A+A TT+    RRREFLSLTASVLAP+W
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSIS----AAATTTTHHYSRRREFLSLTASVLAPSW 60

Query: 61  ALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRK 120
            LFPPAPALASSDEEYVKDT+EVIGKVRTTI MDKNDPNVAAAVAELRE+SNSWVAKYRK
Sbjct: 61  VLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRK 120

Query: 121 EKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 174
           EK+LL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 EKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of MC04g_new0022 vs. ExPASy TrEMBL
Match: A0A0A0K1S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 254 bits (648), Expect = 6.16e-84
Identity = 142/176 (80.68%), Postives = 155/176 (88.07%), Query Frame = 0 

Query: 1   MASPTLITP-TSKSHV-LVPLRPKSPAATAAIASAVTTSAQQPRRREFLSLTASVLAPAW 60
           MASPTLITP TSKS    +PL+PKS      I++AVTT     RRREFLSLTASVLAP++
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKS-----TISAAVTTPTV--RRREFLSLTASVLAPSF 60

Query: 61  ALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRK 120
            LFP +PALA+SD+EYVKDT+EVIGKVRTTI MD+NDPNVAAAVA+LRE+SN WVAKYRK
Sbjct: 61  VLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRK 120

Query: 121 EKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 174
           EKALL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 EKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of MC04g_new0022 vs. ExPASy TrEMBL
Match: A0A5A7SR30 (Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003550 PE=3 SV=1)

HSP 1 Score: 253 bits (647), Expect = 8.75e-84
Identity = 141/176 (80.11%), Postives = 156/176 (88.64%), Query Frame = 0 

Query: 1   MASPTLITP-TSKSHV-LVPLRPKSPAATAAIASAVTTSAQQPRRREFLSLTASVLAPAW 60
           MASPTLITP TSKS    +PL+PKS      I++AVTT     RRR+FLSL+ASVLAP++
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKS-----TISAAVTTPTV--RRRDFLSLSASVLAPSF 60

Query: 61  ALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRK 120
            LFP +PALA+SD+EYVKDT+EVIGKVRTTI MD+NDPNVAAAVA+LRE+SNSWVAKYRK
Sbjct: 61  VLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRK 120

Query: 121 EKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 174
           EKALL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 EKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of MC04g_new0022 vs. ExPASy TrEMBL
Match: A0A1S3C1X2 (photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495525 PE=3 SV=1)

HSP 1 Score: 253 bits (647), Expect = 8.75e-84
Identity = 141/176 (80.11%), Postives = 156/176 (88.64%), Query Frame = 0 

Query: 1   MASPTLITP-TSKSHV-LVPLRPKSPAATAAIASAVTTSAQQPRRREFLSLTASVLAPAW 60
           MASPTLITP TSKS    +PL+PKS      I++AVTT     RRR+FLSL+ASVLAP++
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKS-----TISAAVTTPTV--RRRDFLSLSASVLAPSF 60

Query: 61  ALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRK 120
            LFP +PALA+SD+EYVKDT+EVIGKVRTTI MD+NDPNVAAAVA+LRE+SNSWVAKYRK
Sbjct: 61  VLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRK 120

Query: 121 EKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 174
           EKALL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 EKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of MC04g_new0022 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 191.8 bits (486), Expect = 4.6e-49
Identity = 111/172 (64.53%), Postives = 128/172 (74.42%), Query Frame = 0 

Query: 11  SKSHVLVPLRPK-SPAATAAIASAVTTSAQQPR-----RREFLSL--TASVLAPAWALFP 70
           S S     L+P   P     IAS+V+     PR     RR+FLSL  T+++L  +     
Sbjct: 3   SASATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQFLA 62

Query: 71  PAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSNSWVAKYRKEKAL 130
           PAP  A+ DEEY+KDTS VI KVR+T++M K DPNVA AVAELRE SNSWVAKYRKEKAL
Sbjct: 63  PAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKAL 122

Query: 131 LARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 175
           L +ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 123 LGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]
BLAST of MC04g_new0022 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 44.7 bits (104), Expect = 9.0e-05
Identity = 34/149 (22.82%), Postives = 72/149 (48.32%), Query Frame = 0 

Query: 26  ATAAIASAVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDE---EYVKDTSEVI 85
           A++ +A+   +  Q     E L     V+     LF P     S  E    Y+K   EV+
Sbjct: 51  ASSFMATIEFSGLQAQASEEKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVV 110

Query: 86  GKVRTTINMD-KNDPNVAAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGH 145
             +R ++  + K++     +    +E+   +++ +R +K +    S+ ++ + + A++  
Sbjct: 111 KTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKF 170

Query: 146 YISFGPTAPIPAKRKARILEEMDTAEKAL 171
           Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 171 YSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

The following BLAST results are available for this feature:
BLAST of MC04g_new0022 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LR646.4e-4864.53Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX... [more]
BLAST of MC04g_new0022 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952622.11.62e-8983.52photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ... [more]
XP_023554625.13.37e-8984.09photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp... [more]
KAG6572353.14.79e-8983.52Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyro... [more]
XP_038887363.11.33e-8581.25photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida][more]
XP_004136817.11.27e-8380.68photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN4360... [more]
BLAST of MC04g_new0022 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HZH17.82e-9083.52photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O... [more]
A0A6J1GKW77.82e-9083.52photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata... [more]
A0A0A0K1S26.16e-8480.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1[more]
A0A5A7SR308.75e-8480.11Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3C1X28.75e-8480.11photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN... [more]
BLAST of MC04g_new0022 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03600.14.6e-4964.53photosystem II family protein [more]
AT1G05385.19.0e-0522.82photosystem II 11 kDa protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 16..170
e-value: 1.1E-33
score: 116.5
IPR025585Photosystem II Pbs27PANTHERPTHR34041PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..174
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 41..170
score: 23.794437
IPR038450Photosystem II Pbs27 superfamilyGENE3D1.20.58.810Photosystem II Pbs27coord: 69..174
e-value: 5.2E-40
score: 138.1
NoneNo IPR availablePANTHERPTHR34041:SF1PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g_new0022.1MC04g_new0022.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071484 cellular response to light intensity
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010206 photosystem II repair
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009523 photosystem II