MC04g_new0012 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g_new0012
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC04: 723504 .. 725231 (-)
RNA-Seq ExpressionMC04g_new0012
SyntenyMC04g_new0012
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAACAGACTAAAAACCTCGTCGTGGCCGGCGAGATTGACTTTCTCCTTCTTGAAGACAGATGTGTCAAAATCGAGCGAAGTTAAGGGCTTAATCGCAGGCACGGACACCATGCGAGCACCAAGAGCCGAGCCGTCGGCATTAGCACCACTGACGCCAACAGCCTTGAGAGCCTTCGATCCCATGGAAGAAGATGACGACAAGAACCCTAAGCTGGCCGGAGCCGGGGGCTTGAGAGCAGCCTTCTTTAGGGTTTTGGATGATGAGGCTGAGATAGCGGGGGAGAAAGATGTGGCGGCCGCCATTGATGAGTCAGCGAGAAGTGGGGATGAGCAACAAAGTGGAGATTACAGGGTTTTAATAGGGCCTGAAGCTGCGCATTCTAACGATCGTAAGTCTCGCGTAAAATATCCACCATCCACGTGTCAACTTTACGTTTCGTGAAATGATAAAATATCAATAAAGTAATATGTAAAAAGTTATCAGAGTATAGCATATGTCAATTATACCACAAAAATGAAATAAAAGTTACAGTTCGAATACAGAAATACAATTGTTTCAAAAATTAAATTAAATAATATATTATTCAACATTGATTTCAACCTTGGAATAATGAGCATTTAATAGTGTTTATTTTTTAGGTTATAACTTATCAGATTCATTTCAAAATAATAATAATAATAATAATTCGGTTAAAAATCACTTTTAGTCCCTCAACTTAAGTTTGCAACAATTTAGTCCTTGAACTTTAATATATAACAATTTAACCATTGTAATTTAAGTTGGTAACGATTTAGTCCTTACCTTAAATTTTTTTTTTGTTAAGTTTCTTATATATATAGATAGATAAACCAAAAAGAGACGAAATATGTTTGTAACTAGAAATATTAAATTGTTATATGATAAAATTTAACACTTAATTATAATAAAAAAATTTACAATAAGAACTAAATTATTACAAATTCTGAACTAAAGGATTAAATCATTACAAGTTAAAGTTTAGATACTAAATTGTTACTTTAGTGTAAGTATAGAGACTAAATCATTACAAACAAAAATTTAGGGACTAAATTGTTACTTTAGTGAGAGTACATGGACTAAATGTATTTTTTAACCTACCAATAATACGAAAAATGGTGGAATTTTGTTTGGACAATTAAAATTCCGCCTAAAGTAAAGATGCTTCTTGGAGAGGGTTTACTGAGTGTGTGTCTACTTTGGGGAATCTAGCAAAGAAAGGGATTGATGCAAATCCGTTTTGACTAATAGGTAGAAAGCATGTTGAAACTTCAGATCATATTCTTTTACTATATGGCACAGTTTGTTACCTCAGGCTATTTTGGAAATTCTGTCCAAGCAAGATTGATATATTTGATGGAGACGCTTTGTAAGTCAGATTTTGAGTTGGTTGGAACTCGAGTTTGGGCAATCTGGAATGATCGAAATGCGGTCAGAGTCCACAAATAAATTATGGATGTTAAGATCATAAGTGATTTGATTCTTACCGATGTGAAGGAGTTCAAAACCAGTCATGGTTCACCTCGTGCTGGTAGCAATATAAACCCCCCTCATTCTGTTGAAAACCTGTGGTCACCTTTACCGGTAGGCTGGGTTAAGTTTAATGTAGACACTGTCGGTAAGAAGAACCATGCAAGAACTAGAGTAGGTGTTGGTGGTAGAAATAATCAAGGGAAAATCATAGCAGCAGCTTCCCGTAGTGTTTAG

mRNA sequence

ATGAACAACAGACTAAAAACCTCGTCGTGGCCGGCGAGATTGACTTTCTCCTTCTTGAAGACAGATGTGTCAAAATCGAGCGAAGTTAAGGGCTTAATCGCAGGCACGGACACCATGCGAGCACCAAGAGCCGAGCCGTCGGCATTAGCACCACTGACGCCAACAGCCTTGAGAGCCTTCGATCCCATGGAAGAAGATGACGACAAGAACCCTAAGCTGGCCGGAGCCGGGGGCTTGAGAGCAGCCTTCTTTAGGGTTTTGGATGATGAGGCTGAGATAGCGGGGGAGAAAGATGTGGCGGCCGCCATTGATGAGTCAGCGAGAAGTGGGGATGAGCAACAAAGTGGAGATTACAGGGTTTTAATAGGGCCTGAAGCTGCGCATTCTAACGATCGCTATTTTGGAAATTCTGTCCAAGCAAGATTGATATATTTGATGGAGACGCTTTGTAAGTCAGATTTTGAGTTGGTTGGAACTCGAGTTTGGGCAATCTGGAATGATCGAAATGCGGAGTTCAAAACCAGTCATGGTTCACCTCGTGCTGGTAGCAATATAAACCCCCCTCATTCTGTTGAAAACCTGTGGTCACCTTTACCGGTAGGCTGGGTTAAGTTTAATGTAGACACTGTCGGTAAGAAGAACCATGCAAGAACTAGAGTAGGTGTTGGTGGTAGAAATAATCAAGGGAAAATCATAGCAGCAGCTTCCCGTAGTGTTTAG

Coding sequence (CDS)

ATGAACAACAGACTAAAAACCTCGTCGTGGCCGGCGAGATTGACTTTCTCCTTCTTGAAGACAGATGTGTCAAAATCGAGCGAAGTTAAGGGCTTAATCGCAGGCACGGACACCATGCGAGCACCAAGAGCCGAGCCGTCGGCATTAGCACCACTGACGCCAACAGCCTTGAGAGCCTTCGATCCCATGGAAGAAGATGACGACAAGAACCCTAAGCTGGCCGGAGCCGGGGGCTTGAGAGCAGCCTTCTTTAGGGTTTTGGATGATGAGGCTGAGATAGCGGGGGAGAAAGATGTGGCGGCCGCCATTGATGAGTCAGCGAGAAGTGGGGATGAGCAACAAAGTGGAGATTACAGGGTTTTAATAGGGCCTGAAGCTGCGCATTCTAACGATCGCTATTTTGGAAATTCTGTCCAAGCAAGATTGATATATTTGATGGAGACGCTTTGTAAGTCAGATTTTGAGTTGGTTGGAACTCGAGTTTGGGCAATCTGGAATGATCGAAATGCGGAGTTCAAAACCAGTCATGGTTCACCTCGTGCTGGTAGCAATATAAACCCCCCTCATTCTGTTGAAAACCTGTGGTCACCTTTACCGGTAGGCTGGGTTAAGTTTAATGTAGACACTGTCGGTAAGAAGAACCATGCAAGAACTAGAGTAGGTGTTGGTGGTAGAAATAATCAAGGGAAAATCATAGCAGCAGCTTCCCGTAGTGTTTAG

Protein sequence

MNNRLKTSSWPARLTFSFLKTDVSKSSEVKGLIAGTDTMRAPRAEPSALAPLTPTALRAFDPMEEDDDKNPKLAGAGGLRAAFFRVLDDEAEIAGEKDVAAAIDESARSGDEQQSGDYRVLIGPEAAHSNDRYFGNSVQARLIYLMETLCKSDFELVGTRVWAIWNDRNAEFKTSHGSPRAGSNINPPHSVENLWSPLPVGWVKFNVDTVGKKNHARTRVGVGGRNNQGKIIAAASRSV
Homology
BLAST of MC04g_new0012 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 6.50e-19
Identity = 61/149 (40.94%), Postives = 80/149 (53.69%), Query Frame = 0

Query: 118 YRVLIGPEAAHSNDRYFGNSVQARLIYLMETLCKSDFELVGTRVWAIWNDRNA------- 177
           + +L+ P+A    D  F NSVQ  L+YL+E+L   DF+LVG  VWAIWNDRNA       
Sbjct: 52  WNILL-PQAFPQCD--FNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRNAIRMQRQI 111

Query: 178 ---------------EFKT----SHGSPR----AGSNINPPHSVENLWSPLPVGWVKFNV 236
                          +F+     S G  R    A SN     ++EN WSP P GW+K NV
Sbjct: 112 PDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSN---DRTIENYWSPPPAGWIKINV 171

BLAST of MC04g_new0012 vs. NCBI nr
Match: GAU27076.1 (hypothetical protein TSUD_103850 [Trifolium subterraneum])

HSP 1 Score: 62.0 bits (149), Expect = 2.11e-08
Identity = 48/100 (48.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 4   RLKTSSWPARLTFSFLKTDVSKSSEVKGLIAGTDTMRAPRAEPSALAPLTPTALRAFDPM 63
           R +TSS PARLTFSFLK+DV KSSE    IAGT+TMR  R E +      P   R    +
Sbjct: 10  RERTSSCPARLTFSFLKSDVLKSSEAGIFIAGTETMREERDEATM-----PVHRRRVRDL 69

Query: 64  EEDDDKNPKLAGAGGLRAAFFRVLDDEAEIAGEKDVAAAI 103
           EE++  + +L   G L      VL  E  IAGE DV AAI
Sbjct: 70  EEEEYWSARLV-MGKLLVVIGLVLISE--IAGEHDVMAAI 101

BLAST of MC04g_new0012 vs. NCBI nr
Match: XP_006473914.2 (uncharacterized protein LOC102629934 [Citrus sinensis])

HSP 1 Score: 56.6 bits (135), Expect = 1.87e-05
Identity = 38/108 (35.19%), Postives = 54/108 (50.00%), Query Frame = 0

Query: 151 KSDFELVGTRVWAIWNDRN-AEFKT----SHGSPRAGSNI--------------NPPHS- 210
           K++ EL+    W+IW+ RN A FK     SH S  A   +              +PP S 
Sbjct: 42  KAEMELIVAVCWSIWHSRNLAIFKNKREDSHLSVAAAEALVQSYKRIQMPQMSKSPPTSL 101

Query: 211 -VENLWSPLPVGWVKFNVDTVGKKNHARTRVGVGGRNNQGKIIAAASR 237
            ++  WS  P GW K NVD   K    RT +G+  RN++GK++AAA +
Sbjct: 102 AIQQKWSYPPEGWFKVNVDAAVKMEQQRTGLGIVIRNSEGKVMAAAMK 149

BLAST of MC04g_new0012 vs. NCBI nr
Match: XP_023911187.1 (uncharacterized protein LOC112022795 [Quercus suber])

HSP 1 Score: 56.6 bits (135), Expect = 2.53e-05
Identity = 37/117 (31.62%), Postives = 53/117 (45.30%), Query Frame = 0

Query: 145 LMETLCKSDFELVGTRVWAIWNDRNA----------------------EFKTSHGSPRAG 204
           +ME     D E + T  W +WN+RNA                      EF+T   S    
Sbjct: 171 VMEAKPAQDLEALATTAWFLWNNRNAVRHGETSRIALQIFEASRLYLAEFQTHCSS---- 230

Query: 205 SNINPPHSVENLWSPLPVGWVKFNVDTVGKKNHARTRVGVGGRNNQGKIIAAASRSV 239
           SN +  H V  LW P P+ W K NVD    K   +  +GV  RN++G+I+ A S+++
Sbjct: 231 SNAHQSH-VPTLWRPPPLRWYKTNVDVAAFKEQGQYGIGVVVRNDKGQIMGALSKTL 282

BLAST of MC04g_new0012 vs. NCBI nr
Match: RWW00281.1 (hypothetical protein GW17_00036758 [Ensete ventricosum] >RWW73817.1 hypothetical protein BHE74_00018272 [Ensete ventricosum])

HSP 1 Score: 54.3 bits (129), Expect = 2.60e-05
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 6  KTSSWPARLTFSFLKTDVSKSSEVKGLIA-GTDTMRAPRAEPSALAPLTPTA-LRAFDPM 65
          +TS+WPAR+ FS LKT+VSKSS+  G    GTDT+RAP    +AL P  P A       M
Sbjct: 7  RTSTWPARVIFSLLKTEVSKSSDGGGFSTEGTDTIRAPW---TALRPPRPPAGTTCRSDM 66

Query: 66 EEDD-----DKNPKLAGAG 77
          E+DD     D   K+ GAG
Sbjct: 67 EDDDSEAAEDPRTKVPGAG 82

BLAST of MC04g_new0012 vs. ExPASy TrEMBL
Match: A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.15e-19
Identity = 61/149 (40.94%), Postives = 80/149 (53.69%), Query Frame = 0

Query: 118 YRVLIGPEAAHSNDRYFGNSVQARLIYLMETLCKSDFELVGTRVWAIWNDRNA------- 177
           + +L+ P+A    D  F NSVQ  L+YL+E+L   DF+LVG  VWAIWNDRNA       
Sbjct: 52  WNILL-PQAFPQCD--FNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRNAIRMQRQI 111

Query: 178 ---------------EFKT----SHGSPR----AGSNINPPHSVENLWSPLPVGWVKFNV 236
                          +F+     S G  R    A SN     ++EN WSP P GW+K NV
Sbjct: 112 PDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSN---DRTIENYWSPPPAGWIKINV 171

BLAST of MC04g_new0012 vs. ExPASy TrEMBL
Match: A0A2Z6M536 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_103850 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.02e-08
Identity = 48/100 (48.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 4   RLKTSSWPARLTFSFLKTDVSKSSEVKGLIAGTDTMRAPRAEPSALAPLTPTALRAFDPM 63
           R +TSS PARLTFSFLK+DV KSSE    IAGT+TMR  R E +      P   R    +
Sbjct: 10  RERTSSCPARLTFSFLKSDVLKSSEAGIFIAGTETMREERDEATM-----PVHRRRVRDL 69

Query: 64  EEDDDKNPKLAGAGGLRAAFFRVLDDEAEIAGEKDVAAAI 103
           EE++  + +L   G L      VL  E  IAGE DV AAI
Sbjct: 70  EEEEYWSARLV-MGKLLVVIGLVLISE--IAGEHDVMAAI 101

BLAST of MC04g_new0012 vs. ExPASy TrEMBL
Match: A0A426ZYK5 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00017098 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.26e-05
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 6  KTSSWPARLTFSFLKTDVSKSSEVKGLIA-GTDTMRAPRAEPSALAPLTPTA-LRAFDPM 65
          +TS+WPAR+ FS LKT+VSKSS+  G    GTDT+RAP    +AL P  P A       M
Sbjct: 7  RTSTWPARVIFSLLKTEVSKSSDGGGFSTEGTDTIRAPW---TALRPPRPPAGTTCRSDM 66

Query: 66 EEDD-----DKNPKLAGAG 77
          E+DD     D   K+ GAG
Sbjct: 67 EDDDSEAAEDPRTKVPGAG 82

BLAST of MC04g_new0012 vs. ExPASy TrEMBL
Match: A0A444DQ81 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00036758 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.26e-05
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 6  KTSSWPARLTFSFLKTDVSKSSEVKGLIA-GTDTMRAPRAEPSALAPLTPTA-LRAFDPM 65
          +TS+WPAR+ FS LKT+VSKSS+  G    GTDT+RAP    +AL P  P A       M
Sbjct: 7  RTSTWPARVIFSLLKTEVSKSSDGGGFSTEGTDTIRAPW---TALRPPRPPAGTTCRSDM 66

Query: 66 EEDD-----DKNPKLAGAG 77
          E+DD     D   K+ GAG
Sbjct: 67 EDDDSEAAEDPRTKVPGAG 82

BLAST of MC04g_new0012 vs. ExPASy TrEMBL
Match: A0A7N2L839 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.61e-05
Identity = 32/116 (27.59%), Postives = 50/116 (43.10%), Query Frame = 0

Query: 142 LIYLMETLCKSDFELVGTRVWAIWNDRNAEFKTSHGSPRAGSN----------------- 201
           L+  M+ + K   EL+ T  W +W +RN   K+  GSPR  S                  
Sbjct: 44  LVIFMQHVGKDMLELIATSTWCMWCNRN---KSRLGSPRQSSEEMIYKAQTLLADFQVAH 103

Query: 202 ---INPPHSVENLWSPLPVGWVKFNVDTVGKKNHARTRVGVGGRNNQGKIIAAASR 237
              + P  + ++ W+P    W K N D    KN     +GV  RN++G ++ A S+
Sbjct: 104 LRRLQPKTAEDSRWTPPSFPWYKVNTDATVFKNSKSVGIGVVVRNHEGSVLTALSK 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022145060.16.50e-1940.94uncharacterized protein LOC111014578 [Momordica charantia][more]
GAU27076.12.11e-0848.00hypothetical protein TSUD_103850 [Trifolium subterraneum][more]
XP_006473914.21.87e-0535.19uncharacterized protein LOC102629934 [Citrus sinensis][more]
XP_023911187.12.53e-0531.62uncharacterized protein LOC112022795 [Quercus suber][more]
RWW00281.12.60e-0548.10hypothetical protein GW17_00036758 [Ensete ventricosum] >RWW73817.1 hypothetical... [more]
Match NameE-valueIdentityDescription
A0A6J1CTE33.15e-1940.94uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A2Z6M5361.02e-0848.00Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_103850 PE=4 SV... [more]
A0A426ZYK51.26e-0548.10Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00017098 PE=4 SV=1[more]
A0A444DQ811.26e-0548.10Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00036758 PE=4 SV=1[more]
A0A7N2L8396.61e-0527.59RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g_new0012.1MC04g_new0012.1mRNA