MC04g0981 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g0981
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPMD domain-containing protein
LocationMC04: 17738117 .. 17738251 (+)
RNA-Seq ExpressionMC04g0981
SyntenyMC04g0981
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CACGTGCCTTTGGAGGCCGTGAGGCCCTTACTGCTGGTCGGCAATCGAGCGATGGATGCATGTGTCGTTTCTAACCCGGATTTTGACTTAGAGGCATTCAATCATAATCCAGCGCACAGTAGCTTCGCGCCACTG

mRNA sequence

CACGTGCCTTTGGAGGCCGTGAGGCCCTTACTGCTGGTCGGCAATCGAGCGATGGATGCATGTGTCGTTTCTAACCCGGATTTTGACTTAGAGGCATTCAATCATAATCCAGCGCACAGTAGCTTCGCGCCACTG

Coding sequence (CDS)

CACGTGCCTTTGGAGGCCGTGAGGCCCTTACTGCTGGTCGGCAATCGAGCGATGGATGCATGTGTCGTTTCTAACCCGGATTTTGACTTAGAGGCATTCAATCATAATCCAGCGCACAGTAGCTTCGCGCCACTG

Protein sequence

HVPLEAVRPLLLVGNRAMDACVVSNPDFDLEAFNHNPAHSSFAPL
Homology
BLAST of MC04g0981 vs. NCBI nr
Match: OPH47798.1 (hypothetical protein B4U81_25600, partial [Vibrio campbellii])

HSP 1 Score: 78.6 bits (192), Expect = 5.65e-17
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 1   HVPLEAVRPLLLVGNRAMDACVVSNPDFDLEAFNHNPAHSSFAPL 45
           HVPL AVRPLLLVG RA  ACV S+PD DLEAF+HNPAH SFAPL
Sbjct: 76  HVPLGAVRPLLLVGKRAAGACVASSPDSDLEAFSHNPAHGSFAPL 120

BLAST of MC04g0981 vs. NCBI nr
Match: GAV91288.1 (hypothetical protein CFOL_v3_34685, partial [Cephalotus follicularis])

HSP 1 Score: 75.9 bits (185), Expect = 4.15e-16
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 1   HVPLEAVRPLLLVGNRAMDACVVSNPDFDLEAFNHNPAHSSFAPL 45
           HVPL  +RPLLLVG RA  ACV S+PD DLEAF+HNPAH SFAPL
Sbjct: 58  HVPLGTLRPLLLVGKRAAGACVASSPDSDLEAFSHNPAHGSFAPL 102

BLAST of MC04g0981 vs. NCBI nr
Match: GAV78408.1 (hypothetical protein CFOL_v3_21876, partial [Cephalotus follicularis])

HSP 1 Score: 73.2 bits (178), Expect = 4.77e-15
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 1   HVPLEAVRPLLLVGNRAMDACVVSNPDFDLEAFNHNPAHSSFAPL 45
           HVPL  +RPLLLVG+RA+  C+ S+PD DLEAF+HNP H SFAPL
Sbjct: 58  HVPLGTLRPLLLVGSRAVGTCIASSPDSDLEAFSHNPPHGSFAPL 102

BLAST of MC04g0981 vs. NCBI nr
Match: KAF7112645.1 (hypothetical protein RHSIM_RhsimUnG0208900 [Rhododendron simsii])

HSP 1 Score: 72.8 bits (177), Expect = 5.68e-15
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1  HVPLEAVRPLLLVGNRAMDACVVSNPDFDLEAFNHNPAHSSFAPL 45
          HVPL A  PLLLVG RA  AC+ S+PD DLEAF+HNPAH SFAPL
Sbjct: 51 HVPLGAKWPLLLVGKRAAGACIASSPDSDLEAFSHNPAHGSFAPL 95

BLAST of MC04g0981 vs. NCBI nr
Match: KAF7112644.1 (hypothetical protein RHSIM_RhsimUnG0208400 [Rhododendron simsii])

HSP 1 Score: 72.8 bits (177), Expect = 5.06e-14
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1  HVPLEAVRPLLLVGNRAMDACVVSNPDFDLEAFNHNPAHSSFAPL 45
          HVPL A  PLLLVG RA  AC+ S+PD DLEAF+HNPAH SFAPL
Sbjct: 19 HVPLGAKWPLLLVGKRAAGACIASSPDSDLEAFSHNPAHGSFAPL 63

BLAST of MC04g0981 vs. ExPASy TrEMBL
Match: A0A1Q3DGA9 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34685 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.01e-16
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 1   HVPLEAVRPLLLVGNRAMDACVVSNPDFDLEAFNHNPAHSSFAPL 45
           HVPL  +RPLLLVG RA  ACV S+PD DLEAF+HNPAH SFAPL
Sbjct: 58  HVPLGTLRPLLLVGKRAAGACVASSPDSDLEAFSHNPAHGSFAPL 102

BLAST of MC04g0981 vs. ExPASy TrEMBL
Match: A0A1Q3CE62 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21876 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.31e-15
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 1   HVPLEAVRPLLLVGNRAMDACVVSNPDFDLEAFNHNPAHSSFAPL 45
           HVPL  +RPLLLVG+RA+  C+ S+PD DLEAF+HNP H SFAPL
Sbjct: 58  HVPLGTLRPLLLVGSRAVGTCIASSPDSDLEAFSHNPPHGSFAPL 102

BLAST of MC04g0981 vs. ExPASy TrEMBL
Match: A0A0V0XEH6 (Uncharacterized protein (Fragment) OS=Trichinella patagoniensis OX=990121 GN=T12_13365 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.79e-14
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 4  LEAVRPLLLVGNRAMDACVVSNPDFDLEAFNHNPAHSSFAPL 45
          L A RPLL VGNRA  ACV S+PD DLEAF+HNPAH SFAPL
Sbjct: 1  LGAGRPLLRVGNRAAGACVASSPDSDLEAFSHNPAHGSFAPL 42

BLAST of MC04g0981 vs. ExPASy TrEMBL
Match: A0A1Q3BLS7 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_12488 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.37e-14
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 1  HVPLEAVRPLLLVGNRAMDACVVSNPDFDLEAFNHNPAHSSFAPL 45
          HVPL  +RPLLLVG RA+ AC  S+ D DLE F+HNPAH SFAPL
Sbjct: 51 HVPLGTLRPLLLVGKRAVGACFASSLDSDLETFSHNPAHGSFAPL 95

BLAST of MC04g0981 vs. ExPASy TrEMBL
Match: A0A7C9CPI8 (Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.22e-13
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 1   HVPLEAVRPLLLVGNRAMDACVVSNPDFDLEAFNHNPAHSSFAPL 45
           HVPL A  PLL VGNRA  A V S+PD DLEAF+HNPAH SFAPL
Sbjct: 57  HVPLGARGPLLRVGNRAAGARVASSPDSDLEAFSHNPAHGSFAPL 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
OPH47798.15.65e-1780.00hypothetical protein B4U81_25600, partial [Vibrio campbellii][more]
GAV91288.14.15e-1675.56hypothetical protein CFOL_v3_34685, partial [Cephalotus follicularis][more]
GAV78408.14.77e-1568.89hypothetical protein CFOL_v3_21876, partial [Cephalotus follicularis][more]
KAF7112645.15.68e-1573.33hypothetical protein RHSIM_RhsimUnG0208900 [Rhododendron simsii][more]
KAF7112644.15.06e-1473.33hypothetical protein RHSIM_RhsimUnG0208400 [Rhododendron simsii][more]
Match NameE-valueIdentityDescription
A0A1Q3DGA92.01e-1675.56Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3... [more]
A0A1Q3CE622.31e-1568.89Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3... [more]
A0A0V0XEH64.79e-1476.19Uncharacterized protein (Fragment) OS=Trichinella patagoniensis OX=990121 GN=T12... [more]
A0A1Q3BLS76.37e-1468.89Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_12488 PE=4... [more]
A0A7C9CPI81.22e-1373.33Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g0981.1MC04g0981.1mRNA