MC04g0887 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0887
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RNase H domain-containing protein
Location	MC04: 15848274 .. 15848492 (+)
RNA-Seq Expression	MC04g0887
Synteny	MC04g0887

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCATACTACTTGGTACCCTGCAAAAGAGGGGGTCTTTAAATTAAACACAGATGCTTCTTTTTTCTCGACTGATTTTAATGCAGGTTTGAGAATCATTATAAGAGATCATAGAGGTCAAGTAATAGTTTCGGCTACAAAATACTTGGGGAATGTAGCATCCGTGGATGATGTTGAAGAGCTTGCAGCAGTGGAAGGCCTTCGTGTTGCGATGGAAATG

mRNA sequence

AATCATACTACTTGGTACCCTGCAAAAGAGGGGGTCTTTAAATTAAACACAGATGCTTCTTTTTTCTCGACTGATTTTAATGCAGGTTTGAGAATCATTATAAGAGATCATAGAGGTCAAGTAATAGTTTCGGCTACAAAATACTTGGGGAATGTAGCATCCGTGGATGATGTTGAAGAGCTTGCAGCAGTGGAAGGCCTTCGTGTTGCGATGGAAATG

Coding sequence (CDS)

AATCATACTACTTGGTACCCTGCAAAAGAGGGGGTCTTTAAATTAAACACAGATGCTTCTTTTTTCTCGACTGATTTTAATGCAGGTTTGAGAATCATTATAAGAGATCATAGAGGTCAAGTAATAGTTTCGGCTACAAAATACTTGGGGAATGTAGCATCCGTGGATGATGTTGAAGAGCTTGCAGCAGTGGAAGGCCTTCGTGTTGCGATGGAAATG

Protein sequence

NHTTWYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAVEGLRVAMEM

Homology

[Close]

BLAST of MC04g0887 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 112 bits (279), Expect = 1.40e-28
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   NHTTWYPAKEGVFKLNTDASFFSTDFNAGLR-IIIRDHRGQVIVSATKYLGNVASVDDVE 60
           NHT W PA+EGVFKL TDASF S DFNAGL  IIIRDHRGQV+ SATKYL +VASVDD E
Sbjct: 86  NHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDHRGQVLASATKYLEHVASVDDAE 145

Query: 61  ELAAVEGLRVAME 72
            LAAVEGLRVAME
Sbjct: 146 ALAAVEGLRVAME 158

[Close]

BLAST of MC04g0887 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 7.01e-17
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 5    WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAV 64
            W P  EG++K+NTDASF ++D +AGL III + RGQV+ +ATKYL N+ SVD  E +AAV
Sbjct: 991  WQPPDEGIYKINTDASFLASDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAV 1050

Query: 65   EGLRVAMEM 73
            EGL++A E+
Sbjct: 1051 EGLQLASEI 1059

[Close]

BLAST of MC04g0887 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 2.40e-16
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 5   WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAV 64
           W P  + ++K+NTDASF ++D +AGL IIIR+ RGQV+ SATKYL N+ SVD  E + AV
Sbjct: 34  WLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVAV 93

Query: 65  EGLRVAMEM 73
           EGL++A ++
Sbjct: 94  EGLQLASKI 102

[Close]

BLAST of MC04g0887 vs. NCBI nr
Match: XP_042988669.1 (uncharacterized protein LOC122316201 [Carya illinoinensis])

HSP 1 Score: 62.8 bits (151), Expect = 1.93e-09
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1   NHTT-WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVE 60
           NH   W+P   G  KLN D + FS  F+AG+ +I+RDH G V+V+A+K    V+SV+ +E
Sbjct: 90  NHVVYWHPPPIGCLKLNVDGATFSDSFSAGVGVILRDHNGDVVVAASKVKREVSSVEFIE 149

Query: 61  ELAAVEGLRVAME 72
            +  + GL++  +
Sbjct: 150 AITLLRGLQLCAQ 162

[Close]

BLAST of MC04g0887 vs. NCBI nr
Match: XP_042968982.1 (uncharacterized protein LOC122301652 [Carya illinoinensis])

HSP 1 Score: 60.1 bits (144), Expect = 5.00e-09
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 1   NHTT-WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVE 60
           NH   W+P   G  KLN D + FS  F+AG+ +I+RDH G V+V+ATK    V+    +E
Sbjct: 86  NHVVYWHPPPIGCLKLNIDGATFSDSFSAGVGVILRDHNGDVVVAATKVESEVSLTVFIE 145

Query: 61  ELAAVEGLRVAME 72
            +A + G+++ ++
Sbjct: 146 AIALLRGIQLCVQ 158

[Close]

BLAST of MC04g0887 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 6.80e-29
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   NHTTWYPAKEGVFKLNTDASFFSTDFNAGLR-IIIRDHRGQVIVSATKYLGNVASVDDVE 60
           NHT W PA+EGVFKL TDASF S DFNAGL  IIIRDHRGQV+ SATKYL +VASVDD E
Sbjct: 86  NHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDHRGQVLASATKYLEHVASVDDAE 145

Query: 61  ELAAVEGLRVAME 72
            LAAVEGLRVAME
Sbjct: 146 ALAAVEGLRVAME 158

[Close]

BLAST of MC04g0887 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.39e-17
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 5    WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAV 64
            W P  EG++K+NTDASF ++D +AGL III + RGQV+ +ATKYL N+ SVD  E +AAV
Sbjct: 991  WQPPDEGIYKINTDASFLASDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAV 1050

Query: 65   EGLRVAMEM 73
            EGL++A E+
Sbjct: 1051 EGLQLASEI 1059

[Close]

BLAST of MC04g0887 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.16e-16
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 5   WYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAAV 64
           W P  + ++K+NTDASF ++D +AGL IIIR+ RGQV+ SATKYL N+ SVD  E + AV
Sbjct: 34  WLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVAV 93

Query: 65  EGLRVAMEM 73
           EGL++A ++
Sbjct: 94  EGLQLASKI 102

[Close]

BLAST of MC04g0887 vs. ExPASy TrEMBL
Match: A0A1E5W9V9 (Uncharacterized protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0004812 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.72e-09
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 2   HTTWYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEEL 61
           H++W P ++G  K+NTDASF    F+ G   +IRD  G+V+ +  ++  NV+ V  +E L
Sbjct: 73  HSSWTPPEQGWVKVNTDASFLEASFSGGSGCVIRDSCGEVLAAEARWHNNVSDVLTMEAL 132

Query: 62  AAVEGLRVAM 71
           AA  GL VA+
Sbjct: 133 AARNGLLVAV 142

[Close]

BLAST of MC04g0887 vs. ExPASy TrEMBL
Match: A0A3L6S0G2 (RNase H domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM09G13790 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.93e-09
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 4   TWYPAKEGVFKLNTDASFFSTDFNAGLRIIIRDHRGQVIVSATKYLGNVASVDDVEELAA 63
           TW    EG  K+NTDA+F +        ++IRDH G V+ +AT++LG+V  V   E LAA
Sbjct: 71  TWRRPDEGWVKVNTDAAFDAAMCTGSAGVVIRDHAGVVLAAATRWLGSVPDVLTAEALAA 130

Query: 64  VEGLRVAME 72
            EGL + +E
Sbjct: 131 REGLELTLE 139

The following BLAST results are available for this feature:

BLAST of MC04g0887 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g0887 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139684.1	1.40e-28	80.82	uncharacterized protein LOC111010533 [Momordica charantia]	[more]
XP_022150918.1	7.01e-17	57.97	uncharacterized protein LOC111018954 [Momordica charantia]	[more]
XP_022140628.1	2.40e-16	55.07	uncharacterized protein LOC111011237 [Momordica charantia]	[more]
XP_042988669.1	1.93e-09	39.73	uncharacterized protein LOC122316201 [Carya illinoinensis]	[more]
XP_042968982.1	5.00e-09	38.36	uncharacterized protein LOC122301652 [Carya illinoinensis]	[more]

BLAST of MC04g0887 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDQ4	6.80e-29	80.82	uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1DAR4	3.39e-17	57.97	uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1CIF1	1.16e-16	55.07	uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A1E5W9V9	5.72e-09	41.43	Uncharacterized protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0004812...	[more]
A0A3L6S0G2	8.93e-09	43.48	RNase H domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM09G137...	[more]

BLAST of MC04g0887 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 16..72 e-value: 3.3E-8 score: 33.4
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 3..73
None	No IPR available	PANTHER	PTHR47074:SF37	PROTEIN, PUTATIVE-RELATED	coord: 3..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0887.1	MC04g0887.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity