MC04g0417 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0417
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ribosomal protein L16
Location	MC04: 3294951 .. 3295235 (+)
RNA-Seq Expression	MC04g0417
Synteny	MC04g0417

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGAAATATAGTAAATATTGTAAAGGCAAATGTAGTAGGGGTTGCAAACCAGACGGTACACAACTTGGTTTTGGAAGATATGACACTAAAAGTTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCGGATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCATGTGTCCACGGGA

mRNA sequence

ACGAAATATAGTAAATATTGTAAAGGCAAATGTAGTAGGGGTTGCAAACCAGACGGTACACAACTTGGTTTTGGAAGATATGACACTAAAAGTTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCGGATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCATGTGTCCACGGGA

Coding sequence (CDS)

ACGAAATATAGTAAATATTGTAAAGGCAAATGTAGTAGGGGTTGCAAACCAGACGGTACACAACTTGGTTTTGGAAGATATGACACTAAAAGTTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCGGATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCATGTGTCCACGGGA

Protein sequence

TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

Homology

[Close]

BLAST of MC04g0417 vs. ExPASy Swiss-Prot
Match: Q04715 (60S ribosomal protein L16, mitochondrial OS=Petunia hybrida OX=4102 GN=RPL16 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.6e-45
Identity = 89/103 (86.41%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAII--------GQ 60
           TKYSKY KG+CSRGCKPDGTQLGFGRY TKSCRAGRLSYRAIEAARRAII        GQ
Sbjct: 34  TKYSKYRKGRCSRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGHFHRAMSGQ 93

Query: 61  FRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 96
           FRRNGKIWVRVLAD+PITGKPTEVRMGRGKGNPTGWIA VS G
Sbjct: 94  FRRNGKIWVRVLADIPITGKPTEVRMGRGKGNPTGWIARVSRG 136

[Close]

BLAST of MC04g0417 vs. ExPASy Swiss-Prot
Match: Q95747 (60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL16 PE=1 SV=3)

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-43
Identity = 86/103 (83.50%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAII--------GQ 60
           TKYSKY KG+CSRGCKPDGT+LGFGRY  KSC+AG LSYRAIEAARRAII        GQ
Sbjct: 42  TKYSKYRKGRCSRGCKPDGTKLGFGRYGIKSCKAGCLSYRAIEAARRAIIGHFHRAMSGQ 101

Query: 61  FRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 96
           FRRNGKIWVRV ADLPITGKPTEVRMGRGKGNPTGWIA VSTG
Sbjct: 102 FRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTG 144

[Close]

BLAST of MC04g0417 vs. ExPASy Swiss-Prot
Match: P46801 (60S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL16 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42
Identity = 86/103 (83.50%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAII--------GQ 60
           TKYSKY K +CSRGC+PDGTQLGFGRY TKSCRAGRLSYRAIEAARRA I        GQ
Sbjct: 48  TKYSKYSKCRCSRGCEPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRATIGQFHRAMSGQ 107

Query: 61  FRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 96
           FRRN KIWVRVLADLPITGKP EVRMGRGKGNPTGWIA VSTG
Sbjct: 108 FRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTG 150

[Close]

BLAST of MC04g0417 vs. ExPASy Swiss-Prot
Match: P49389 (60S ribosomal protein L16, mitochondrial OS=Brassica napus OX=3708 GN=RPL16 PE=3 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-41
Identity = 84/103 (81.55%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 2   KYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAII---------GQ 61
           K +KY KG+CSRGCKPDGT+LGFGRY TKSCRAGRLSYRAIEAARRA I         GQ
Sbjct: 40  KRTKYSKGRCSRGCKPDGTKLGFGRYGTKSCRAGRLSYRAIEAARRATIGHSFRRAMSGQ 99

Query: 62  FRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 96
           FRRN KIWVRVLADLPITGKP EVRMGRGKGNPTGWIA VSTG
Sbjct: 100 FRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTG 142

[Close]

BLAST of MC04g0417 vs. ExPASy Swiss-Prot
Match: P27927 (60S ribosomal protein L16, mitochondrial OS=Zea mays OX=4577 GN=RPL16 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.6e-40
Identity = 84/103 (81.55%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAII--------GQ 60
           TKYSKY K +CSRG +PDGTQLGFGRY TKS RAGRLSYRAIEAARRA I        GQ
Sbjct: 48  TKYSKYSKCRCSRGREPDGTQLGFGRYGTKSSRAGRLSYRAIEAARRATIGQFRRAMSGQ 107

Query: 61  FRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 96
           FRRN KIWVRVLADLPITGKP EVRMGRGKGNPTGWIA VSTG
Sbjct: 108 FRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTG 150

[Close]

BLAST of MC04g0417 vs. NCBI nr
Match: YP_009745364.1 (ribosomal protein L16 [Salix paraflabellaris] >YP_009988226.1 ribosomal protein L16 [Salix cardiophylla] >YP_009988263.1 ribosomal protein L16 [Salix polaris] >QIH29810.1 ribosomal protein L16 [Salix paraflabellaris] >QNM38472.1 ribosomal protein L16 [Salix cardiophylla] >QNM38509.1 ribosomal protein L16 [Salix polaris])

HSP 1 Score: 184 bits (468), Expect = 4.66e-58
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           TKYSK  KG+CSRGCKPDGTQLGFGRY TKSC+AGRLSYRAIEAARRAIIGQFRRNGKIW
Sbjct: 7   TKYSKNRKGRCSRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIW 66

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 95
           VRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 67  VRVLADLPITGKPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MC04g0417 vs. NCBI nr
Match: YP_009230369.1 (ribosomal protein L16, partial [Salix suchowensis] >AMF83889.1 ribosomal protein L16, partial [Salix suchowensis])

HSP 1 Score: 184 bits (468), Expect = 4.66e-58
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           TKYSK  KG+CSRGCKPDGTQLGFGRY TKSC+AGRLSYRAIEAARRAIIGQFRRNGKIW
Sbjct: 7   TKYSKNRKGRCSRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIW 66

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 95
           VRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 67  VRVLADLPITGKPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MC04g0417 vs. NCBI nr
Match: YP_009239021.1 (ribosomal protein L16 [Salix purpurea] >AMO27206.1 ribosomal protein L16 [Salix purpurea])

HSP 1 Score: 184 bits (468), Expect = 4.66e-58
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           TKYSK  KG+CSRGCKPDGTQLGFGRY TKSC+AGRLSYRAIEAARRAIIGQFRRNGKIW
Sbjct: 7   TKYSKNRKGRCSRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIW 66

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 95
           VRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 67  VRVLADLPITGKPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MC04g0417 vs. NCBI nr
Match: YP_009560664.1 (ribosomal protein L16, partial [Populus alba] >QAA78963.1 ribosomal protein L16, partial [Populus alba])

HSP 1 Score: 184 bits (468), Expect = 4.97e-58
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           TKYSK  KG+CSRGCKPDGTQLGFGRY TKSC+AGRLSYRAIEAARRAIIGQFRRNGKIW
Sbjct: 9   TKYSKNRKGRCSRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIW 68

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 95
           VRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 69  VRVLADLPITGKPTEIRMGRGKGNPTGWIARVSTG 103

[Close]

BLAST of MC04g0417 vs. NCBI nr
Match: YP_003587232.1 (ribosomal protein L16 [Citrullus lanatus] >ACV96644.1 ribosomal protein L16 [Citrullus lanatus])

HSP 1 Score: 184 bits (467), Expect = 6.63e-58
Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           TKYSKY KG+CSRGCKPDGTQLGFGRY  +SCRAGRLSYRAIEAARRAIIGQFRRNGKIW
Sbjct: 7   TKYSKYRKGRCSRGCKPDGTQLGFGRYGIQSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 66

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 95
           VRV ADLPITGKPTEVRMGRGKGNPTGWIA VSTG
Sbjct: 67  VRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MC04g0417 vs. ExPASy TrEMBL
Match: A0A7G9ISX8 (Ribosomal protein L16 OS=Salix cardiophylla OX=688335 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 2.26e-58
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           TKYSK  KG+CSRGCKPDGTQLGFGRY TKSC+AGRLSYRAIEAARRAIIGQFRRNGKIW
Sbjct: 7   TKYSKNRKGRCSRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIW 66

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 95
           VRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 67  VRVLADLPITGKPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MC04g0417 vs. ExPASy TrEMBL
Match: A0A109WWC5 (Ribosomal protein L16 (Fragment) OS=Salix suchowensis OX=1278906 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 2.26e-58
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           TKYSK  KG+CSRGCKPDGTQLGFGRY TKSC+AGRLSYRAIEAARRAIIGQFRRNGKIW
Sbjct: 7   TKYSKNRKGRCSRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIW 66

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 95
           VRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 67  VRVLADLPITGKPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MC04g0417 vs. ExPASy TrEMBL
Match: A0A140HPA9 (Ribosomal protein L16 OS=Salix purpurea OX=77065 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 2.26e-58
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           TKYSK  KG+CSRGCKPDGTQLGFGRY TKSC+AGRLSYRAIEAARRAIIGQFRRNGKIW
Sbjct: 7   TKYSKNRKGRCSRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIW 66

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 95
           VRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 67  VRVLADLPITGKPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MC04g0417 vs. ExPASy TrEMBL
Match: A0A7G9IT15 (Ribosomal protein L16 OS=Salix polaris OX=395315 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 2.26e-58
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           TKYSK  KG+CSRGCKPDGTQLGFGRY TKSC+AGRLSYRAIEAARRAIIGQFRRNGKIW
Sbjct: 7   TKYSKNRKGRCSRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIW 66

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 95
           VRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 67  VRVLADLPITGKPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MC04g0417 vs. ExPASy TrEMBL
Match: A0A451FPI4 (Ribosomal protein L16 (Fragment) OS=Populus alba OX=43335 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 2.41e-58
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           TKYSK  KG+CSRGCKPDGTQLGFGRY TKSC+AGRLSYRAIEAARRAIIGQFRRNGKIW
Sbjct: 9   TKYSKNRKGRCSRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIW 68

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 95
           VRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 69  VRVLADLPITGKPTEIRMGRGKGNPTGWIARVSTG 103

[Close]

BLAST of MC04g0417 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 180.6 bits (457), Expect = 5.7e-46
Identity = 88/103 (85.44%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAII--------GQ 60
           TKYSKY KG+CSRGCKPDGT+LGFGRY TKSC+AGRLSYRAIEAARRAII        GQ
Sbjct: 42  TKYSKYRKGRCSRGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAMSGQ 101

Query: 61  FRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 96
           FRRNGKIWVRV ADLPITGKPTEVRMGRGKGNPTGWIA VSTG
Sbjct: 102 FRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTG 144

[Close]

BLAST of MC04g0417 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-16
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           T++ K  +G+  +G    G ++ FGRY  ++     ++ R IEA RRA+    RR GKIW
Sbjct: 7   TRFRKQHRGRL-KGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIW 66

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 96
           VR+  D P+T +P E RMG GKG+P  W+A V  G
Sbjct: 67  VRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPG 100

[Close]

BLAST of MC04g0417 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 1   TKYSKYCKGKCSRGCKPDGTQLGFGRYDTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIW 60
           TK+ K+ +G+ ++G    G      RY  ++     ++ R IEA RRA+     R   + 
Sbjct: 835 TKFQKHHRGRINKGVSSQGYIC--SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVR 894

Query: 61  VRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 96
           V + AD P+T +P E RMGRGKG P  W+A V  G
Sbjct: 895 VHIFADKPVTVRPPETRMGRGKGAPAFWVAVVKPG 927

The following BLAST results are available for this feature:

BLAST of MC04g0417 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04715	3.6e-45	86.41	60S ribosomal protein L16, mitochondrial OS=Petunia hybrida OX=4102 GN=RPL16 PE=...	[more]
Q95747	3.4e-43	83.50	60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P46801	1.3e-42	83.50	60S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]
P49389	1.9e-41	81.55	60S ribosomal protein L16, mitochondrial OS=Brassica napus OX=3708 GN=RPL16 PE=3...	[more]
P27927	4.6e-40	81.55	60S ribosomal protein L16, mitochondrial OS=Zea mays OX=4577 GN=RPL16 PE=3 SV=1	[more]

BLAST of MC04g0417 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009745364.1	4.66e-58	92.63	ribosomal protein L16 [Salix paraflabellaris] >YP_009988226.1 ribosomal protein ...	[more]
YP_009230369.1	4.66e-58	92.63	ribosomal protein L16, partial [Salix suchowensis] >AMF83889.1 ribosomal protein...	[more]
YP_009239021.1	4.66e-58	92.63	ribosomal protein L16 [Salix purpurea] >AMO27206.1 ribosomal protein L16 [Salix ...	[more]
YP_009560664.1	4.97e-58	92.63	ribosomal protein L16, partial [Populus alba] >QAA78963.1 ribosomal protein L16,...	[more]
YP_003587232.1	6.63e-58	92.63	ribosomal protein L16 [Citrullus lanatus] >ACV96644.1 ribosomal protein L16 [Cit...	[more]

BLAST of MC04g0417 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7G9ISX8	2.26e-58	92.63	Ribosomal protein L16 OS=Salix cardiophylla OX=688335 GN=rpl16 PE=3 SV=1	[more]
A0A109WWC5	2.26e-58	92.63	Ribosomal protein L16 (Fragment) OS=Salix suchowensis OX=1278906 GN=rpl16 PE=3 S...	[more]
A0A140HPA9	2.26e-58	92.63	Ribosomal protein L16 OS=Salix purpurea OX=77065 GN=rpl16 PE=3 SV=1	[more]
A0A7G9IT15	2.26e-58	92.63	Ribosomal protein L16 OS=Salix polaris OX=395315 GN=rpl16 PE=3 SV=1	[more]
A0A451FPI4	2.41e-58	92.63	Ribosomal protein L16 (Fragment) OS=Populus alba OX=43335 GN=rpl16 PE=3 SV=1	[more]

BLAST of MC04g0417 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00080.1	5.7e-46	85.44	ribosomal protein L16	[more]
ATCG00790.1	2.8e-16	42.11	ribosomal protein L16	[more]
AT2G28830.1	2.7e-11	36.84	PLANT U-BOX 12	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 83..95 score: 21.6 coord: 53..82 score: 60.0 coord: 19..31 score: 41.54 coord: 37..48 score: 61.67
IPR000114	Ribosomal protein L16	TIGRFAM	TIGR01164	TIGR01164	coord: 1..95 e-value: 9.7E-27 score: 91.5
IPR000114	Ribosomal protein L16	PANTHER	PTHR12220	50S/60S RIBOSOMAL PROTEIN L16	coord: 1..95
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..95 e-value: 3.1E-30 score: 107.3
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 1..95
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 1..95 e-value: 5.5E-28 score: 97.6
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 19..95 e-value: 4.82678E-26 score: 91.0139
None	No IPR available	PANTHER	PTHR12220:SF21	60S RIBOSOMAL PROTEIN L16, MITOCHONDRIAL	coord: 1..95
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00586	RIBOSOMAL_L16_1	coord: 54..65
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 77..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0417.1	MC04g0417.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome