MC04g0403 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0403
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	glycine-rich protein 2-like
Location	MC04: 3219757 .. 3220937 (-)
RNA-Seq Expression	MC04g0403
Synteny	MC04g0403

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAGAGGGTCAGTGGAAAAGTCAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGAGGGGGGCGAGGATCTTTTCGTTCACCAGTCCTCCATCAGATCCGACGGCTTCCGGAGCCTCGGCGTCGGGGAGGATGTCGAATTTGTGATCGAGGCCGAGGCTGACGGCCGTTCCAAGGCCGTCGACGTCACTGGTCCCGGCGAATCGTCCGTGCAGGGGAGCCGGGGAGGAGGAGGAGGAGGAGGAGGCGCCGGAGGAGGCGGGGGTGGCTATGGAGGCGCAGGTGGAGGAGGCGGGAGAGGGAGGCGCGGTGGGGGGTACGGATTTAACGGTGGGAGCGGCGGCGGTGGGCGAGGGGGTTACGGCGGGGGCGGCGGTGGTTACGGGGGTGGGGGTTATGGAGGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGCTTGTTTTAAGTGCGGCGAGACAGGGCATCTGGCCAGGGACTGCTACCAGAGCGGATCTCAAGGCGGTGGAGATAGGTACGGCAGCGGCGGCGGCGGCGGTGGCGGTGGGAACTGCTATAGCTGTGGCGAATCTGGGCATTTCGCTAGGGAGTGTCCAAACAGTGGCCGTTGATCTCGTAAATTGGTGACTGGCATTTACTTTTGTTTGGTTCATCATCTGGGGGTGTTTTGTTCGGGTTTCCTTCTTCGCCTTTCATCTCAGTTTTGATCTACTGGGGTCTGTAAGGTCATCTTTTAAACAGGATTTGAGTAGTAGTCTTTTTCTCTTATGGATTTTTATCTCAGCTTAGTTTCTGGTCATTGTCTTTTGGGTGTTGATGGTTTGTTTGATGAATTTAGGGGTATTTTATCAGCGATCCTTTAGAAAAGAGATGATTTATGGGGGGAGGAATCTTCCTTGATTCTCTGTTTCTTTAACTGTTGATACAAGTATTTTCATATACAATGCTCTGCTTCTGGTTTTCAATGAATGAATGTGGGTTTCATCAGATCTTTGTGTTTGCTTACCAATAACTCTATTGAATCAATGGCAATGGGGACACTCCCTCTTCATTGCTTTTCTCTTTTTCCTATGCAATTATTGTTGGAATGAGCATGAGACTATGAAAGGGAAATGCAGGCTGGAAAGAGATAAAGTGGTACCTCTTTTGTGAAAGAGCTCTGTGCTTGATT

mRNA sequence

ATGGGAGAGAGGGTCAGTGGAAAAGTCAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGAGGGGGGCGAGGATCTTTTCGTTCACCAGTCCTCCATCAGATCCGACGGCTTCCGGAGCCTCGGCGTCGGGGAGGATGTCGAATTTGTGATCGAGGCCGAGGCTGACGGCCGTTCCAAGGCCGTCGACGTCACTGGTCCCGGCGAATCGTCCGTGCAGGGGAGCCGGGGAGGAGGAGGAGGAGGAGGAGGCGCCGGAGGAGGCGGGGGTGGCTATGGAGGCGCAGGTGGAGGAGGCGGGAGAGGGAGGCGCGGTGGGGGGTACGGATTTAACGGTGGGAGCGGCGGCGGTGGGCGAGGGGGTTACGGCGGGGGCGGCGGTGGTTACGGGGGTGGGGGTTATGGAGGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGCTTGTTTTAAGTGCGGCGAGACAGGGCATCTGGCCAGGGACTGCTACCAGAGCGGATCTCAAGGCGGTGGAGATAGGTACGGCAGCGGCGGCGGCGGCGGTGGCGGTGGGAACTGCTATAGCTGTGGCGAATCTGGGCATTTCGCTAGGGAGTGTCCAAACAGTGGCCGTTGATCTCGTAAATTGGTGACTGGCATTTACTTTTGTTTGGTTCATCATCTGGGGGTGTTTTGTTCGGGTTTCCTTCTTCGCCTTTCATCTCAGTTTTGATCTACTGGGGTCTGTAAGGTCATCTTTTAAACAGGATTTGAGTAGTAGTCTTTTTCTCTTATGGATTTTTATCTCAGCTTAGTTTCTGGTCATTGTCTTTTGGGTGTTGATGGTTTGTTTGATGAATTTAGGGGTATTTTATCAGCGATCCTTTAGAAAAGAGATGATTTATGGGGGGAGGAATCTTCCTTGATTCTCTGTTTCTTTAACTGTTGATACAAGTATTTTCATATACAATGCTCTGCTTCTGGTTTTCAATGAATGAATGTGGGTTTCATCAGATCTTTGTGTTTGCTTACCAATAACTCTATTGAATCAATGGCAATGGGGACACTCCCTCTTCATTGCTTTTCTCTTTTTCCTATGCAATTATTGTTGGAATGAGCATGAGACTATGAAAGGGAAATGCAGGCTGGAAAGAGATAAAGTGGTACCTCTTTTGTGAAAGAGCTCTGTGCTTGATT

Coding sequence (CDS)

ATGGGAGAGAGGGTCAGTGGAAAAGTCAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGAGGGGGGCGAGGATCTTTTCGTTCACCAGTCCTCCATCAGATCCGACGGCTTCCGGAGCCTCGGCGTCGGGGAGGATGTCGAATTTGTGATCGAGGCCGAGGCTGACGGCCGTTCCAAGGCCGTCGACGTCACTGGTCCCGGCGAATCGTCCGTGCAGGGGAGCCGGGGAGGAGGAGGAGGAGGAGGAGGCGCCGGAGGAGGCGGGGGTGGCTATGGAGGCGCAGGTGGAGGAGGCGGGAGAGGGAGGCGCGGTGGGGGGTACGGATTTAACGGTGGGAGCGGCGGCGGTGGGCGAGGGGGTTACGGCGGGGGCGGCGGTGGTTACGGGGGTGGGGGTTATGGAGGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGCTTGTTTTAAGTGCGGCGAGACAGGGCATCTGGCCAGGGACTGCTACCAGAGCGGATCTCAAGGCGGTGGAGATAGGTACGGCAGCGGCGGCGGCGGCGGTGGCGGTGGGAACTGCTATAGCTGTGGCGAATCTGGGCATTTCGCTAGGGAGTGTCCAAACAGTGGCCGTTGA

Protein sequence

MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEADGRSKAVDVTGPGESSVQGSRGGGGGGGGAGGGGGGYGGAGGGGGRGRRGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGGACFKCGETGHLARDCYQSGSQGGGDRYGSGGGGGGGGNCYSCGESGHFARECPNSGR

Homology

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BLAST of MC04g0403 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-50
Identity = 147/210 (70.00%), Postives = 162/210 (77.14%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEADG 61
           G+R  G VKWFSDQKG+GFI+P++GGEDLFVHQS IRS+GFRSL  GE VEF +E+  DG
Sbjct: 6   GQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDG 65

Query: 62  RSKAVDVTGPGESSVQGSRGGGGGGGGAGGGG-----GGYGGAGGGGGRGRRGGGYGFNG 121
           R+KAVDVTGP  ++VQG RGGGGGGGG GGGG     GGYGG G GG RG  GG  G+ G
Sbjct: 66  RTKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGG 125

Query: 122 GSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGGACFKCGETGHLARDCYQSGSQGGGDRY 181
           G G GG   YGGGGGGYGGGG G GGGG GGG  CFKCGE+GH ARDC QSG  GGG R+
Sbjct: 126 GGGYGGGSRYGGGGGGYGGGG-GYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRF 185

Query: 182 GSGGGGGGGGNCYSCGESGHFARECPNSGR 207
           G GGGGGGGG CY CGE GHFAREC + GR
Sbjct: 186 GGGGGGGGGGGCYKCGEDGHFARECTSGGR 214

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BLAST of MC04g0403 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-35
Identity = 124/211 (58.77%), Postives = 144/211 (68.25%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEADG 61
           G+R  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E +  G
Sbjct: 12  GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71

Query: 62  RSKAVDVTGPGESSVQGSRGGGGGGGGAGGGGGGYGGAGGGGGRGRRGGGYGFNGGSGGG 121
           R KA++V+GP  + VQG+ GGGG  GG        GG GGGGGR              GG
Sbjct: 72  RPKAIEVSGPDGAPVQGNSGGGGSSGGR-------GGFGGGGGR--------------GG 131

Query: 122 GRGGYGGGGGGYGGGGYGGGGGGGGGGGACFKCGETGHLARDCYQSG----SQGGGDRYG 181
           GRGG G  GGGYGG G  GG GGGGG  +CFKCGE GH+AR+C Q G      GGG RYG
Sbjct: 132 GRGG-GSYGGGYGGRG-SGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYG 191

Query: 182 SGGGGGGGG---NCYSCGESGHFARECPNSG 206
           SGGGGGGGG   +CYSCGESGHFAR+C + G
Sbjct: 192 SGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

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BLAST of MC04g0403 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.2e-26
Identity = 121/214 (56.54%), Postives = 138/214 (64.49%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEADG 61
           GER  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E + + 
Sbjct: 8   GERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNN 67

Query: 62  RSKAVDVTGPGESSVQGSRGGGGGGGGAGGGGGGYGGAGGGGGRGRRGGGYGFNGGSGGG 121
           R KA+DV+GP  + VQG+ GGG  GG  G GGG  GG G GGG G  GGGYG  GG G G
Sbjct: 68  RPKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRG 127

Query: 122 GRGGYGGGGGGY-------GGGGYGGGGGGGGGGGACFKCGETGHLARDCYQSGSQGGGD 181
           G   Y  G  G+       GGGGYGGGGGG GGGG                  G  GGG 
Sbjct: 128 GSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGG------------------GYGGGGG 187

Query: 182 RYGSG--GGGGGGGNCYSCGESGHFARECPNSGR 207
            YG G  GGGGGGG+CYSCGESGHFAR+C + GR
Sbjct: 188 GYGGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

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BLAST of MC04g0403 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.3e-17
Identity = 122/262 (46.56%), Postives = 139/262 (53.05%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEADGRS 63
           R  GKV WFSD KGYGFI+P++GGE+LFVHQSSI SDGFRSL +GE VE+ I   +DG++
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGESSV----QGSRGGGGGGGGAGGGG-------GGYGGAGGGGGRGRRGGGY 123
           KA++VT PG  S+      SRG GG     G  G       GG GG   GGG GRR GG 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129

Query: 124 G--FNGG-----------SGGGGRGGYGGGG-----------------GGYGGGGYGGGG 183
           G  +  G           SGGG  GG GGGG                 GG GG  YGGGG
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGG 189

Query: 184 GGGGGGGACFKCGETGHLARDCYQSG----SQGGGDRYGSG---------------GGGG 206
           G G GG  C+ CG  GH ARDC Q+G      GG   Y  G               GGGG
Sbjct: 190 GRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGG 249

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BLAST of MC04g0403 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11
Identity = 98/214 (45.79%), Postives = 123/214 (57.48%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEADGRS 63
           R +GKV WF+  KGYGFI+P++G  +LFVHQSSI S+G+RSL VG+ VEF I   +DG++
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGESSVQGSRGGGGGGGGAGGGGG---------------GYGGAGGGGGRGRR 123
           KAV+VT PG  S++      G G   GGGG                G GG GGGG R  R
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 GGGYGFN-GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGGACFKCGETGHLARDCYQS 183
           GG   +N G +G   R     G G   G   GG  G       C+ CG+ GH+ARDC Q 
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDG-------CYTCGDVGHVARDCTQK 189

Query: 184 GSQGGGDRYGSGGGGGGGGNCYSCGESGHFAREC 202
            S G GD+ G+  GG  G  CY+CG+ GHFAR+C
Sbjct: 190 -SVGNGDQRGAVKGGNDG--CYTCGDVGHFARDC 213

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BLAST of MC04g0403 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus])

HSP 1 Score: 294 bits (752), Expect = 2.85e-98
Identity = 196/214 (91.59%), Postives = 202/214 (94.39%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGAGGGGG-----GYGGAGGGGGRGRRGGG-YGF 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGGAGGGGG     GYGG GG GGRGRRGGG YGF
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGG-GGRGRRGGGGYGF 120

Query: 121 NGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGGACFKCGETGHLARDCYQSGSQGGG- 180
           NGGSGGGGRGGYGGGGGGYGGGGYGG GGGGGGGGACFKCGETGH+ARDCYQSGSQGGG 
Sbjct: 121 NGGSGGGGRGGYGGGGGGYGGGGYGG-GGGGGGGGACFKCGETGHMARDCYQSGSQGGGG 180

Query: 181 DRYGSGGGGGGGG-NCYSCGESGHFARECPNSGR 206
           DRYG GGGGGGGG NCYSCGESGHFARECP+SGR
Sbjct: 181 DRYGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

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BLAST of MC04g0403 vs. NCBI nr
Match: XP_038888820.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 289 bits (740), Expect = 1.45e-96
Identity = 191/208 (91.83%), Postives = 197/208 (94.71%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEAD 60
           M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IEAE+D
Sbjct: 1   MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGG-GGGGGAGGGGGGYGGAGGGGGRGRRGGG-YGFNGGS 120
           GRSKAVDVTGPGE+SVQGSRGGG GGGGG   GGGGYGG GG GGRGRRGGG YGFNGGS
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGG-GGRGRRGGGGYGFNGGS 120

Query: 121 GGGGRGGYGGGGGGYGGGGYGGGGGGGGGGGACFKCGETGHLARDCYQSGSQGGGDRYGS 180
           GGGGRGGYGGGGGGYGGGGYGG GGGGGGGGACFKCGETGH+ARDCYQSGSQGGGDRY  
Sbjct: 121 GGGGRGGYGGGGGGYGGGGYGG-GGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY-- 180

Query: 181 GGGGGGGGNCYSCGESGHFARECPNSGR 206
           GGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 GGGGGGGGNCYSCGESGHFARECPSSGR 204

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BLAST of MC04g0403 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015270.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283 bits (723), Expect = 5.24e-94
Identity = 188/210 (89.52%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAEAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGA--GGGGGGYGGAGGGGGRGRRGGGYGFNGGS 120
           GRSKAVDVTGPGESSVQGSRGGGGGGGG+  GGGGGGYGG G  GGRGRRGG YGFNGGS
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGG--GGRGRRGG-YGFNGGS 120

Query: 121 GGGGRGGYGGGGGGYGGGGYGGG--GGGGGGGGACFKCGETGHLARDCYQSGSQGGGDRY 180
           GGGGRG YG    G GGGGYGGG   GGGGGGGACFKCGE GH+ARDCYQSGSQGGGDRY
Sbjct: 121 GGGGRGSYG----GSGGGGYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRY 180

Query: 181 GSGGGGGGGGNCYSCGESGHFARECPNSGR 206
            SGGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 -SGGGGGGGGNCYSCGESGHFARECPSSGR 202

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BLAST of MC04g0403 vs. NCBI nr
Match: XP_023529790.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282 bits (722), Expect = 7.44e-94
Identity = 188/210 (89.52%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAEAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGA--GGGGGGYGGAGGGGGRGRRGGGYGFNGGS 120
           GRSKAVDVTGPGESSVQGSRGGGGGGGG   GGGGGGYGG G  GGRGRRGG YGFNGGS
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGTYGGGGGGGYGGGG--GGRGRRGG-YGFNGGS 120

Query: 121 GGGGRGGYGGGGGGYGGGGYGGG--GGGGGGGGACFKCGETGHLARDCYQSGSQGGGDRY 180
           GGGGRG YG    G GGGGYGGG   GGGGGGGACFKCGE GH+ARDCYQSGSQGGGDRY
Sbjct: 121 GGGGRGSYG----GSGGGGYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRY 180

Query: 181 GSGGGGGGGGNCYSCGESGHFARECPNSGR 206
            SGGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 -SGGGGGGGGNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of MC04g0403 vs. NCBI nr
Match: XP_022989065.1 (glycine-rich protein 2-like [Cucurbita maxima])

HSP 1 Score: 282 bits (721), Expect = 1.25e-93
Identity = 189/214 (88.32%), Postives = 193/214 (90.19%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAEAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGA--GGGGGGYGGAGGGGGRGRRGGGYGFNGGS 120
           GRSKAVDVTGPGESSVQGSRGGGGGGGG+  GGGGGGYGG G  GGRGRRGG YGFNGGS
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGG--GGRGRRGG-YGFNGGS 120

Query: 121 GGGGRGGYGGGGGGYGGGGYGGG---GGGGGGGGACFKCGETGHLARDCYQSGSQGGGDR 180
           GGGGRG YG    G GGGGYGGG   GGGGGGGGACFKCGE GH+ARDCYQSGSQGGGDR
Sbjct: 121 GGGGRGLYG----GSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDR 180

Query: 181 Y---GSGGGGGGGGNCYSCGESGHFARECPNSGR 206
           Y   G GGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 YSGGGGGGGGGGGGNCYSCGESGHFARECPSSGR 207

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BLAST of MC04g0403 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 294 bits (752), Expect = 1.38e-98
Identity = 196/214 (91.59%), Postives = 202/214 (94.39%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGAGGGGG-----GYGGAGGGGGRGRRGGG-YGF 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGGAGGGGG     GYGG GG GGRGRRGGG YGF
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGG-GGRGRRGGGGYGF 120

Query: 121 NGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGGACFKCGETGHLARDCYQSGSQGGG- 180
           NGGSGGGGRGGYGGGGGGYGGGGYGG GGGGGGGGACFKCGETGH+ARDCYQSGSQGGG 
Sbjct: 121 NGGSGGGGRGGYGGGGGGYGGGGYGG-GGGGGGGGACFKCGETGHMARDCYQSGSQGGGG 180

Query: 181 DRYGSGGGGGGGG-NCYSCGESGHFARECPNSGR 206
           DRYG GGGGGGGG NCYSCGESGHFARECP+SGR
Sbjct: 181 DRYGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

[Close]

BLAST of MC04g0403 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1)

HSP 1 Score: 283 bits (723), Expect = 2.54e-94
Identity = 188/210 (89.52%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAEAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGA--GGGGGGYGGAGGGGGRGRRGGGYGFNGGS 120
           GRSKAVDVTGPGESSVQGSRGGGGGGGG+  GGGGGGYGG G  GGRGRRGG YGFNGGS
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGG--GGRGRRGG-YGFNGGS 120

Query: 121 GGGGRGGYGGGGGGYGGGGYGGG--GGGGGGGGACFKCGETGHLARDCYQSGSQGGGDRY 180
           GGGGRG YG    G GGGGYGGG   GGGGGGGACFKCGE GH+ARDCYQSGSQGGGDRY
Sbjct: 121 GGGGRGSYG----GSGGGGYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRY 180

Query: 181 GSGGGGGGGGNCYSCGESGHFARECPNSGR 206
            SGGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 -SGGGGGGGGNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of MC04g0403 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1)

HSP 1 Score: 282 bits (721), Expect = 6.07e-94
Identity = 189/214 (88.32%), Postives = 193/214 (90.19%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAEAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGA--GGGGGGYGGAGGGGGRGRRGGGYGFNGGS 120
           GRSKAVDVTGPGESSVQGSRGGGGGGGG+  GGGGGGYGG G  GGRGRRGG YGFNGGS
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGG--GGRGRRGG-YGFNGGS 120

Query: 121 GGGGRGGYGGGGGGYGGGGYGGG---GGGGGGGGACFKCGETGHLARDCYQSGSQGGGDR 180
           GGGGRG YG    G GGGGYGGG   GGGGGGGGACFKCGE GH+ARDCYQSGSQGGGDR
Sbjct: 121 GGGGRGLYG----GSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDR 180

Query: 181 Y---GSGGGGGGGGNCYSCGESGHFARECPNSGR 206
           Y   G GGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 YSGGGGGGGGGGGGNCYSCGESGHFARECPSSGR 207

[Close]

BLAST of MC04g0403 vs. ExPASy TrEMBL
Match: A0A1S3BIY4 (LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC103490405 PE=4 SV=1)

HSP 1 Score: 268 bits (685), Expect = 1.17e-88
Identity = 178/199 (89.45%), Postives = 184/199 (92.46%), Query Frame = 0


Query: 12  FSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEADGRSKAVDVTGP 71
           FSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEF+IEAE+DGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 72  GESSVQGSRGGGGGGGGAGGGG----GGYGGAGGGGGRGRRGGGYGFNGGSGGGGRGGYG 131
           GE+SVQGSRGGGGGGGG GGGG    GGYGG GGGG   R GGGYGFNGGSGGGGRGGYG
Sbjct: 61  GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGYG 120

Query: 132 GGGGGYGGGGYGGGGGGGGGGGACFKCGETGHLARDCYQSGSQGGGDRYGSGGGGGGGGN 191
           GGGGGYGGGGYG  GGGGGGGGACFKCGETGH+ARDCYQSGSQGGGDRY   GGGGGGGN
Sbjct: 121 GGGGGYGGGGYG--GGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY---GGGGGGGN 180

Query: 192 CYSCGESGHFARECPNSGR 206
           CYSCGESGHFARECP+SGR
Sbjct: 181 CYSCGESGHFARECPSSGR 194

[Close]

BLAST of MC04g0403 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1)

HSP 1 Score: 263 bits (673), Expect = 4.88e-87
Identity = 166/206 (80.58%), Postives = 171/206 (83.01%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEAD 60
           M ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEF+IE EAD
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGAGGGGGGYGGAGGGGGRGRRGGGYGFNGGSGG 120
           GR KA+DVTGPGESSVQGSRGGGGGGGG                RG RGGGYGFNGG GG
Sbjct: 61  GRCKAIDVTGPGESSVQGSRGGGGGGGGE---------------RGSRGGGYGFNGG-GG 120

Query: 121 GGRGGYGGGGGGYGGGGYGGGGGGGGGGGACFKCGETGHLARDCYQSGSQGGGDRYGSGG 180
           GGRGGYG GGGGY         GGGGGGG CFKCGETGH+ARDCYQ GSQGGGDRYG GG
Sbjct: 121 GGRGGYGRGGGGY---------GGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYG-GG 180

Query: 181 GGGGGGNCYSCGESGHFARECPNSGR 206
           GGGGGGNCYSCGESGHFAR+C +SGR
Sbjct: 181 GGGGGGNCYSCGESGHFARDCQSSGR 180

[Close]

BLAST of MC04g0403 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 151.4 bits (381), Expect = 8.1e-37
Identity = 124/211 (58.77%), Postives = 144/211 (68.25%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEADG 61
           G+R  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E +  G
Sbjct: 12  GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71

Query: 62  RSKAVDVTGPGESSVQGSRGGGGGGGGAGGGGGGYGGAGGGGGRGRRGGGYGFNGGSGGG 121
           R KA++V+GP  + VQG+ GGGG  GG        GG GGGGGR              GG
Sbjct: 72  RPKAIEVSGPDGAPVQGNSGGGGSSGGR-------GGFGGGGGR--------------GG 131

Query: 122 GRGGYGGGGGGYGGGGYGGGGGGGGGGGACFKCGETGHLARDCYQSG----SQGGGDRYG 181
           GRGG G  GGGYGG G  GG GGGGG  +CFKCGE GH+AR+C Q G      GGG RYG
Sbjct: 132 GRGG-GSYGGGYGGRG-SGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYG 191

Query: 182 SGGGGGGGG---NCYSCGESGHFARECPNSG 206
           SGGGGGGGG   +CYSCGESGHFAR+C + G
Sbjct: 192 SGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

[Close]

BLAST of MC04g0403 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 118.6 bits (296), Expect = 5.8e-27
Identity = 121/214 (56.54%), Postives = 138/214 (64.49%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEADG 61
           GER  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E + + 
Sbjct: 8   GERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNN 67

Query: 62  RSKAVDVTGPGESSVQGSRGGGGGGGGAGGGGGGYGGAGGGGGRGRRGGGYGFNGGSGGG 121
           R KA+DV+GP  + VQG+ GGG  GG  G GGG  GG G GGG G  GGGYG  GG G G
Sbjct: 68  RPKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRG 127

Query: 122 GRGGYGGGGGGY-------GGGGYGGGGGGGGGGGACFKCGETGHLARDCYQSGSQGGGD 181
           G   Y  G  G+       GGGGYGGGGGG GGGG                  G  GGG 
Sbjct: 128 GSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGG------------------GYGGGGG 187

Query: 182 RYGSG--GGGGGGGNCYSCGESGHFARECPNSGR 207
            YG G  GGGGGGG+CYSCGESGHFAR+C + GR
Sbjct: 188 GYGGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of MC04g0403 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 89.4 bits (220), Expect = 3.8e-18
Identity = 122/262 (46.56%), Postives = 139/262 (53.05%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEADGRS 63
           R  GKV WFSD KGYGFI+P++GGE+LFVHQSSI SDGFRSL +GE VE+ I   +DG++
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGESSV----QGSRGGGGGGGGAGGGG-------GGYGGAGGGGGRGRRGGGY 123
           KA++VT PG  S+      SRG GG     G  G       GG GG   GGG GRR GG 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129

Query: 124 G--FNGG-----------SGGGGRGGYGGGG-----------------GGYGGGGYGGGG 183
           G  +  G           SGGG  GG GGGG                 GG GG  YGGGG
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGG 189

Query: 184 GGGGGGGACFKCGETGHLARDCYQSG----SQGGGDRYGSG---------------GGGG 206
           G G GG  C+ CG  GH ARDC Q+G      GG   Y  G               GGGG
Sbjct: 190 GRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGG 249

[Close]

BLAST of MC04g0403 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-13
Identity = 98/214 (45.79%), Postives = 123/214 (57.48%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFVIEAEADGRS 63
           R +GKV WF+  KGYGFI+P++G  +LFVHQSSI S+G+RSL VG+ VEF I   +DG++
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGESSVQGSRGGGGGGGGAGGGGG---------------GYGGAGGGGGRGRR 123
           KAV+VT PG  S++      G G   GGGG                G GG GGGG R  R
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 GGGYGFN-GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGGACFKCGETGHLARDCYQS 183
           GG   +N G +G   R     G G   G   GG  G       C+ CG+ GH+ARDC Q 
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDG-------CYTCGDVGHVARDCTQK 189

Query: 184 GSQGGGDRYGSGGGGGGGGNCYSCGESGHFAREC 202
            S G GD+ G+  GG  G  CY+CG+ GHFAR+C
Sbjct: 190 -SVGNGDQRGAVKGGNDG--CYTCGDVGHFARDC 213

The following BLAST results are available for this feature:

BLAST of MC04g0403 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27484	2.1e-50	70.00	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q38896	1.1e-35	58.77	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q41188	8.2e-26	56.54	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q94C69	5.3e-17	46.56	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	1.1e-11	45.79	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of MC04g0403 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658593.1	2.85e-98	91.59	glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_02...	[more]
XP_038888820.1	1.45e-96	91.83	glycine-rich protein 2-like [Benincasa hispida]	[more]
XP_022928350.1	5.24e-94	89.52	glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain...	[more]
XP_023529790.1	7.44e-94	89.52	glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989065.1	1.25e-93	88.32	glycine-rich protein 2-like [Cucurbita maxima]	[more]

BLAST of MC04g0403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4M5	1.38e-98	91.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1	[more]
A0A6J1ERG9	2.54e-94	89.52	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 S...	[more]
A0A6J1JLC0	6.07e-94	88.32	glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=...	[more]
A0A1S3BIY4	1.17e-88	89.45	LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1GLV7	4.88e-87	80.58	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 S...	[more]

BLAST of MC04g0403 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21060.1	8.1e-37	58.77	glycine-rich protein 2B	[more]
AT4G38680.1	5.8e-27	56.54	glycine rich protein 2	[more]
AT2G17870.1	3.8e-18	46.56	cold shock domain protein 3	[more]
AT4G36020.1	8.1e-13	45.79	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 28..37 score: 64.04 coord: 43..61 score: 40.98 coord: 7..22 score: 63.69
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 6..70 e-value: 4.0E-24 score: 84.3
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 4..70 score: 31.084557
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 5..70 e-value: 1.56866E-24 score: 89.5602
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 6..71 e-value: 1.5E-22 score: 90.9
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 187..203 e-value: 2.0E-5 score: 34.1 coord: 150..166 e-value: 2.0E-5 score: 34.0
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 150..164 e-value: 4.0E-7 score: 29.8 coord: 187..203 e-value: 2.4E-7 score: 30.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 151..164 score: 11.004309
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 188..203 score: 11.317481
None	No IPR available	GENE3D	4.10.60.10		coord: 146..175 e-value: 3.2E-7 score: 31.9 coord: 183..206 e-value: 3.9E-7 score: 31.6
None	No IPR available	GENE3D	2.40.50.140		coord: 2..81 e-value: 3.9E-27 score: 96.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..89
None	No IPR available	PANTHER	PTHR46565:SF8	COLD SHOCK PROTEIN 2	coord: 1..118
None	No IPR available	PANTHER	PTHR46565:SF8	COLD SHOCK PROTEIN 2	coord: 118..206
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..118 coord: 118..206
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 18..37
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 3..70
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 141..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0403.1	MC04g0403.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding