MC04g0096 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0096
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	CLAVATA3/ESR-RELATED 7
Location	MC04: 697918 .. 698169 (+)
RNA-Seq Expression	MC04g0096
Synteny	MC04g0096

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCAAAACTTGCTCCATTGGTGGCAGTCCTTTTCATGCTCATGCTTGTCTCAGCCGTGGCCGGCCGCCATGCACCGCCGCCGCCACTGTCGGAGGCCACCCAAATCAGCAGCAGCATTATAATGCTGCGTAAATTGGGTTATAGCAAAACCCAAATGGAGCATTTTAGACGACTTTATTCAAATTCCATCGACAGATACACACCCGGAGGGCCTGATTCTCAGCACCATTCTCAGCCCCCTCGCCTTCCA

mRNA sequence

AACCCAAAACTTGCTCCATTGGTGGCAGTCCTTTTCATGCTCATGCTTGTCTCAGCCGTGGCCGGCCGCCATGCACCGCCGCCGCCACTGTCGGAGGCCACCCAAATCAGCAGCAGCATTATAATGCTGCGTAAATTGGGTTATAGCAAAACCCAAATGGAGCATTTTAGACGACTTTATTCAAATTCCATCGACAGATACACACCCGGAGGGCCTGATTCTCAGCACCATTCTCAGCCCCCTCGCCTTCCA

Coding sequence (CDS)

AACCCAAAACTTGCTCCATTGGTGGCAGTCCTTTTCATGCTCATGCTTGTCTCAGCCGTGGCCGGCCGCCATGCACCGCCGCCGCCACTGTCGGAGGCCACCCAAATCAGCAGCAGCATTATAATGCTGCGTAAATTGGGTTATAGCAAAACCCAAATGGAGCATTTTAGACGACTTTATTCAAATTCCATCGACAGATACACACCCGGAGGGCCTGATTCTCAGCACCATTCTCAGCCCCCTCGCCTTCCA

Protein sequence

NPKLAPLVAVLFMLMLVSAVAGRHAPPPPLSEATQISSSIIMLRKLGYSKTQMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP

Homology

[Close]

BLAST of MC04g0096 vs. ExPASy Swiss-Prot
Match: Q8S8N1 (CLAVATA3/ESR (CLE)-related protein 7 OS=Arabidopsis thaliana OX=3702 GN=CLE7 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-04
Identity = 28/78 (35.90%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 5  APLVAVLFMLMLVSAVAGRHAPPPPLSEATQISSSIIMLRKLGYSKTQMEHFRRLYS--N 64
          A L+ V+   +LV  + GR      ++  T+   S  +L++LGY+ ++++   R  S  N
Sbjct: 5  ALLLFVMLTFLLVIEMEGRIL---RVNSKTKDGESNDLLKRLGYNVSELKRIGRELSVQN 64

Query: 65 SIDRYTPGGPDSQHHSQP 81
           +DR++PGGPD QHHS P
Sbjct: 65 EVDRFSPGGPDPQHHSYP 79

[Close]

BLAST of MC04g0096 vs. NCBI nr
Match: KAG6589262.1 (hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (275), Expect = 1.89e-29
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  NPKLAPLVAVLFMLMLVSAVAGRHAPPP-PLSEATQISSSIIMLRKLGYSKTQMEHFRRL 60
          + KLAP +AVLF+ ML+  VAGRHA PP    E T+ SSSI+++RK GYSKTQMEH +RL
Sbjct: 7  SSKLAPFMAVLFIGMLLVTVAGRHATPPWTTEEVTESSSSIMIMRKFGYSKTQMEHLKRL 66

Query: 61 YSNSIDRYTPGGPDSQHHSQPPRLP 84
           S+S +RYTPGGPDSQHHS PPRLP
Sbjct: 67 -SSSTERYTPGGPDSQHHSHPPRLP 90

[Close]

BLAST of MC04g0096 vs. NCBI nr
Match: KAA0061638.1 (hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa] >TYK05869.1 hypothetical protein E5676_scaffold1465G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 2.29e-26
Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1  NPKLAPLVAVLFMLMLVSAVAGRHAPPPP--LSEATQ-ISSSIIML-RKLGYSKTQMEHF 60
          N  LAPL+AVLFM+MLV+A A RHA   P  + EAT+ ISSS  M+ RK GYSK QMEH 
Sbjct: 6  NRILAPLMAVLFMVMLVTAAADRHATALPWTVEEATERISSSRNMIMRKFGYSKRQMEHL 65

Query: 61 RRLYSNSIDRYTPGGPDSQHHSQPPRLP 84
          RRL S+S  RY PGGPDSQHHSQPPRLP
Sbjct: 66 RRLSSSSTARYIPGGPDSQHHSQPPRLP 93

[Close]

BLAST of MC04g0096 vs. NCBI nr
Match: KAG6572409.1 (hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100 bits (249), Expect = 2.29e-25
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 1   NPKLAPLVAVLFMLMLVSAVAGRHAPPPPLSEATQI---------SSSIIMLRKLGYSKT 60
           NPK APL AV+FM+MLV+A AGRHA P    EA  I         SSS +++R+LGY+K+
Sbjct: 9   NPKFAPLTAVIFMVMLVTAAAGRHALPLRTEEAAAIEGGGGSSSSSSSSMIMRRLGYTKS 68

Query: 61  QMEHFRRLYSNSIDRYTPGGPDSQHHSQPPRLP 84
           QMEH RRL S+S  RY PGGPDSQHHS+ PR P
Sbjct: 69  QMEHLRRL-SSSTARYIPGGPDSQHHSRSPRSP 100

[Close]

BLAST of MC04g0096 vs. NCBI nr
Match: KAE8647339.1 (hypothetical protein Csa_003556, partial [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.32e-20
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 6  PLVAVLFMLMLVSAVAGRHAPPP--PLSEATQ--ISSSIIMLRKLGYSKTQMEHFRRLYS 65
          PL+AVLFM MLV+A    HA      + EAT+   SSS +++RK GYSK QMEH RRL S
Sbjct: 12 PLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQMEHLRRLSS 71

Query: 66 NSIDRYTPGGPDSQHHSQPP 81
          +S +RY PGGPDSQHHSQPP
Sbjct: 72 SSTERYIPGGPDSQHHSQPP 91

[Close]

BLAST of MC04g0096 vs. NCBI nr
Match: MBA0739247.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 58.5 bits (140), Expect = 4.66e-09
Identity = 24/49 (48.98%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 38 SSIIMLRKLGYSKTQMEHFRRLYSNSID--RYTPGGPDSQHHSQPPRLP 84
          SS ++LRKLGY + ++EH+R++++   D  R +PGGPD +HH+ PPR+P
Sbjct: 30 SSRLLLRKLGYDRNKLEHYRQVFALKADSDRVSPGGPDHEHHAHPPRMP 78

[Close]

BLAST of MC04g0096 vs. ExPASy TrEMBL
Match: A0A5D3C664 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00250 PE=3 SV=1)

HSP 1 Score: 102 bits (255), Expect = 1.11e-26
Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1  NPKLAPLVAVLFMLMLVSAVAGRHAPPPP--LSEATQ-ISSSIIML-RKLGYSKTQMEHF 60
          N  LAPL+AVLFM+MLV+A A RHA   P  + EAT+ ISSS  M+ RK GYSK QMEH 
Sbjct: 6  NRILAPLMAVLFMVMLVTAAADRHATALPWTVEEATERISSSRNMIMRKFGYSKRQMEHL 65

Query: 61 RRLYSNSIDRYTPGGPDSQHHSQPPRLP 84
          RRL S+S  RY PGGPDSQHHSQPPRLP
Sbjct: 66 RRLSSSSTARYIPGGPDSQHHSQPPRLP 93

[Close]

BLAST of MC04g0096 vs. ExPASy TrEMBL
Match: A0A0A0KGI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419510 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.55e-23
Identity = 52/83 (62.65%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 6  PLVAVLFMLMLVSAVAGRHAPPP--PLSEATQ--ISSSIIMLRKLGYSKTQMEHFRRLYS 65
          PL+AVLFM MLV+A    HA      + EAT+   SSS +++RK GYSK QMEH RRL S
Sbjct: 12 PLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQMEHLRRLSS 71

Query: 66 NSIDRYTPGGPDSQHHSQPPRLP 84
          +S +RY PGGPDSQHHSQPPRLP
Sbjct: 72 SSTERYIPGGPDSQHHSQPPRLP 94

[Close]

BLAST of MC04g0096 vs. ExPASy TrEMBL
Match: A0A7J9BSX3 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_012535 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.25e-09
Identity = 24/49 (48.98%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 38 SSIIMLRKLGYSKTQMEHFRRLYSNSID--RYTPGGPDSQHHSQPPRLP 84
          SS ++LRKLGY + ++EH+R++++   D  R +PGGPD +HH+ PPR+P
Sbjct: 30 SSRLLLRKLGYDRNKLEHYRQVFALKADSDRVSPGGPDHEHHAHPPRMP 78

[Close]

BLAST of MC04g0096 vs. ExPASy TrEMBL
Match: A0A2P5YW95 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G002500v1 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.10e-09
Identity = 23/49 (46.94%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 38 SSIIMLRKLGYSKTQMEHFRRLYSNSID--RYTPGGPDSQHHSQPPRLP 84
          SS ++LR+LGY + ++EH+R++++   D  R +PGGPD +HH+ PPR+P
Sbjct: 30 SSRLLLRELGYDRNKLEHYRQVFALKADSDRVSPGGPDHEHHAHPPRMP 78

[Close]

BLAST of MC04g0096 vs. ExPASy TrEMBL
Match: A0A5D2TG78 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A09G002300v1 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.10e-09
Identity = 23/49 (46.94%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 38 SSIIMLRKLGYSKTQMEHFRRLYSNSID--RYTPGGPDSQHHSQPPRLP 84
          SS ++LR+LGY + ++EH+R++++   D  R +PGGPD +HH+ PPR+P
Sbjct: 30 SSRLLLRELGYDRNKLEHYRQVFALKADSDRVSPGGPDHEHHAHPPRMP 78

[Close]

BLAST of MC04g0096 vs. TAIR 10
Match: AT2G31082.1 (CLAVATA3/ESR-RELATED 7 )

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 28/78 (35.90%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 5  APLVAVLFMLMLVSAVAGRHAPPPPLSEATQISSSIIMLRKLGYSKTQMEHFRRLYS--N 64
          A L+ V+   +LV  + GR      ++  T+   S  +L++LGY+ ++++   R  S  N
Sbjct: 5  ALLLFVMLTFLLVIEMEGRIL---RVNSKTKDGESNDLLKRLGYNVSELKRIGRELSVQN 64

Query: 65 SIDRYTPGGPDSQHHSQP 81
           +DR++PGGPD QHHS P
Sbjct: 65 EVDRFSPGGPDPQHHSYP 79

The following BLAST results are available for this feature:

BLAST of MC04g0096 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8N1	1.6e-04	35.90	CLAVATA3/ESR (CLE)-related protein 7 OS=Arabidopsis thaliana OX=3702 GN=CLE7 PE=...	[more]

BLAST of MC04g0096 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589262.1	1.89e-29	67.06	hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0061638.1	2.29e-26	68.18	hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa] >TYK0586...	[more]
KAG6572409.1	2.29e-25	59.14	hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8647339.1	1.32e-20	61.25	hypothetical protein Csa_003556, partial [Cucumis sativus]	[more]
MBA0739247.1	4.66e-09	48.98	hypothetical protein [Gossypium gossypioides]	[more]

BLAST of MC04g0096 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C664	1.11e-26	68.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KGI4	2.55e-23	62.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419510 PE=3 SV=1	[more]
A0A7J9BSX3	2.25e-09	48.98	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_012535 PE=3 ...	[more]
A0A2P5YW95	9.10e-09	46.94	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G002500v1 PE...	[more]
A0A5D2TG78	9.10e-09	46.94	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A09G002300v1 P...	[more]

BLAST of MC04g0096 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31082.1	1.1e-05	35.90	CLAVATA3/ESR-RELATED 7	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..84
None	No IPR available	PANTHER	PTHR36016:SF9	SUBFAMILY NOT NAMED	coord: 6..84
IPR039617	CLAVATA3/ESR (CLE)-related protein	PANTHER	PTHR36016	CLAVATA3/ESR (CLE)-RELATED PROTEIN 7	coord: 6..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0096.1	MC04g0096.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0005576	extracellular region