MC03g_new0205 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g_new0205
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	PMD domain-containing protein
Location	MC03: 9135011 .. 9136265 (-)
RNA-Seq Expression	MC03g_new0205
Synteny	MC03g_new0205

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGAAAATTAATTCATGAAGGTAGGTCCGTAGCATAACATGTGAATGTTCACTCTAGGAATAAAGATGAACTTCTAAAGGATAATGGCAGCTTGTCATCCACAAAATGTTCGTACTTCTCAAGTCTTAAGTCATGTTATTTATTCTCTTGATGTGGAAACTCGATGGTTATTGAATCTTATAACGCTTATCGATTTGGTCGTCAGTTTGGGTTTTATCAAGACATTCCGAATTATTTTAGAGAAATTACTCCCCCAATCAATTTGGACAATGTTTTATATCATTGGAGGATTTGCACTCAAAATTGCACATCGTCGCAGATATTTCTTCCGGCTCATACGCTAGATCCTCATGAACAAGTTACTTCTCGTTACAAAAGCTGGTGGTCAATTAAGCATGGAGACTACTTTGAGAAATGTATAGTGAAGTTAGTGAGTGGTGATCTTCCTTCCCCACCACCACTTAAATTACCCAAGAACAAGGAGGGTGATAGAGGAGGCAAAAGTCTTCATATAGTTGAGGATAAGGCATCTGCTCCTGCAGAAGTTGCTTCGGAATCTCCTGAAGAGAGCCAAGATAGTAATGATGAGCAACATTGGAAGGGAGTGAAGAGGGCGAAAAAAAATGCGAAATCTAACGATTAATTTTTTTGATGGTATATTGAGCACTTCTCAGATTCCAAACAATACTGGAGTTCTAGTTGAGTAGCTCGTACCTCTTTCCCTCTTTCTTACTTTTTTTTTTCAGATATTGAGGAATTTCATTGAAAATGCAGATCGGCAGCATAGTTGAGGGTGTATGATGAGTCCAAATGACCTCGATCTTACTGCCACTTGTGTTGGAGGTTTCAATGTACCAACTGAAGAGGTTGTAGTTTCTCTCACCCTTCGCCTGCAAATGTTGAGGATCATGTACCAACCAAAAAGGTGGTGCATGTTGATGTCCTTAAATTCTTCAACATATGTGTTGATGCTGCAATTTCTGACGTTCAACGACAAGTTGCTTCAGCTATGTGGGCCATTCTACATAAGAATATTATACACACTTCAATTGATAAGGCTTCATCTCTCGAACCAGAAGTGCGTAAAATTTTTCATGTTGTTTCAGGGACGTATGTAGTTAATCTTACTTCTCTCAAAGATTTTATAGGTGGCTATTTTCAGAAGGCCGCAACTTACGATAACCTACAATCCTTAGTTTCTTCTCGGCTGACTTTGACAAGTAAGGATTGCCAACTAGAGGAGTACAAACTTAG

mRNA sequence

ATGGTTATTGAATCTTATAACGCTTATCGATTTGGTCGTCAGTTTGGGTTTTATCAAGACATTCCGAATTATTTTAGAGAAATTACTCCCCCAATCAATTTGGACAATGTTTTATATCATTGGAGGATTTGCACTCAAAATTGCACATCGTCGCAGATATTTCTTCCGGCTCATACGCTAGATCCTCATGAACAAGTTACTTCTCGTTACAAAAGCTGGTGGTCAATTAAGCATGGAGACTACTTTGAGAAATGTATAGTGAAGTTAGTGAGTGGTGATCTTCCTTCCCCACCACCACTTAAATTACCCAAGAACAAGGAGGGTGATAGAGGAGGCAAAAGTCTTCATATAGTTGAGGATAAGGCATCTGCTCCTGCAGAAGTTGCTTCGGAATCTCCTGAAGAGAGCCAAGATAGTAATGATGAGCAACATTGGAAGGGAGTGAAGAGGGCGAAAAAAAATGCGAAATCTAACGATTAA

Coding sequence (CDS)

ATGGTTATTGAATCTTATAACGCTTATCGATTTGGTCGTCAGTTTGGGTTTTATCAAGACATTCCGAATTATTTTAGAGAAATTACTCCCCCAATCAATTTGGACAATGTTTTATATCATTGGAGGATTTGCACTCAAAATTGCACATCGTCGCAGATATTTCTTCCGGCTCATACGCTAGATCCTCATGAACAAGTTACTTCTCGTTACAAAAGCTGGTGGTCAATTAAGCATGGAGACTACTTTGAGAAATGTATAGTGAAGTTAGTGAGTGGTGATCTTCCTTCCCCACCACCACTTAAATTACCCAAGAACAAGGAGGGTGATAGAGGAGGCAAAAGTCTTCATATAGTTGAGGATAAGGCATCTGCTCCTGCAGAAGTTGCTTCGGAATCTCCTGAAGAGAGCCAAGATAGTAATGATGAGCAACATTGGAAGGGAGTGAAGAGGGCGAAAAAAAATGCGAAATCTAACGATTAA

Protein sequence

MVIESYNAYRFGRQFGFYQDIPNYFREITPPINLDNVLYHWRICTQNCTSSQIFLPAHTLDPHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIVEDKASAPAEVASESPEESQDSNDEQHWKGVKRAKKNAKSND

Homology

[Close]

BLAST of MC03g_new0205 vs. NCBI nr
Match: KAA0054204.1 (hypothetical protein E6C27_scaffold131G001410 [Cucumis melo var. makuwa] >TYK15059.1 hypothetical protein E5676_scaffold45G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (378), Expect = 6.50e-40
Identity = 74/152 (48.68%), Postives = 100/152 (65.79%), Query Frame = 0


Query: 2   VIESYNAYRFGRQFGFYQDIPNYFREITPPINLDNVLYHWRICTQNCTSSQIFLPAHTLD 61
           +I SYN YRFGRQFGFYQD+PNY   + P I L+N+LYHWRICT+  T S+++LPAH+L+
Sbjct: 74  IITSYNPYRFGRQFGFYQDLPNYIGGMPPAIALNNILYHWRICTRRNTLSELYLPAHSLE 133

Query: 62  PHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIVEDK 121
           P + VT R+  WW+ KHG YFE     LVS  +P P   +LPKN+  + GGK + +VE  
Sbjct: 134 PCKHVTQRFIDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAM 193

Query: 122 ASAPAEVASESPEESQDSNDEQHWKG-VKRAK 152
                E   E  +ES +S  ++H K  +K+AK
Sbjct: 194 TPNLEEEVKEHKDESDNSKSDRHSKRPLKKAK 225

[Close]

BLAST of MC03g_new0205 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (376), Expect = 3.11e-38
Identity = 73/152 (48.03%), Postives = 99/152 (65.13%), Query Frame = 0


Query: 2   VIESYNAYRFGRQFGFYQDIPNYFREITPPINLDNVLYHWRICTQNCTSSQIFLPAHTLD 61
           +I SY+ YRFGRQFGFYQD+PN    ++P I LDN+LYHWRICT+  T S+++LPA +L+
Sbjct: 458 IITSYSPYRFGRQFGFYQDLPNDIGGMSPAITLDNILYHWRICTRRNTLSELYLPARSLE 517

Query: 62  PHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIVEDK 121
           P + VT R+  WW+ KHG YFE     LVS  +P     +LPKN+  + GGK + +VE  
Sbjct: 518 PCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPSSQPRLPKNRGSNLGGKEIRLVEAM 577

Query: 122 ASAPAEVASESPEESQDSNDEQHWKG-VKRAK 152
           A    E   E  +ES  S  ++HWK  +K+AK
Sbjct: 578 APNLEEEVKERKDESDSSKSDRHWKRPLKKAK 609

[Close]

BLAST of MC03g_new0205 vs. NCBI nr
Match: KAA0025356.1 (hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (369), Expect = 2.74e-37
Identity = 69/145 (47.59%), Postives = 93/145 (64.14%), Query Frame = 0


Query: 2   VIESYNAYRFGRQFGFYQDIPNYFREITPPINLDNVLYHWRICTQNCTSSQIFLPAHTLD 61
           +I SY+ Y+F RQFGFYQD+PN    + P I LDN+LYHWRICT+  T S+++LPA +L+
Sbjct: 458 IITSYSPYKFERQFGFYQDLPNDIGGMPPAITLDNILYHWRICTRRNTLSELYLPARSLE 517

Query: 62  PHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIVEDK 121
           P + VT R+  WW+ KHG YFE     LVS  +P P   +LPKN+  + GGK + +VE  
Sbjct: 518 PCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQSRLPKNRGRNLGGKEIRLVEAM 577

Query: 122 ASAPAEVASESPEESQDSNDEQHWK 146
           A    E   E  +ES  S  ++HWK
Sbjct: 578 APNLEEEVKEHKDESDSSKSDRHWK 602

[Close]

BLAST of MC03g_new0205 vs. NCBI nr
Match: KAA0050516.1 (hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (366), Expect = 6.95e-37
Identity = 72/152 (47.37%), Postives = 101/152 (66.45%), Query Frame = 0


Query: 2   VIESYNAYRFGRQFGFYQDIPNYFREITPPINLDNVLYHWRICTQNCTSSQIFLPAHTLD 61
           +I SY++YRFGRQFGFYQD+PN    + P I LDN+LYH RICT+  T S+++LPA +L+
Sbjct: 486 IITSYSSYRFGRQFGFYQDLPNDIGGMPPAITLDNILYHLRICTRCNTLSELYLPARSLE 545

Query: 62  PHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIVEDK 121
           P + VT ++  WW+ KHG YFE     LV+  +PSP   +LPKN+  + GGK + +VE  
Sbjct: 546 PCKHVTQQFTDWWTTKHGTYFEDNRHHLVTSVIPSPSQPRLPKNRGSNLGGKEIRLVEAM 605

Query: 122 ASAPAEVASESPEESQDSNDEQHWKG-VKRAK 152
           A    E   E  +ES +S  ++HWK  +K+AK
Sbjct: 606 APNLEEEVKEHKDESNNSKSDRHWKRPLKKAK 637

[Close]

BLAST of MC03g_new0205 vs. NCBI nr
Match: KAA0042070.1 (hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa] >TYK18012.1 hypothetical protein E5676_scaffold306G003250 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 4.35e-36
Identity = 70/152 (46.05%), Postives = 101/152 (66.45%), Query Frame = 0


Query: 2   VIESYNAYRFGRQFGFYQDIPNYFREITPPINLDNVLYHWRICTQNCTSSQIFLPAHTLD 61
           +I SY+ YRFG QF F+QDIPN    + P I  DN+L+HWRICT++ T ++++LPA +L+
Sbjct: 432 IITSYSLYRFGWQFCFFQDIPNDIEAMPPAITPDNMLHHWRICTRHNTLTELYLPARSLE 491

Query: 62  PHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIVEDK 121
           P + VT R+  WWS++HG YFE  I  LVS  +P P   KLPKN+  + GGK + +VE  
Sbjct: 492 PCKHVTQRFTDWWSMRHGTYFEDNIHHLVSSVIPPPSQPKLPKNRGTNLGGKEIRLVEAM 551

Query: 122 ASAPAEVASESPEESQDSNDEQHWKG-VKRAK 152
           A+   E  +E  +E+  S  ++HWK  +K+AK
Sbjct: 552 AATLEEEINEHKDETDSSKSDRHWKRPLKKAK 583

[Close]

BLAST of MC03g_new0205 vs. ExPASy TrEMBL
Match: A0A5A7UGA8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001090 PE=4 SV=1)

HSP 1 Score: 150 bits (378), Expect = 3.15e-40
Identity = 74/152 (48.68%), Postives = 100/152 (65.79%), Query Frame = 0


Query: 2   VIESYNAYRFGRQFGFYQDIPNYFREITPPINLDNVLYHWRICTQNCTSSQIFLPAHTLD 61
           +I SYN YRFGRQFGFYQD+PNY   + P I L+N+LYHWRICT+  T S+++LPAH+L+
Sbjct: 74  IITSYNPYRFGRQFGFYQDLPNYIGGMPPAIALNNILYHWRICTRRNTLSELYLPAHSLE 133

Query: 62  PHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIVEDK 121
           P + VT R+  WW+ KHG YFE     LVS  +P P   +LPKN+  + GGK + +VE  
Sbjct: 134 PCKHVTQRFIDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAM 193

Query: 122 ASAPAEVASESPEESQDSNDEQHWKG-VKRAK 152
                E   E  +ES +S  ++H K  +K+AK
Sbjct: 194 TPNLEEEVKEHKDESDNSKSDRHSKRPLKKAK 225

[Close]

BLAST of MC03g_new0205 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 1.51e-38
Identity = 73/152 (48.03%), Postives = 99/152 (65.13%), Query Frame = 0


Query: 2   VIESYNAYRFGRQFGFYQDIPNYFREITPPINLDNVLYHWRICTQNCTSSQIFLPAHTLD 61
           +I SY+ YRFGRQFGFYQD+PN    ++P I LDN+LYHWRICT+  T S+++LPA +L+
Sbjct: 458 IITSYSPYRFGRQFGFYQDLPNDIGGMSPAITLDNILYHWRICTRRNTLSELYLPARSLE 517

Query: 62  PHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIVEDK 121
           P + VT R+  WW+ KHG YFE     LVS  +P     +LPKN+  + GGK + +VE  
Sbjct: 518 PCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPSSQPRLPKNRGSNLGGKEIRLVEAM 577

Query: 122 ASAPAEVASESPEESQDSNDEQHWKG-VKRAK 152
           A    E   E  +ES  S  ++HWK  +K+AK
Sbjct: 578 APNLEEEVKERKDESDSSKSDRHWKRPLKKAK 609

[Close]

BLAST of MC03g_new0205 vs. ExPASy TrEMBL
Match: A0A5A7SHN8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00400 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 1.33e-37
Identity = 69/145 (47.59%), Postives = 93/145 (64.14%), Query Frame = 0


Query: 2   VIESYNAYRFGRQFGFYQDIPNYFREITPPINLDNVLYHWRICTQNCTSSQIFLPAHTLD 61
           +I SY+ Y+F RQFGFYQD+PN    + P I LDN+LYHWRICT+  T S+++LPA +L+
Sbjct: 458 IITSYSPYKFERQFGFYQDLPNDIGGMPPAITLDNILYHWRICTRRNTLSELYLPARSLE 517

Query: 62  PHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIVEDK 121
           P + VT R+  WW+ KHG YFE     LVS  +P P   +LPKN+  + GGK + +VE  
Sbjct: 518 PCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQSRLPKNRGRNLGGKEIRLVEAM 577

Query: 122 ASAPAEVASESPEESQDSNDEQHWK 146
           A    E   E  +ES  S  ++HWK
Sbjct: 578 APNLEEEVKEHKDESDSSKSDRHWK 602

[Close]

BLAST of MC03g_new0205 vs. ExPASy TrEMBL
Match: A0A5A7U8L3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001600 PE=4 SV=1)

HSP 1 Score: 145 bits (366), Expect = 3.37e-37
Identity = 72/152 (47.37%), Postives = 101/152 (66.45%), Query Frame = 0


Query: 2   VIESYNAYRFGRQFGFYQDIPNYFREITPPINLDNVLYHWRICTQNCTSSQIFLPAHTLD 61
           +I SY++YRFGRQFGFYQD+PN    + P I LDN+LYH RICT+  T S+++LPA +L+
Sbjct: 486 IITSYSSYRFGRQFGFYQDLPNDIGGMPPAITLDNILYHLRICTRCNTLSELYLPARSLE 545

Query: 62  PHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIVEDK 121
           P + VT ++  WW+ KHG YFE     LV+  +PSP   +LPKN+  + GGK + +VE  
Sbjct: 546 PCKHVTQQFTDWWTTKHGTYFEDNRHHLVTSVIPSPSQPRLPKNRGSNLGGKEIRLVEAM 605

Query: 122 ASAPAEVASESPEESQDSNDEQHWKG-VKRAK 152
           A    E   E  +ES +S  ++HWK  +K+AK
Sbjct: 606 APNLEEEVKEHKDESNNSKSDRHWKRPLKKAK 637

[Close]

BLAST of MC03g_new0205 vs. ExPASy TrEMBL
Match: A0A5D3D2A0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003250 PE=4 SV=1)

HSP 1 Score: 143 bits (360), Expect = 2.11e-36
Identity = 70/152 (46.05%), Postives = 101/152 (66.45%), Query Frame = 0


Query: 2   VIESYNAYRFGRQFGFYQDIPNYFREITPPINLDNVLYHWRICTQNCTSSQIFLPAHTLD 61
           +I SY+ YRFG QF F+QDIPN    + P I  DN+L+HWRICT++ T ++++LPA +L+
Sbjct: 432 IITSYSLYRFGWQFCFFQDIPNDIEAMPPAITPDNMLHHWRICTRHNTLTELYLPARSLE 491

Query: 62  PHEQVTSRYKSWWSIKHGDYFEKCIVKLVSGDLPSPPPLKLPKNKEGDRGGKSLHIVEDK 121
           P + VT R+  WWS++HG YFE  I  LVS  +P P   KLPKN+  + GGK + +VE  
Sbjct: 492 PCKHVTQRFTDWWSMRHGTYFEDNIHHLVSSVIPPPSQPKLPKNRGTNLGGKEIRLVEAM 551

Query: 122 ASAPAEVASESPEESQDSNDEQHWKG-VKRAK 152
           A+   E  +E  +E+  S  ++HWK  +K+AK
Sbjct: 552 AATLEEEINEHKDETDSSKSDRHWKRPLKKAK 583

The following BLAST results are available for this feature:

BLAST of MC03g_new0205 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g_new0205 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054204.1	6.50e-40	48.68	hypothetical protein E6C27_scaffold131G001410 [Cucumis melo var. makuwa] >TYK150...	[more]
KAA0047478.1	3.11e-38	48.03	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]
KAA0025356.1	2.74e-37	47.59	hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa]	[more]
KAA0050516.1	6.95e-37	47.37	hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]	[more]
KAA0042070.1	4.35e-36	46.05	hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa] >TYK1801...	[more]

BLAST of MC03g_new0205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGA8	3.15e-40	48.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TX42	1.51e-38	48.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SHN8	1.33e-37	47.59	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7U8L3	3.37e-37	47.37	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D2A0	2.11e-36	46.05	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of MC03g_new0205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g_new0205.1	MC03g_new0205.1	mRNA