MC03g1359 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g1359
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	zf-RVT domain-containing protein
Location	MC03: 19335612 .. 19335979 (-)
RNA-Seq Expression	MC03g1359
Synteny	MC03g1359

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGACTTGGGGTTCCGGACTCATCTCAAGGATGTAGAGATTGTTGAATGGGCCTCTCTATCCAATCATCTTGCTTCCATCCACCTTATTTCTGCCAATGACTCATGGATTTGGCCCGTAGACAGTCACGGCCTTTACACCACCAAAACACTCCTTAATGATTTGGCCTTAAAGGGGTGTTAAATCCATCTCTAGCGAAGGTCATTTGGGGCGATCATTACCCAAAGAAGATAAAATTCTTCATTTGGTAACTTACCCACCGCACCATAAACACCCACGATAGACTGCAGCGTCGGCTCCCCTACTACACATTGTCTCCTCATTGGTGTGTCCTTTGTAAAGAAGACAGGGAATCTCCACATCACATC

mRNA sequence

TGGGACTTGGGGTTCCGGACTCATCTCAAGGATGTAGAGATTGTTGAATGGGCCTCTCTATCCAATCATCTTGCTTCCATCCACCTTATTTCTGCCAATGACTCATGGATTTGGCCCGTAGACAGTCACGGCCTTTACACCACCAAAACACTCCTTAATGATTTGGCCTTAAAGGGGAATCCATCTCTAGCGAAGGTCATTTGGGGCGATCATTACCCAAAGAAGATAAAATTCTTCATTTGGTAACTTACCCACCGCACCATAAACACCCACGATAGACTGCAGCGTCGGCTCCCCTACTACACATTGTCTCCTCATTGGTGTGTCCTTTGTAAAGAAGACAGGGAATCTCCACATCACATC

Coding sequence (CDS)

TGGGACTTGGGGTTCCGGACTCATCTCAAGGATGTAGAGATTGTTGAATGGGCCTCTCTATCCAATCATCTTGCTTCCATCCACCTTATTTCTGCCAATGACTCATGGATTTGGCCCGTAGACAGTCACGGCCTTTACACCACCAAAACACTCCTTAATGATTTGGCCTTAAAGGGGAATCCATCTCTAGCGAAGGTCATTTGGGGCGATCATTACCCAAAGAAGATAAAATTCTTCATTTGGTAACTTACCCACCGCACCATAAACACCCACGATAGACTGCAGCGTCGGCTCCCCTACTACACATTGTCTCCTCATTGGTGTGTCCTTTGTAAAGAAGACAGGGAATCTCCACATCACATC

Protein sequence

WDLGFRTHLKDVEIVEWASLSNHLASIHLISANDSWIWPVDSHGLYTTKTLLNDLALKGNPSLAKVIWGDHYPKKIKFFIWULTHRTINTHDRLQRRLPYYTLSPHWCVLCKEDRESPHHI

Homology

[Close]

BLAST of MC03g1359 vs. NCBI nr
Match: CAN63022.1 (hypothetical protein VITISV_042518 [Vitis vinifera])

HSP 1 Score: 101 bits (252), Expect = 4.47e-23
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 1   WDLGFRTHLKDVEIVEWASLSNHLASIHLI-SANDSWIWPVDSHGLYTTKTLLNDLALKG 60
           W+L FR +L D EI     L + L+S+    S  DS +W + S GL++ K+    L+   
Sbjct: 70  WNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRVWSLSSSGLFSVKSFFLALSKVS 129

Query: 61  NPSL---AKVIWGDHYPKKIKFFIWXLTHRTINTHDRLQRRLPYYTLSPHWCVLCKEDRE 120
           NP L   AK +W    P K+K   W + H  +NT+D+LQ R PY +L P WC+LCK +RE
Sbjct: 130 NPILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNRE 189

[Close]

BLAST of MC03g1359 vs. NCBI nr
Match: CAN72548.1 (hypothetical protein VITISV_035350, partial [Vitis vinifera])

HSP 1 Score: 99.0 bits (245), Expect = 4.35e-22
Identity = 50/125 (40.00%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 1   WDLGFRTHLKDVEIVEWASLSNHLASIHLI-SANDSWIWPVDSHGLYTTKTLLNDLALKG 60
           W+L FR +L D EI     L + L+S+    S  DS  W + S GL+T K+    L+   
Sbjct: 78  WNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLSSSGLFTVKSFFLALSKVS 137

Query: 61  NPSL---AKVIWGDHYPKKIKFFIWXLTHRTINTHDRLQRRLPYYTLSPHWCVLCKEDRE 120
           NP L   AK +W    P K+K   W + H  +NT+D+LQ R PY  L P WC+LCK + E
Sbjct: 138 NPILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKALCPQWCILCKANGE 197

[Close]

BLAST of MC03g1359 vs. NCBI nr
Match: RVX05099.1 (hypothetical protein CK203_020224 [Vitis vinifera])

HSP 1 Score: 100 bits (249), Expect = 5.83e-22
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 1   WDLGFRTHLKDVEIVEWASLSNHLASIHLI-SANDSWIWPVDSHGLYTTKTLLNDLALK- 60
           W+L FR +L D EI +   L   L  +HL  S  D+ +WP+ S GL++ K+    LAL  
Sbjct: 218 WNLNFRRNLSDSEIEDLEGLMRSLDGVHLSPSVPDARLWPLSSSGLFSVKSFF--LALSQ 277

Query: 61  --GNPSL--AKVIWGDHYPKKIKFFIWXLTHRTINTHDRLQRRLPYYTLSPHWCVLCKED 120
             G+P +  +K +W    P K++ FIW +TH+ +NT+D LQ R PY  LSP  C+LC + 
Sbjct: 278 CFGSPQVFPSKFVWNSQIPFKVQSFIWLVTHKKVNTNDMLQVRRPYKALSPDICILCMKQ 337

[Close]

BLAST of MC03g1359 vs. NCBI nr
Match: RVW74148.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 100 bits (249), Expect = 9.83e-22
Identity = 52/125 (41.60%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 1   WDLGFRTHLKDVEIVEWASLSNHLASIHLI-SANDSWIWPVDSHGLYTTKTLLNDLA-LK 60
           W+  FR +L D EI E  SL   L  +HL  S  D   W + S GL+T K+    L+ + 
Sbjct: 178 WNFNFRRNLSDYEIEELESLMQSLDHLHLSPSIPDKRSWSLSSSGLFTVKSFFLALSQIS 237

Query: 61  GNPSL--AKVIWGDHYPKKIKFFIWXLTHRTINTHDRLQRRLPYYTLSPHWCVLCKEDRE 120
           G PS+   K++W    P KIKFF+W + H+ +NT+D LQ R PY  LSP  C+LC E  E
Sbjct: 238 GLPSVFPTKLVWNSQVPFKIKFFVWLVAHKKVNTNDMLQLRRPYKALSPDICMLCMERGE 297

[Close]

BLAST of MC03g1359 vs. NCBI nr
Match: CAN73539.1 (hypothetical protein VITISV_037097 [Vitis vinifera])

HSP 1 Score: 100 bits (249), Expect = 9.83e-22
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 1   WDLGFRTHLKDVEIVEWASLSNHLASIHLI-SANDSWIWPVDSHGLYTTKTLLNDLALKG 60
           W+L FR +L D EI     L + L+S+    S  DS +W + S GL++ K+    L+   
Sbjct: 754 WNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRVWSLSSSGLFSVKSFFLALSKVS 813

Query: 61  NPSL---AKVIWGDHYPKKIKFFIWXLTHRTINTHDRLQRRLPYYTLSPHWCVLCKEDRE 120
           NP L   AK +W    P K+K  +W + H  +NT+D+LQ R PY +L P WC+LCK + E
Sbjct: 814 NPILFLPAKFLWSSKVPSKVKALVWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGE 873

[Close]

BLAST of MC03g1359 vs. ExPASy TrEMBL
Match: A5B0J0 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_042518 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 2.17e-23
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 1   WDLGFRTHLKDVEIVEWASLSNHLASIHLI-SANDSWIWPVDSHGLYTTKTLLNDLALKG 60
           W+L FR +L D EI     L + L+S+    S  DS +W + S GL++ K+    L+   
Sbjct: 70  WNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRVWSLSSSGLFSVKSFFLALSKVS 129

Query: 61  NPSL---AKVIWGDHYPKKIKFFIWXLTHRTINTHDRLQRRLPYYTLSPHWCVLCKEDRE 120
           NP L   AK +W    P K+K   W + H  +NT+D+LQ R PY +L P WC+LCK +RE
Sbjct: 130 NPILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNRE 189

[Close]

BLAST of MC03g1359 vs. ExPASy TrEMBL
Match: A5BP42 (zf-RVT domain-containing protein (Fragment) OS=Vitis vinifera OX=29760 GN=VITISV_035350 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.11e-22
Identity = 50/125 (40.00%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 1   WDLGFRTHLKDVEIVEWASLSNHLASIHLI-SANDSWIWPVDSHGLYTTKTLLNDLALKG 60
           W+L FR +L D EI     L + L+S+    S  DS  W + S GL+T K+    L+   
Sbjct: 78  WNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLSSSGLFTVKSFFLALSKVS 137

Query: 61  NPSL---AKVIWGDHYPKKIKFFIWXLTHRTINTHDRLQRRLPYYTLSPHWCVLCKEDRE 120
           NP L   AK +W    P K+K   W + H  +NT+D+LQ R PY  L P WC+LCK + E
Sbjct: 138 NPILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKALCPQWCILCKANGE 197

[Close]

BLAST of MC03g1359 vs. ExPASy TrEMBL
Match: A0A438J810 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_020224 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 2.82e-22
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 1   WDLGFRTHLKDVEIVEWASLSNHLASIHLI-SANDSWIWPVDSHGLYTTKTLLNDLALK- 60
           W+L FR +L D EI +   L   L  +HL  S  D+ +WP+ S GL++ K+    LAL  
Sbjct: 218 WNLNFRRNLSDSEIEDLEGLMRSLDGVHLSPSVPDARLWPLSSSGLFSVKSFF--LALSQ 277

Query: 61  --GNPSL--AKVIWGDHYPKKIKFFIWXLTHRTINTHDRLQRRLPYYTLSPHWCVLCKED 120
             G+P +  +K +W    P K++ FIW +TH+ +NT+D LQ R PY  LSP  C+LC + 
Sbjct: 278 CFGSPQVFPSKFVWNSQIPFKVQSFIWLVTHKKVNTNDMLQVRRPYKALSPDICILCMKQ 337

[Close]

BLAST of MC03g1359 vs. ExPASy TrEMBL
Match: A0A438GPP0 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_8 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 4.76e-22
Identity = 52/125 (41.60%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 1   WDLGFRTHLKDVEIVEWASLSNHLASIHLI-SANDSWIWPVDSHGLYTTKTLLNDLA-LK 60
           W+  FR +L D EI E  SL   L  +HL  S  D   W + S GL+T K+    L+ + 
Sbjct: 178 WNFNFRRNLSDYEIEELESLMQSLDHLHLSPSIPDKRSWSLSSSGLFTVKSFFLALSQIS 237

Query: 61  GNPSL--AKVIWGDHYPKKIKFFIWXLTHRTINTHDRLQRRLPYYTLSPHWCVLCKEDRE 120
           G PS+   K++W    P KIKFF+W + H+ +NT+D LQ R PY  LSP  C+LC E  E
Sbjct: 238 GLPSVFPTKLVWNSQVPFKIKFFVWLVAHKKVNTNDMLQLRRPYKALSPDICMLCMERGE 297

[Close]

BLAST of MC03g1359 vs. ExPASy TrEMBL
Match: A5AMF5 (F-box domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_037097 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 4.76e-22
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 1   WDLGFRTHLKDVEIVEWASLSNHLASIHLI-SANDSWIWPVDSHGLYTTKTLLNDLALKG 60
           W+L FR +L D EI     L + L+S+    S  DS +W + S GL++ K+    L+   
Sbjct: 754 WNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRVWSLSSSGLFSVKSFFLALSKVS 813

Query: 61  NPSL---AKVIWGDHYPKKIKFFIWXLTHRTINTHDRLQRRLPYYTLSPHWCVLCKEDRE 120
           NP L   AK +W    P K+K  +W + H  +NT+D+LQ R PY +L P WC+LCK + E
Sbjct: 814 NPILFLPAKFLWSSKVPSKVKALVWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGE 873

The following BLAST results are available for this feature:

BLAST of MC03g1359 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g1359 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN63022.1	4.47e-23	40.00	hypothetical protein VITISV_042518 [Vitis vinifera]	[more]
CAN72548.1	4.35e-22	40.00	hypothetical protein VITISV_035350, partial [Vitis vinifera]	[more]
RVX05099.1	5.83e-22	40.94	hypothetical protein CK203_020224 [Vitis vinifera]	[more]
RVW74148.1	9.83e-22	41.60	putative ribonuclease H protein [Vitis vinifera]	[more]
CAN73539.1	9.83e-22	39.20	hypothetical protein VITISV_037097 [Vitis vinifera]	[more]

BLAST of MC03g1359 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5B0J0	2.17e-23	40.00	zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_042518 PE=...	[more]
A5BP42	2.11e-22	40.00	zf-RVT domain-containing protein (Fragment) OS=Vitis vinifera OX=29760 GN=VITISV...	[more]
A0A438J810	2.82e-22	40.94	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=CK...	[more]
A0A438GPP0	4.76e-22	41.60	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_8 PE=...	[more]
A5AMF5	4.76e-22	39.20	F-box domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_037097 PE=4...	[more]

BLAST of MC03g1359 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 60..120 e-value: 9.1E-9 score: 35.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g1359.1	MC03g1359.1	mRNA