MC03g0990 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0990
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RPM1-interacting protein 4-like
Location	MC03: 16388763 .. 16388960 (+)
RNA-Seq Expression	MC03g0990
Synteny	MC03g0990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCAGCAGGACAGGGGTCGTCCACTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCGGAAGGATTTACAGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACCACTGGAACTGCTGCCAGCACGGTTTCACCTCAGAGAAATGAGTCTATCTATAACAATGAAACTTTCCCTCAATATCATCCA

mRNA sequence

TTGCAGCAGGACAGGGGTCGTCCACTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCGGAAGGATTTACAGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACCACTGGAACTGCTGCCAGCACGGTTTCACCTCAGAGAAATGAGTCTATCTATAACAATGAAACTTTCCCTCAATATCATCCA

Coding sequence (CDS)

TTGCAGCAGGACAGGGGTCGTCCACTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCGGAAGGATTTACAGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACCACTGGAACTGCTGCCAGCACGGTTTCACCTCAGAGAAATGAGTCTATCTATAACAATGAAACTTTCCCTCAATATCATCCA

Protein sequence

LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHP

Homology

[Close]

BLAST of MC03g0990 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-14
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 4  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAAS 46
          D+GRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   S
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 44

[Close]

BLAST of MC03g0990 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-06
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 9   LPKFGEWDVNNPASAEGFTVIFNKARDEKKT-TGTAASTVSPQRNESIYNNET 61
           +PKFG+WD NNP+SA+G+T IFNK R+E+ +    + S+ +P    S   N T
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPNNT 200

[Close]

BLAST of MC03g0990 vs. NCBI nr
Match: XP_022137179.1 (uncharacterized protein LOC111008714 isoform X1 [Momordica charantia])

HSP 1 Score: 138 bits (348), Expect = 2.65e-40
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1   LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNET 60
            +QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNET
Sbjct: 62  FEQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNET 121

Query: 61  FPQYHP 66
           FPQYHP
Sbjct: 122 FPQYHP 127

[Close]

BLAST of MC03g0990 vs. NCBI nr
Match: XP_022137180.1 (uncharacterized protein LOC111008714 isoform X2 [Momordica charantia])

HSP 1 Score: 136 bits (342), Expect = 2.11e-39
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 3   QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 62
           +DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP
Sbjct: 63  EDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 122

Query: 63  QYHP 66
           QYHP
Sbjct: 123 QYHP 126

[Close]

BLAST of MC03g0990 vs. NCBI nr
Match: XP_008439256.1 (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 113 bits (283), Expect = 3.63e-31
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 3  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 62
          QDRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE++P
Sbjct: 4  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNESYP 63

Query: 63 QYHP 66
          QY P
Sbjct: 64 QYPP 67

[Close]

BLAST of MC03g0990 vs. NCBI nr
Match: XP_008439265.1 (PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo])

HSP 1 Score: 112 bits (280), Expect = 1.01e-30
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNET 60
          +  DRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE+
Sbjct: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNES 60

Query: 61 FPQYHP 66
          +PQY P
Sbjct: 61 YPQYPP 66

[Close]

BLAST of MC03g0990 vs. NCBI nr
Match: XP_022954832.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_023542808.1 RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo] >KAG6573102.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012289.1 RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111 bits (278), Expect = 2.10e-30
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 3  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 62
          QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTG+ A+ VS Q NE  YNNE+FP
Sbjct: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFP 63

Query: 63 QYHP 66
          Q  P
Sbjct: 64 QSPP 67

[Close]

BLAST of MC03g0990 vs. ExPASy TrEMBL
Match: A0A6J1C6I4 (uncharacterized protein LOC111008714 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008714 PE=4 SV=1)

HSP 1 Score: 138 bits (348), Expect = 1.28e-40
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1   LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNET 60
            +QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNET
Sbjct: 62  FEQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNET 121

Query: 61  FPQYHP 66
           FPQYHP
Sbjct: 122 FPQYHP 127

[Close]

BLAST of MC03g0990 vs. ExPASy TrEMBL
Match: A0A6J1C5Z3 (uncharacterized protein LOC111008714 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008714 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 1.02e-39
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 3   QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 62
           +DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP
Sbjct: 63  EDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 122

Query: 63  QYHP 66
           QYHP
Sbjct: 123 QYHP 126

[Close]

BLAST of MC03g0990 vs. ExPASy TrEMBL
Match: A0A1S3AZ04 (RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 1.76e-31
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 3  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 62
          QDRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE++P
Sbjct: 4  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNESYP 63

Query: 63 QYHP 66
          QY P
Sbjct: 64 QYPP 67

[Close]

BLAST of MC03g0990 vs. ExPASy TrEMBL
Match: A0A1S3AYE6 (RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 4.91e-31
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNET 60
          +  DRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE+
Sbjct: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNES 60

Query: 61 FPQYHP 66
          +PQY P
Sbjct: 61 YPQYPP 66

[Close]

BLAST of MC03g0990 vs. ExPASy TrEMBL
Match: A0A6J1GRZ4 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111456977 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 1.02e-30
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 3  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 62
          QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTG+ A+ VS Q NE  YNNE+FP
Sbjct: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFP 63

Query: 63 QYHP 66
          Q  P
Sbjct: 64 QSPP 67

[Close]

BLAST of MC03g0990 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 80.9 bits (198), Expect = 4.3e-16
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA----STVSPQRNESIY 60
          + +++G+PLPKFGEWDVNNPASAEGFTVIF+KA DEKKT   +     S VSPQRN++  
Sbjct: 1  MAENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSD 60

Query: 61 NNETFPQYHP 67
           N      +P
Sbjct: 61 QNNNHSSQNP 70

[Close]

BLAST of MC03g0990 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 3  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAAS 46
          +D+GRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   S
Sbjct: 18 RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60

[Close]

BLAST of MC03g0990 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 3  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAAS 46
          +D+GRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   S
Sbjct: 18 RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60

[Close]

BLAST of MC03g0990 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-15
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 4  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAAS 46
          D+GRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   S
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 44

[Close]

BLAST of MC03g0990 vs. TAIR 10
Match: AT3G48450.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 77.4 bits (189), Expect = 4.8e-15
Identity = 39/54 (72.22%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 4  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA----STVSPQRNE 54
          +R RPLPKFGEWD  NP SAEGFTVIFNKARD+KKT  TA     S VSP RNE
Sbjct: 5  NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTAVAGPESIVSPPRNE 58

The following BLAST results are available for this feature:

BLAST of MC03g0990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	2.3e-14	85.71	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	3.9e-06	45.28	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of MC03g0990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137179.1	2.65e-40	96.97	uncharacterized protein LOC111008714 isoform X1 [Momordica charantia]	[more]
XP_022137180.1	2.11e-39	98.44	uncharacterized protein LOC111008714 isoform X2 [Momordica charantia]	[more]
XP_008439256.1	3.63e-31	79.69	PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]	[more]
XP_008439265.1	1.01e-30	75.76	PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo]	[more]
XP_022954832.1	2.10e-30	81.25	RPM1-interacting protein 4-like [Cucurbita moschata] >XP_023542808.1 RPM1-intera...	[more]

BLAST of MC03g0990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6I4	1.28e-40	96.97	uncharacterized protein LOC111008714 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C5Z3	1.02e-39	98.44	uncharacterized protein LOC111008714 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A1S3AZ04	1.76e-31	79.69	RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE...	[more]
A0A1S3AYE6	4.91e-31	75.76	RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484092 PE...	[more]
A0A6J1GRZ4	1.02e-30	81.25	RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111456977 PE...	[more]

BLAST of MC03g0990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63270.1	4.3e-16	57.14	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	1.3e-15	83.72	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	1.3e-15	83.72	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.1	1.6e-15	85.71	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT3G48450.1	4.8e-15	72.22	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 4..39 e-value: 1.8E-24 score: 84.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..66
None	No IPR available	PANTHER	PTHR33159:SF69	RPM1-INTERACTING PROTEIN 4-LIKE	coord: 2..56
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 2..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0990.1	MC03g0990.1	mRNA