MC03g0796 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0796
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA ligase 1
Location	MC03: 14657637 .. 14660430 (-)
RNA-Seq Expression	MC03g0796
Synteny	MC03g0796

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTACCCCTCGACTTTTCCCTCCAAATTGATTTTCGCTCTCCAATTTCAAACCGCTTCTCAGTCCCTCGATTTTTCCCTCTCCAATTTCAATTGCCGCCTCACACCCCCTCGATTATTCCCTCTCTTTCTTCGTCCCGACGCTATCGCTACCCACCAAAGCCGTCACCGTCGCTGCATTCCGCTGAAGCGGCTGCCGCCATCGCCATCGCATCGTTTCTGGAGGTCTCAGACTCTCTGCAACATCTGCTCTCACCGTTATAAAGCATCGTAATCTTGTGGTGGTGTTAAAGAATGGCTCACTTTTGTTGCATTATTTAGAATTGTTTTCAGGTTCTCGGAGTTGAGTGGAACGTGAGTCAGCTGGAAATTCAGAAAGCTTTCCACAAGTATTCTCTTGAACTGCCATCCAAAATTAACGTTCCTCTTCAATTTGATTCAACTCCACTTGTATTGTAATTAACACTCCGAAACTATACAATTATCGATCTGCAACTCTGAAGTTTTCTTGAACCTCGATTTCAGATGGGGAACATTAAAATTCCTACTGCTAAAACAAGAACCAGGAAGCGAGTCTCTGATCCCGATCTCACGAGCTCCGATCAAAGGAAGCGGACCGGCAATGATATTGACCTCGATCTCGACCTTTCCGAGTACGTACTATTTCCATTTCTGTTGCACTTTCTACTGATTTTCAGAAGCTTGATAATGATATCTGCTATGTGCAGCGATCTCAAAGGGATAGTGTCGGCACTGAATCAGATAAGAGAGAAAGCTCAGAAGGACGACCAGAAAAAGAATGAAGAGACTATCTCAAGGTAATTTGAGTGGTTTTGCTCGATCGGAAATTATTGATACTTATTTAATTGATAGGAGTAGCTGAAACTGTGTATTCTTGTGCGTATTTTCGATTCTCGAATTTCTGGACATGGCTGCTGATTTGCGCCTCATTTGTTTCTTTTAGTAGATTTGAACTGACCTCTGTAGTGATTTGATTCTATTATTTACGTGATGTGATTTCATTATAAAATTCAAATGGTTGCCTGATTCAAACTTGACTTTCTGGATCAGACTTGATCCGCCTCACCGTTTCTGTCAAACATTTGGCTGTTTTCCAACTTCGATCCGTGTCGCTCCTTTTTAATGACAGTTAAATTATTTTCTTAGCTAATGCTTCTCTTCATGTCGTTCACTAAAACGATTTTTTTAATGTTTACATTTTGACAGTGTATCCTCTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGTAGGTAACTCGATTGTGAGCATTTTCACTTGATCGAAATCTTCCGGTTCAGGACAGTTGCTCGCTTCTGTTTTTGGTTGAATTAGTACACAGAATAAAATCAATTTATTTTCCCCAACTAATTTCAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGGTTGGTGGAGAACAAATATACTCGGAATATAGACCATTCATATTCAAGAGCAAATTCAGTCATTCTATTTTGTTTTAGTTCCATTGTACATTATCCACGTGTTGCGTTGAAATTAATTTGGCTTCTTTATAGTGCGAAAACTGTTTAAAGGACGAAACTGCTAAATTCCAAGCACTTCACGAGAAATTCACAAAAGAGAGAGCCACACACCTCCAGGCCATAAAAGGTAATATCCACTTCGAGTAATTTGGTGAAAAATTTTGCATTATTTAGTCATTACTTCTGTTTAGATTAATTTGCACTTTATTTATCAAACATCAACTATCGCATTCATGAGGTTAGGTTTCAATCTAGTAAATATTCACTTAACGTGAGGCCTTACCAATGAATAAGCAAACCCTTGTCATTTATAATTTCCAAATATCGCATTCATCAGGTTAGGTTTCAATCTGGTAAATATTCCAAATATATACAGAGTACAGACCATGGGCTTATGATCTTAAATCATTCAAGTTCAAGACGATTCTCTAAATAGTTCCCCCCACCCCTTTTTGGTTATGTTTTTAATTTCAGATGCTGTTTGGCTTTGCAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGTAAGTAAGAAGTTGTACATCAATGAGCACCGAACGTTATATTATCTATTTGCCTTTGCATCTGTAACAGGAAAGAGAGAAAGGAACCTGATATCTGAACAAGAGAAAGCTTGTGCTGACAAAATTGCTCAACTGGAGGAGTCGTTGAAAAGGAAAAAGCAGGTATACGATCAGTAATTCATAAAATTATCACCAACGCCTTCCCCCTTCTATGCTAAGGTGCTCCTTATAACACTTCGATCTGGAACACAGGATGATAAGACTTTCAGCCTTTTGCGGAAAACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCGGAAGATTGAAGGTGTTAATGCATTGAGCAGTGCTGAAAACATTCATGTAAGATTCCTCCGCATCATTCTCTGAAATACTTTGAAAATACCACACATCACACACCAACATTAGACAAACAATTTGCATTGCTTTAGTGTCTAGTCTACATTCTCGTATAGGCATATTCCTCTTTTAAGGGTCCTCTTAATAGTCTGGATTGGAAATTGAGCGTTAAGGGCCATTTCCTTTATCTTAATTGTTGGCCTTATGGCTGTAGCCACTTTGCCTCTCTAATTCTGCCAATCTCTATGAATTGTGAAGTTGTCTTAATTGCATCATCTCTATTATTAAGCGTTTTTGGCCATTCATGACACCGTCT

mRNA sequence

CCTACCCCTCGACTTTTCCCTCCAAATTGATTTTCGCTCTCCAATTTCAAACCGCTTCTCAGTCCCTCGATTTTTCCCTCTCCAATTTCAATTGCCGCCTCACACCCCCTCGATTATTCCCTCTCTTTCTTCGTCCCGACGCTATCGCTACCCACCAAAGCCGTCACCGTCGCTGCATTCCGCTGAAGCGGCTGCCGCCATCGCCATCGCATCGTTTCTGGAGAATTGTTTTCAGGTTCTCGGAGTTGAGTGGAACGTGAGTCAGCTGGAAATTCAGAAAGCTTTCCACAAATGGGGAACATTAAAATTCCTACTGCTAAAACAAGAACCAGGAAGCGAGTCTCTGATCCCGATCTCACGAGCTCCGATCAAAGGAAGCGGACCGGCAATGATATTGACCTCGATCTCGACCTTTCCGACGATCTCAAAGGGATAGTGTCGGCACTGAATCAGATAAGAGAGAAAGCTCAGAAGGACGACCAGAAAAAGAATGAAGAGACTATCTCAAGTGTATCCTCTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGTGCGAAAACTGTTTAAAGGACGAAACTGCTAAATTCCAAGCACTTCACGAGAAATTCACAAAAGAGAGAGCCACACACCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAACCTGATATCTGAACAAGAGAAAGCTTGTGCTGACAAAATTGCTCAACTGGAGGAGTCGTTGAAAAGGAAAAAGCAGGATGATAAGACTTTCAGCCTTTTGCGGAAAACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCGGAAGATTGAAGGTGTTAATGCATTGAGCAGTGCTGAAAACATTCATGTAAGATTCCTCCGCATCATTCTCTGAAATACTTTGAAAATACCACACATCACACACCAACATTAGACAAACAATTTGCATTGCTTTAGTGTCTAGTCTACATTCTCGTATAGGCATATTCCTCTTTTAAGGGTCCTCTTAATAGTCTGGATTGGAAATTGAGCGTTAAGGGCCATTTCCTTTATCTTAATTGTTGGCCTTATGGCTGTAGCCACTTTGCCTCTCTAATTCTGCCAATCTCTATGAATTGTGAAGTTGTCTTAATTGCATCATCTCTATTATTAAGCGTTTTTGGCCATTCATGACACCGTCT

Coding sequence (CDS)

ATGGGGAACATTAAAATTCCTACTGCTAAAACAAGAACCAGGAAGCGAGTCTCTGATCCCGATCTCACGAGCTCCGATCAAAGGAAGCGGACCGGCAATGATATTGACCTCGATCTCGACCTTTCCGACGATCTCAAAGGGATAGTGTCGGCACTGAATCAGATAAGAGAGAAAGCTCAGAAGGACGACCAGAAAAAGAATGAAGAGACTATCTCAAGTGTATCCTCTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGTGCGAAAACTGTTTAAAGGACGAAACTGCTAAATTCCAAGCACTTCACGAGAAATTCACAAAAGAGAGAGCCACACACCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAACCTGATATCTGAACAAGAGAAAGCTTGTGCTGACAAAATTGCTCAACTGGAGGAGTCGTTGAAAAGGAAAAAGCAGGATGATAAGACTTTCAGCCTTTTGCGGAAAACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCGGAAGATTGA

Protein sequence

MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED

Homology

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BLAST of MC03g0796 vs. NCBI nr
Match: XP_022140180.1 (DNA ligase 1 [Momordica charantia] >XP_022140181.1 DNA ligase 1 [Momordica charantia] >XP_022140182.1 DNA ligase 1 [Momordica charantia])

HSP 1 Score: 392 bits (1006), Expect = 9.92e-137
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60
           MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ
Sbjct: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60

Query: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180
           LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE
Sbjct: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216
           ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216

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BLAST of MC03g0796 vs. NCBI nr
Match: XP_023001751.1 (DNA ligase 1 [Cucurbita maxima])

HSP 1 Score: 367 bits (941), Expect = 7.99e-127
Identity = 200/216 (92.59%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60
           MGN+KIP AKTRTRKRVSDPDLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQ
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSVS+EIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180
           L+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDFP +D
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

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BLAST of MC03g0796 vs. NCBI nr
Match: XP_022927498.1 (DNA ligase 1 [Cucurbita moschata] >KAG6583999.1 hypothetical protein SDJN03_19931, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019621.1 hypothetical protein SDJN02_18584, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362 bits (929), Expect = 5.38e-125
Identity = 199/216 (92.13%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60
           MGN+KIP AKTRTRKRVSD DLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQ
Sbjct: 1   MGNMKIPIAKTRTRKRVSDSDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSVS+EIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180
           L+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDF A+D
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

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BLAST of MC03g0796 vs. NCBI nr
Match: XP_023520366.1 (DNA ligase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358 bits (920), Expect = 1.27e-123
Identity = 197/216 (91.20%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60
           MGN+KIP AKTRTRKRVS+ DLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQ
Sbjct: 1   MGNMKIPIAKTRTRKRVSESDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSVS+EIR MIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRAMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180
           L+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDF A+D
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

[Close]

BLAST of MC03g0796 vs. NCBI nr
Match: XP_004146600.1 (DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X1 [Cucumis sativus] >KGN64675.1 hypothetical protein Csa_013771 [Cucumis sativus])

HSP 1 Score: 357 bits (915), Expect = 7.31e-123
Identity = 195/216 (90.28%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60
           MGNIKIPTAKTR+RKRVSD DL+SSDQRK+T +DIDLDLDLSDDLKGIVSALNQI+E+A 
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSV++E+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180
           L+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPA+D
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

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BLAST of MC03g0796 vs. ExPASy TrEMBL
Match: A0A6J1CEE2 (DNA ligase 1 OS=Momordica charantia OX=3673 GN=LOC111010912 PE=4 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 4.80e-137
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60
           MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ
Sbjct: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60

Query: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180
           LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE
Sbjct: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216
           ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216

[Close]

BLAST of MC03g0796 vs. ExPASy TrEMBL
Match: A0A6J1KJH3 (DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1)

HSP 1 Score: 367 bits (941), Expect = 3.87e-127
Identity = 200/216 (92.59%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60
           MGN+KIP AKTRTRKRVSDPDLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQ
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSVS+EIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180
           L+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDFP +D
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]

BLAST of MC03g0796 vs. ExPASy TrEMBL
Match: A0A6J1EL64 (DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1)

HSP 1 Score: 362 bits (929), Expect = 2.61e-125
Identity = 199/216 (92.13%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60
           MGN+KIP AKTRTRKRVSD DLTSSD+RKRT  DIDLDLDLSDDLKGIVSALNQI+E+AQ
Sbjct: 1   MGNMKIPIAKTRTRKRVSDSDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120
           KDDQKKNEETISSVS+EIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180
           L+EKFTKE+ATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDF A+D
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

[Close]

BLAST of MC03g0796 vs. ExPASy TrEMBL
Match: A0A0A0LRW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1)

HSP 1 Score: 357 bits (915), Expect = 3.54e-123
Identity = 195/216 (90.28%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60
           MGNIKIPTAKTR+RKRVSD DL+SSDQRK+T +DIDLDLDLSDDLKGIVSALNQI+E+A 
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSV++E+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180
           L+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPA+D
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of MC03g0796 vs. ExPASy TrEMBL
Match: A0A5D3DS94 (DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00780 PE=4 SV=1)

HSP 1 Score: 352 bits (904), Expect = 1.68e-121
Identity = 194/216 (89.81%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MGNIKIPTAKTRTRKRVSDPDLTSSDQRKRTGNDIDLDLDLSDDLKGIVSALNQIREKAQ 60
           M NIKIPTAKTR+RKRVSD DLTSS+QR RT +DIDLDLDLSDDLKGIVSALNQI+E+A 
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSV++E+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LHEKFTKERATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACADKIAQLE 180
           L+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACA+KIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPAED 216
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPA+D
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of MC03g0796 vs. TAIR 10
Match: AT2G33793.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-61
Identity = 122/182 (67.03%), Postives = 158/182 (86.81%), Query Frame = 0


Query: 36  DLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDRQS 95
           +LD+D+S D KGI+SAL Q REKA +D +KK EE+ISSVS+E+++ I+E+KSK EK+RQ+
Sbjct: 31  ELDVDVSSDFKGIMSALQQFREKAHEDGRKKKEESISSVSTEVKSKIDELKSKLEKERQN 90

Query: 96  FAKALSKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAKYE 155
           F+KALSKSSKECEN LKDE AKF+ LH+KF K++A HLQ +KDTISKFEE+KERL+ +YE
Sbjct: 91  FSKALSKSSKECENILKDEAAKFEELHKKFVKDKADHLQGLKDTISKFEEDKERLYMRYE 150

Query: 156 QLRKRERNLISEQEKACADKIAQLEESLKRKKQDDKTFSLLRKTLGSFLET-GSDEDFPA 215
           QLRK+E+ +I+EQEK C +K+AQLEESLK+KK+ DKTFS+LRKTLGSFLE   SDE+FP 
Sbjct: 151 QLRKKEKTMITEQEKFCTEKLAQLEESLKKKKRGDKTFSILRKTLGSFLENEASDEEFPP 210

Query: 216 ED 217
           ++
Sbjct: 211 DE 212

[Close]

BLAST of MC03g0796 vs. TAIR 10
Match: AT2G46980.2 (unknown protein; Has 3995 Blast hits to 3325 proteins in 374 species: Archae - 19; Bacteria - 205; Metazoa - 2201; Fungi - 364; Plants - 149; Viruses - 22; Other Eukaryotes - 1035 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 8.6e-05
Identity = 42/152 (27.63%), Postives = 68/152 (44.74%), Query Frame = 0


Query: 34  DIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDR 93
           D D D  L   +     AL     K +   +KK+ E I+SVS EI   +E +KS    + 
Sbjct: 619 DEDEDEGLGRAVALFAMALQNFERKLKSAAEKKSSEIIASVSEEIHLELENIKSHIITEA 678

Query: 94  QSFAKALSKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAK 153
              +       K  E  L+++  K + +HEKF  + + HL+  K TI + E  +  L   
Sbjct: 679 GKTSNLAKTKRKHAETRLQEQEEKMRMIHEKFKDDVSHHLEDFKSTIEELEANQSELKGS 738

Query: 154 YEQLRKRERNLISEQEKACADKIAQLEESLKR 186
            ++ R   + LI+  E     K   L+++ KR
Sbjct: 739 IKKQRTSHQKLIAHFEGGIETK---LDDATKR 767

[Close]

BLAST of MC03g0796 vs. TAIR 10
Match: AT2G46980.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. )

HSP 1 Score: 45.1 bits (105), Expect = 8.6e-05
Identity = 42/152 (27.63%), Postives = 68/152 (44.74%), Query Frame = 0


Query: 34  DIDLDLDLSDDLKGIVSALNQIREKAQKDDQKKNEETISSVSSEIRTMIEEVKSKFEKDR 93
           D D D  L   +     AL     K +   +KK+ E I+SVS EI   +E +KS    + 
Sbjct: 619 DEDEDEGLGRAVALFAMALQNFERKLKSAAEKKSSEIIASVSEEIHLELENIKSHIITEA 678

Query: 94  QSFAKALSKSSKECENCLKDETAKFQALHEKFTKERATHLQAIKDTISKFEEEKERLFAK 153
              +       K  E  L+++  K + +HEKF  + + HL+  K TI + E  +  L   
Sbjct: 679 GKTSNLAKTKRKHAETRLQEQEEKMRMIHEKFKDDVSHHLEDFKSTIEELEANQSELKGS 738

Query: 154 YEQLRKRERNLISEQEKACADKIAQLEESLKR 186
            ++ R   + LI+  E     K   L+++ KR
Sbjct: 739 IKKQRTSHQKLIAHFEGGIETK---LDDATKR 767

The following BLAST results are available for this feature:

BLAST of MC03g0796 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g0796 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140180.1	9.92e-137	100.00	DNA ligase 1 [Momordica charantia] >XP_022140181.1 DNA ligase 1 [Momordica chara...	[more]
XP_023001751.1	7.99e-127	92.59	DNA ligase 1 [Cucurbita maxima]	[more]
XP_022927498.1	5.38e-125	92.13	DNA ligase 1 [Cucurbita moschata] >KAG6583999.1 hypothetical protein SDJN03_1993...	[more]
XP_023520366.1	1.27e-123	91.20	DNA ligase 1 [Cucurbita pepo subsp. pepo]	[more]
XP_004146600.1	7.31e-123	90.28	DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X...	[more]

BLAST of MC03g0796 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CEE2	4.80e-137	100.00	DNA ligase 1 OS=Momordica charantia OX=3673 GN=LOC111010912 PE=4 SV=1	[more]
A0A6J1KJH3	3.87e-127	92.59	DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1	[more]
A0A6J1EL64	2.61e-125	92.13	DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1	[more]
A0A0A0LRW7	3.54e-123	90.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1	[more]
A0A5D3DS94	1.68e-121	89.81	DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MC03g0796 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33793.1	1.3e-61	67.03	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT2G46980.2	8.6e-05	27.63	unknown protein; Has 3995 Blast hits to 3325 proteins in 374 species: Archae - 1...	[more]
AT2G46980.3	8.6e-05	27.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..167
None	No IPR available	COILS	Coil	Coil	coord: 169..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..36
None	No IPR available	PANTHER	PTHR35295	DNA LIGASE-LIKE PROTEIN	coord: 9..216
None	No IPR available	PANTHER	PTHR35295:SF1	DNA LIGASE-LIKE PROTEIN	coord: 9..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0796.1	MC03g0796.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0099086	synaptonemal structure
molecular_function	GO:0016874	ligase activity