MC02g_new0322 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g_new0322
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptiondisease resistance protein RGA2-like
LocationMC02: 13734021 .. 13735529 (+)
RNA-Seq ExpressionMC02g_new0322
SyntenyMC02g_new0322
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATAGAATGAATAACATTTCGGACTTGTTATGCAAACATTATCACGAGGCAGGTTCTTTGGGACTTGTTGCCAGCGAATCTGCAGAAACAGAGATTGATATTAGCCAACTTCGAGAGACAGTCTCCGAGTTGGATGATTTTGATGTTGTGGGTAGGGATGTTGAAGTTTCAAGCATAGTGAATCAAGTGATGGATGCTACAAATAGACATGTTACATCCATCTTACCCATTGTTGGTATGGGTGGATTGGGAAAAACGACATTGGCGAAGTTGGTCTTCCACCATGAGAGGATAAGAAAACATTTTGATAAGACTCATCATTTAAGTAAACTCTCTGACGATGAGTGTTGGTCATTATTTAAAAAAAAGTGCAAATTCAAATGGACTACCAATGACTTCAAGTTTGAAAGTTTTTTTCAACAACGGTTGGTTAAAAAAATTGGTGGCATACCATTAGTTGCAAGAGTTTTGGGGAGAGCAGTAAAATTTCAAGGAAACTATGATAGATGGGTGACGATATTGGAAAGTGAAATAAGTACTCTATTTCAAGAGGAAAGTTTTACTTTATCGGCCATATTGAAATTAAGTGTGGATCGCTTAACATCATTTTCTTTAAAGCAATGTTTTGTCTATTGTTCAAATTTCCCTAAAGATTTTGTGTTTAACAAAGAACAACTAATTCAAATGTGGATGACACAGGGATTTATTCATTTACAAGAAGGAAGAAGCAATAAAACAATGGAAGATGAAGGAGATAGGTACTAAAACATTTTGTTGTCTCATTGCTTATTTCAAGATGTTGTTAAAGATGGCAGAGGGAGAATTATAAAGTGTAAGAGATGCATGATCTTATACATGATATTGCATGTGATGTTTCAAATGATACTAAATTGCAACTAGATTATTCTAGTAATTTAATGTATAGCGAACTTTGGACGAAGGAGAATAAAAAAATTGCAAACAAGTTACGCACCATAATTTATTACAAAGAGACGATACCTCACATAATAGAGAAGGTGATTCATGATAAGATGATGAAGTTTGTTTGTTTGCATGTTTTGACGATGAATTCAATATCTATTGAAGAATTACCAAACTTAATTGATAAATTGAAGCACTTGAGATATCTCGACATATCAGGCTGTTCAATAAATGAGCTCCCAGAATTTATTTTATAACTTGCAAACACCACTGATGAGAGACATAATTGTACATTTTTCGAAGAATTTTAGAGAATTGGTTAATTTGAGACATTTGGAATTTTTTTCCTCTATACATATGCCTCCACATTTGAGCCAATTGATTCAACTTCAAACATTATCATATTTTATAGTAGGTTTTGAGAAGGGTTGTAAAATTACAGAGCTTGGACCTTTGAAAAACTTGAAGGGTAGTTTGGAACTTGTCGATCTAGAACGAGTTGAAAGTAAAGAGGAAGCCAAGACTGCAAAATTGGTAGAAAAAGAGAAGTTACATCAGCTATCCCTGTGTTGGTTTGCTTGA

mRNA sequence

ATGGCAAATAGAATGAATAACATTTCGGACTTGTTATGCAAACATTATCACGAGGCAGGTTCTTTGGGACTTGTTGCCAGCGAATCTGCAGAAACAGAGATTGATATTAGCCAACTTCGAGAGACAGTCTCCGAGTTGGATGATTTTGATGTTGTGGGTAGGGATGTTGAAGTTTCAAGCATAGTGAATCAAGTGATGGATGCTACAAATAGACATGTTACATCCATCTTACCCATTGTTGGTTTTGAGAAGGGTTGTAAAATTACAGAGCTTGGACCTTTGAAAAACTTGAAGGGTAGTTTGGAACTTGTCGATCTAGAACGAGTTGAAAGTAAAGAGGAAGCCAAGACTGCAAAATTGGTAGAAAAAGAGAAGTTACATCAGCTATCCCTGTGTTGGTTTGCTTGA

Coding sequence (CDS)

ATGGCAAATAGAATGAATAACATTTCGGACTTGTTATGCAAACATTATCACGAGGCAGGTTCTTTGGGACTTGTTGCCAGCGAATCTGCAGAAACAGAGATTGATATTAGCCAACTTCGAGAGACAGTCTCCGAGTTGGATGATTTTGATGTTGTGGGTAGGGATGTTGAAGTTTCAAGCATAGTGAATCAAGTGATGGATGCTACAAATAGACATGTTACATCCATCTTACCCATTGTTGGTTTTGAGAAGGGTTGTAAAATTACAGAGCTTGGACCTTTGAAAAACTTGAAGGGTAGTTTGGAACTTGTCGATCTAGAACGAGTTGAAAGTAAAGAGGAAGCCAAGACTGCAAAATTGGTAGAAAAAGAGAAGTTACATCAGCTATCCCTGTGTTGGTTTGCTTGA

Protein sequence

MANRMNNISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSSIVNQVMDATNRHVTSILPIVGFEKGCKITELGPLKNLKGSLELVDLERVESKEEAKTAKLVEKEKLHQLSLCWFA
Homology
[Close]
BLAST of MC02g_new0322 vs. ExPASy Swiss-Prot
Match: Q7XBQ9 (Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 79  IVGFEKGCKITELGPLKNLKGSLELVDLERVESKEEAKTAKLVEKEKLHQLSLCW 134
           +VG +KG ++ ELG L NL GS+++  LERV++ ++AK A L  K  LH LS+ W
Sbjct: 629 VVGRKKGYQLGELGNL-NLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSW 682

[Close]
BLAST of MC02g_new0322 vs. ExPASy Swiss-Prot
Match: Q7XA40 (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 7.5e-04
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 0 

Query: 79  IVGFEKGCKITELGPLKNLKGSLELVDLERVESKEEAKTAKLVEKEKLHQLSLCW 134
           +VG  KG ++ EL  L NL+G++ +  LERV++  EAK A L  K  LH LS+ W
Sbjct: 637 VVGERKGYQLGELRNL-NLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSW 690

[Close]
BLAST of MC02g_new0322 vs. NCBI nr
Match: XP_022150842.1 (putative disease resistance protein RGA3 [Momordica charantia])

HSP 1 Score: 154 bits (389), Expect = 1.01e-40
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MANRMNNISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSS 60
           MANRM NISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSS
Sbjct: 117 MANRMKNISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSS 176

Query: 61  IVNQVMDATNRHVTSILPIVG 81
           IVNQVMDATNRHVTSILPIVG
Sbjct: 177 IVNQVMDATNRHVTSILPIVG 197

[Close]
BLAST of MC02g_new0322 vs. NCBI nr
Match: XP_022158717.1 (putative disease resistance protein RGA3 [Momordica charantia])

HSP 1 Score: 125 bits (315), Expect = 2.11e-30
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 1   MANRMNNISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSS 60
           MA +M NI+DLLCKHY EAG LGLV   SAE EIDI+QLRET+SELDDF+VVGRDVEVS 
Sbjct: 117 MARKMKNITDLLCKHYCEAGPLGLVGDGSAEIEIDIAQLRETISELDDFEVVGRDVEVSK 176

Query: 61  IVNQVMDATNRHVTSILPIVG 81
           IVNQ++DATN HVTSILPIVG
Sbjct: 177 IVNQLIDATNTHVTSILPIVG 197

[Close]
BLAST of MC02g_new0322 vs. NCBI nr
Match: XP_038901403.1 (putative disease resistance protein RGA3 isoform X3 [Benincasa hispida])

HSP 1 Score: 110 bits (274), Expect = 4.53e-25
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 0 

Query: 1  MANRMNNISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSS 60
          MA RM +I DLL KHY EAG LGLV++ES E E +ISQLRET+SELDDF++VGR+ EVSS
Sbjct: 1  MAKRMKSIKDLLRKHYCEAGPLGLVSNESTELETEISQLRETISELDDFEIVGRNDEVSS 60

Query: 61 IVNQVMDATNRHVTSILPIVG 81
          IV QV+DA  +H TSILPIVG
Sbjct: 61 IVKQVIDAKKKHTTSILPIVG 81

[Close]
BLAST of MC02g_new0322 vs. NCBI nr
Match: XP_038901402.1 (putative disease resistance protein RGA3 isoform X2 [Benincasa hispida])

HSP 1 Score: 110 bits (274), Expect = 6.44e-25
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 0 

Query: 1  MANRMNNISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSS 60
          MA RM +I DLL KHY EAG LGLV++ES E E +ISQLRET+SELDDF++VGR+ EVSS
Sbjct: 1  MAKRMKSIKDLLRKHYCEAGPLGLVSNESTELETEISQLRETISELDDFEIVGRNDEVSS 60

Query: 61 IVNQVMDATNRHVTSILPIVG 81
          IV QV+DA  +H TSILPIVG
Sbjct: 61 IVKQVIDAKKKHTTSILPIVG 81

[Close]
BLAST of MC02g_new0322 vs. NCBI nr
Match: XP_038901401.1 (disease resistance protein RGA2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 110 bits (274), Expect = 6.57e-25
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 0 

Query: 1  MANRMNNISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSS 60
          MA RM +I DLL KHY EAG LGLV++ES E E +ISQLRET+SELDDF++VGR+ EVSS
Sbjct: 1  MAKRMKSIKDLLRKHYCEAGPLGLVSNESTELETEISQLRETISELDDFEIVGRNDEVSS 60

Query: 61 IVNQVMDATNRHVTSILPIVG 81
          IV QV+DA  +H TSILPIVG
Sbjct: 61 IVKQVIDAKKKHTTSILPIVG 81

[Close]
BLAST of MC02g_new0322 vs. ExPASy TrEMBL
Match: A0A6J1DBV6 (putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC111018890 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 4.90e-41
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MANRMNNISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSS 60
           MANRM NISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSS
Sbjct: 117 MANRMKNISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSS 176

Query: 61  IVNQVMDATNRHVTSILPIVG 81
           IVNQVMDATNRHVTSILPIVG
Sbjct: 177 IVNQVMDATNRHVTSILPIVG 197

[Close]
BLAST of MC02g_new0322 vs. ExPASy TrEMBL
Match: A0A6J1DXY1 (putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC111025175 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 1.02e-30
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 1   MANRMNNISDLLCKHYHEAGSLGLVASESAETEIDISQLRETVSELDDFDVVGRDVEVSS 60
           MA +M NI+DLLCKHY EAG LGLV   SAE EIDI+QLRET+SELDDF+VVGRDVEVS 
Sbjct: 117 MARKMKNITDLLCKHYCEAGPLGLVGDGSAEIEIDIAQLRETISELDDFEVVGRDVEVSK 176

Query: 61  IVNQVMDATNRHVTSILPIVG 81
           IVNQ++DATN HVTSILPIVG
Sbjct: 177 IVNQLIDATNTHVTSILPIVG 197

[Close]
BLAST of MC02g_new0322 vs. ExPASy TrEMBL
Match: A0A5D3BQC0 (Disease resistance protein RGA2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001590 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.03e-21
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 0 

Query: 1  MANRMNNISDLLCKHYHEAGSLGLVASESAETEID-ISQLRETVSELDDFDVVGRDVEVS 60
          MA +M  + +LL KHY+EA  LGLV +E+A  EID ISQ RET+SEL+D  +VGRDVEV 
Sbjct: 1  MAKKMMTLVELLEKHYNEAAPLGLVVNENARPEIDVISQYRETISELEDHKIVGRDVEVE 60

Query: 61 SIVNQVMDATNRHVTSILPIVG 81
          SIV QV+DA+N  +TSILPIVG
Sbjct: 61 SIVKQVIDASNNQLTSILPIVG 82

[Close]
BLAST of MC02g_new0322 vs. ExPASy TrEMBL
Match: A0A5A7TG70 (Disease resistance protein RGA2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001980 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.89e-21
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 1   MANRMNNISDLLCKHYHEAGSLGLVASESAETEID-ISQLRETVSELDDFDVVGRDVEVS 60
           MAN+M  + +LL KHY+EA  LGLV +E+A  EID ISQ RET+SEL+D  +VGRDVEV 
Sbjct: 117 MANKMMTLVELLEKHYNEAAPLGLVVNENARPEIDVISQYRETISELEDHKIVGRDVEVE 176

Query: 61  SIVNQVMDATNRHVTSILPIVG 81
           SIV QV+DA+N  +TSILPIVG
Sbjct: 177 SIVKQVIDASNNQLTSILPIVG 198

[Close]
BLAST of MC02g_new0322 vs. ExPASy TrEMBL
Match: A0A1S3CHQ5 (disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501070 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.16e-21
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 1   MANRMNNISDLLCKHYHEAGSLGLVASESAETEID-ISQLRETVSELDDFDVVGRDVEVS 60
           MAN+M  + +LL KHY+EA  LGLV +E+A  EID ISQ RET+SEL+D  +VGRDVEV 
Sbjct: 117 MANKMMTLVELLEKHYNEAAPLGLVVNENARPEIDVISQYRETISELEDHKIVGRDVEVE 176

Query: 61  SIVNQVMDATNRHVTSILPIVG 81
           SIV QV+DA+N  +TSILPIVG
Sbjct: 177 SIVKQVIDASNNQLTSILPIVG 198

The following BLAST results are available for this feature:
BLAST of MC02g_new0322 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q7XBQ91.5e-0447.27Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 ... [more]
Q7XA407.5e-0445.45Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=R... [more]
BLAST of MC02g_new0322 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150842.11.01e-4098.77putative disease resistance protein RGA3 [Momordica charantia][more]
XP_022158717.12.11e-3079.01putative disease resistance protein RGA3 [Momordica charantia][more]
XP_038901403.14.53e-2570.37putative disease resistance protein RGA3 isoform X3 [Benincasa hispida][more]
XP_038901402.16.44e-2570.37putative disease resistance protein RGA3 isoform X2 [Benincasa hispida][more]
XP_038901401.16.57e-2570.37disease resistance protein RGA2-like isoform X1 [Benincasa hispida][more]
BLAST of MC02g_new0322 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DBV64.90e-4198.77putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1DXY11.02e-3079.01putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A5D3BQC01.03e-2163.41Disease resistance protein RGA2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TG704.89e-2164.63Disease resistance protein RGA2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3CHQ55.16e-2164.63disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501070 PE=... [more]
BLAST of MC02g_new0322 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g_new0322.1MC02g_new0322.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
molecular_function GO:0043531 ADP binding