MC02g_new0155 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g_new0155
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC02: 7020454 .. 7021332 (+)
RNA-Seq Expression	MC02g_new0155
Synteny	MC02g_new0155

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGTGCGGACCTTGTTTCCAGTACCACTAACAAATCAAAAGTTTCAGTTCATTATAACTCTTTTTTGTTTAGTTCTTGGGGATTTGCTGACAGCTGAAACTCTACTCATTTGTCTAATTTCAGTTGGCTAAATCTTGCAGTTTTATAAGGATGGTTTCACTTAGCTAAATCTTGCAGTTTTACTGGTTCATTACTGAACATATGAAGATTTGTCCCCCACATTGCAAGAAAAAAGTGGAAACACAAGTTTTTGTCGATGAAAATTTTAACTCAGTTGCAATTGCAACTCATATTTGTCACTTTACATGTAAAAAGTTTCCTTTACAGTGATAATCAATTGTGTATCGTATCGACAGAAATGAAAAGAGAAGTTGTCAAAACTGTGAAGAGGGATTTCCTCTTTGTTCTCCATCTTTCATGAGATATGCAGTCGCCAAATTTTGTTCAGTTCCATCCAAGCGTAGCTCAACGAGTCAAGCATCGTCTACTAATCTAGAAGTGACATCAATGAAGGCTTCTTCTTTGCAGGGAATGGTCAAACCTCCTGCTGGATGGTTGAATCCAAATTCTTCTTCAGCTCTACTGAGCAACTTTACAAATGAAGGGTGATTCAAGTAGGAAATTGGAACCAAAAACCGCTTTCTCTGGTTTTCTCCCACGTACACCGCAATATGGCCTTTGGGAATATTGGACTGACATCTTGATGAAACGAACTGCATCTTTAGAATTTGCTTGGCAGTGAGGAGAACGGAAGGCAGACGAATTCCCATGTCGAAATGGAATCGAATTGAGAACAAAGAAGAGCTTTGATTGACTGAGCTCTTGATATGGATCTGGAAATGGTAAATTGAAACTACTTGAATGAGAATATGTGACAG

mRNA sequence

ATGAGATATGCAGTCGCCAAATTTTGTTCAGTTCCATCCAAGCGTAGCTCAACGAGTCAAGCATCGTCTACTAATCTAGAAGTGACATCAATGAAGGCTTCTTCTTTGCAGGGAATGGTCAAACCTCCTGCTGGATGGTTGAATCCAAATTCTTCTTCAGCTCTACTGAGCAACTTTACAAATGAAGGGTGA

Coding sequence (CDS)

ATGAGATATGCAGTCGCCAAATTTTGTTCAGTTCCATCCAAGCGTAGCTCAACGAGTCAAGCATCGTCTACTAATCTAGAAGTGACATCAATGAAGGCTTCTTCTTTGCAGGGAATGGTCAAACCTCCTGCTGGATGGTTGAATCCAAATTCTTCTTCAGCTCTACTGAGCAACTTTACAAATGAAGGGTGA

Protein sequence

MRYAVAKFCSVPSKRSSTSQASSTNLEVTSMKASSLQGMVKPPAGWLNPNSSSALLSNFTNEG

Homology

[Close]

BLAST of MC02g_new0155 vs. NCBI nr
Match: KAG6571061.1 (hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 6.91e-11
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 25 NLEVTSMKASSLQGMVKPPAGWLNPNSSSALLSNFTNEG 63
          NLEVTSMKASSLQ MV PP GWLNPNSSSALLS   NEG
Sbjct: 36 NLEVTSMKASSLQEMVNPPVGWLNPNSSSALLSKSKNEG 74

[Close]

BLAST of MC02g_new0155 vs. NCBI nr
Match: KAG6605012.1 (hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 52.0 bits (123), Expect = 6.02e-06
Identity = 27/38 (71.05%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 26 LEVTSMKASSLQGMVKPPAGWLNPNSSSALLSNFTNEG 63
          LEV   KASSL G+VKPP GW NPNSSS LLS  T EG
Sbjct: 33 LEVRFRKASSLHGIVKPPIGWQNPNSSSDLLSKSTKEG 70

[Close]

BLAST of MC02g_new0155 vs. NCBI nr
Match: KAG7010876.1 (hypothetical protein SDJN02_27674, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 48.5 bits (114), Expect = 6.11e-05
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 37  QGMVKPPAGWLNPNSSSALLSNFTNEG 63
           QG+VKPP GWLNPNSSSAL S  TNEG
Sbjct: 113 QGIVKPPVGWLNPNSSSALSSKSTNEG 139

The following BLAST results are available for this feature:

BLAST of MC02g_new0155 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g_new0155 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571061.1	6.91e-11	84.62	hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605012.1	6.02e-06	71.05	hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7010876.1	6.11e-05	81.48	hypothetical protein SDJN02_27674, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MC02g_new0155 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MC02g_new0155 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g_new0155.1	MC02g_new0155.1	mRNA