MC02g_new0116 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g_new0116
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSuperoxide dismutase
LocationMC02: 5456557 .. 5457159 (+)
RNA-Seq ExpressionMC02g_new0116
SyntenyMC02g_new0116
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATTCTGCTTCAGGCAGGTTCCGGGAGCCAGTAATTAGTGGCGAGATCATGCGATTGCATCACCGAAAACATCATCAAGCGTATGTCTCGATCTTCAACAAGGCTCTCGACCAGCTCGATCGAGACATCAAGTTCGATGGCGGAGGTACTGCAATTTCTTTCGAATATCTCATTATTGTCAGAGTTATAAGGTTAGGGTGAATTTTATAAGTTCATATTGACATTACGAGACCTATCATTTGTGCATTTGAACCTTCTTTTTCTCAATTAGTGATATAGAATCGGATTAATGTAACGTAAGTAAGTAATAGCGATTGAGGAACTTGGGAACAGCTATCGCCGATTGTTAGTCCTTGATGGTGTGAATTTTCTTCTAGCTTTTTAATTCTGTTTATCGTTCCAAAGGTCATATCAACCATTCGATTTTCTGGAAGAATCTCGTTCCAGTCCGCGTAAGACTGATGCTTTCCTGTTATCAAATTTACTTGAATCTCGTTTCCCTAATTCGTAACCATTTCTGAGTTTTTGTAGGATCGTGGTGGGGAGCCTCCTAGTCCTGTTCAGGTTTCTTTATGTCCGACTAAGCGTAGATTCTGA

mRNA sequence

ATGGAGGATTCTGCTTCAGGCAGGTTCCGGGAGCCAGTAATTAGTGGCGAGATCATGCGATTGCATCACCGAAAACATCATCAAGCGTATGTCTCGATCTTCAACAAGGCTCTCGACCAGCTCGATCGAGACATCAAGTTCGATGGCGGAGGTCATATCAACCATTCGATTTTCTGGAAGAATCTCGTTCCAGTCCGCGATCGTGGTGGGGAGCCTCCTAGTCCTGTTCAGGTTTCTTTATGTCCGACTAAGCGTAGATTCTGA

Coding sequence (CDS)

ATGGAGGATTCTGCTTCAGGCAGGTTCCGGGAGCCAGTAATTAGTGGCGAGATCATGCGATTGCATCACCGAAAACATCATCAAGCGTATGTCTCGATCTTCAACAAGGCTCTCGACCAGCTCGATCGAGACATCAAGTTCGATGGCGGAGGTCATATCAACCATTCGATTTTCTGGAAGAATCTCGTTCCAGTCCGCGATCGTGGTGGGGAGCCTCCTAGTCCTGTTCAGGTTTCTTTATGTCCGACTAAGCGTAGATTCTGA

Protein sequence

MEDSASGRFREPVISGEIMRLHHRKHHQAYVSIFNKALDQLDRDIKFDGGGHINHSIFWKNLVPVRDRGGEPPSPVQVSLCPTKRRF
Homology
BLAST of MC02g_new0116 vs. ExPASy Swiss-Prot
Match: P27084 (Superoxide dismutase [Mn], mitochondrial OS=Pisum sativum OX=3888 GN=SODA PE=2 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-20
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQ---------------LDRDIKFDGGGHINH 70
           EPVISGEIM++HH+KHHQ Y++ +NKAL+Q               L   IKF+GGGHINH
Sbjct: 53  EPVISGEIMQIHHQKHHQTYITNYNKALEQLHDAVAKADTSTTVKLQNAIKFNGGGHINH 112

Query: 71  SIFWKNLVPVRDRGGEPP 74
           SIFWKNL PV + GGEPP
Sbjct: 113 SIFWKNLAPVSEGGGEPP 130

BLAST of MC02g_new0116 vs. ExPASy Swiss-Prot
Match: P41980 (Superoxide dismutase [Mn] 3.4, mitochondrial OS=Zea mays OX=4577 GN=SODA.3 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-20
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDR---------------DIKFDGGGHINH 70
           EP ISGEIMRLHH+KHH  YV  +NKAL+QLD                 IKF+GGGH+NH
Sbjct: 46  EPAISGEIMRLHHQKHHATYVGNYNKALEQLDAAVAKGDASAVVQLQGAIKFNGGGHVNH 105

Query: 71  SIFWKNLVPVRDRGGEPP 74
           SIFWKNL P+ + GGEPP
Sbjct: 106 SIFWKNLKPISEGGGEPP 123

BLAST of MC02g_new0116 vs. ExPASy Swiss-Prot
Match: O81235 (Superoxide dismutase [Mn] 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MSD1 PE=1 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 4.8e-20
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDR---------------DIKFDGGGHINH 70
           EP ISGEIM++HH+KHHQAYV+ +N AL+QLD+                IKF+GGGH+NH
Sbjct: 44  EPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGGHVNH 103

Query: 71  SIFWKNLVPVRDRGGEPP 74
           SIFWKNL P  + GGEPP
Sbjct: 104 SIFWKNLAPSSEGGGEPP 121

BLAST of MC02g_new0116 vs. ExPASy Swiss-Prot
Match: P11796 (Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia OX=4092 GN=SODA PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.3e-20
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQ---------------LDRDIKFDGGGHINH 70
           EP ISG+IM+LHH+ HHQ YV+ +NKAL+Q               L   IKF+GGGHINH
Sbjct: 41  EPAISGDIMQLHHQNHHQTYVTNYNKALEQLHDAISKGDAPTVAKLHSAIKFNGGGHINH 100

Query: 71  SIFWKNLVPVRDRGGEPP 74
           SIFWKNL PVR+ GGEPP
Sbjct: 101 SIFWKNLAPVREGGGEPP 118

BLAST of MC02g_new0116 vs. ExPASy Swiss-Prot
Match: Q9SM64 (Superoxide dismutase [Mn], mitochondrial OS=Prunus persica OX=3760 GN=SOD PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.3e-20
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQ---------------LDRDIKFDGGGHINH 70
           EP ISG+IM+LHH+ HHQ YV+ +NKAL+Q               L   IKF+GGGHINH
Sbjct: 41  EPAISGDIMQLHHQNHHQTYVTNYNKALEQLHDAISKGDAPTVAKLHSAIKFNGGGHINH 100

Query: 71  SIFWKNLVPVRDRGGEPP 74
           SIFWKNL PVR+ GGEPP
Sbjct: 101 SIFWKNLAPVREGGGEPP 118

BLAST of MC02g_new0116 vs. NCBI nr
Match: AEK82129.1 (mitochondrial manganese superoxide dismutase [Datisca glomerata])

HSP 1 Score: 107 bits (266), Expect = 2.11e-26
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDRD---------------IKFDGGGHINH 70
           EPVISGEIMRLHH+KHHQ YV+ +NKAL+QLD+                IKF+GGGHINH
Sbjct: 43  EPVISGEIMRLHHQKHHQTYVTNYNKALEQLDQALTKGDSSTIVKLQSAIKFNGGGHINH 102

Query: 71  SIFWKNLVPVRDRGGEPP 73
           SIFWKNL PVR+ GGEPP
Sbjct: 103 SIFWKNLTPVREEGGEPP 120

BLAST of MC02g_new0116 vs. NCBI nr
Match: KAB1217601.1 (Superoxide dismutase [Mn], mitochondrial [Morella rubra])

HSP 1 Score: 106 bits (264), Expect = 3.74e-26
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDRD---------------IKFDGGGHINH 70
           EPVISGEIM+LHH+KHHQAY++ FNKAL+QLD                 IKF+GGGHINH
Sbjct: 38  EPVISGEIMQLHHQKHHQAYITNFNKALEQLDEAMAKGDSTAVVKLQSAIKFNGGGHINH 97

Query: 71  SIFWKNLVPVRDRGGEPP 73
           SIFWKNL P+R+ GGEPP
Sbjct: 98  SIFWKNLAPIREGGGEPP 115

BLAST of MC02g_new0116 vs. NCBI nr
Match: XP_021909695.1 (superoxide dismutase [Mn], mitochondrial-like [Carica papaya])

HSP 1 Score: 105 bits (263), Expect = 5.93e-26
Identity = 50/78 (64.10%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDRD---------------IKFDGGGHINH 70
           EPVISGEIM+LHH+KHHQAY++ +NKAL+QLD+                IKF+GGGHINH
Sbjct: 43  EPVISGEIMQLHHQKHHQAYITNYNKALEQLDQATQKGDSSTIVKLQSAIKFNGGGHINH 102

Query: 71  SIFWKNLVPVRDRGGEPP 73
           SIFWKNL PVR+ GGEPP
Sbjct: 103 SIFWKNLAPVREGGGEPP 120

BLAST of MC02g_new0116 vs. NCBI nr
Match: MQK22380.1 (superoxide dismutase [Escherichia coli])

HSP 1 Score: 102 bits (253), Expect = 8.19e-26
Identity = 48/78 (61.54%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 11 EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDRD---------------IKFDGGGHINH 70
          EP ISGEIM+LHH+KHHQ YV+ +NKA++QLD                 IKF+GGGHINH
Sbjct: 11 EPAISGEIMQLHHQKHHQTYVTNYNKAIEQLDHALAKGDSPTVVTLQGAIKFNGGGHINH 70

Query: 71 SIFWKNLVPVRDRGGEPP 73
          SIFWKNL PVR+ GGEPP
Sbjct: 71 SIFWKNLTPVREGGGEPP 88

BLAST of MC02g_new0116 vs. NCBI nr
Match: AHX36944.1 (Mn superoxide dismutase, partial [Betula platyphylla])

HSP 1 Score: 101 bits (252), Expect = 1.50e-25
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLD---------------RDIKFDGGGHINH 70
           EPVISGEIM+LHH+KHHQAY++ +NKAL+QL                  IKF+GGGHINH
Sbjct: 38  EPVISGEIMQLHHQKHHQAYITNYNKALEQLQDAVGKGDSPAVVKLQSAIKFNGGGHINH 97

Query: 71  SIFWKNLVPVRDRGGEPP 73
           SIFWKNL PVR+ GG+PP
Sbjct: 98  SIFWKNLTPVREGGGDPP 115

BLAST of MC02g_new0116 vs. ExPASy TrEMBL
Match: H6SWQ3 (Superoxide dismutase OS=Datisca glomerata OX=34297 PE=2 SV=1)

HSP 1 Score: 107 bits (266), Expect = 1.02e-26
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDRD---------------IKFDGGGHINH 70
           EPVISGEIMRLHH+KHHQ YV+ +NKAL+QLD+                IKF+GGGHINH
Sbjct: 43  EPVISGEIMRLHHQKHHQTYVTNYNKALEQLDQALTKGDSSTIVKLQSAIKFNGGGHINH 102

Query: 71  SIFWKNLVPVRDRGGEPP 73
           SIFWKNL PVR+ GGEPP
Sbjct: 103 SIFWKNLTPVREEGGEPP 120

BLAST of MC02g_new0116 vs. ExPASy TrEMBL
Match: A0A6A1VXD4 (Superoxide dismutase OS=Morella rubra OX=262757 GN=CJ030_MR3G002748 PE=3 SV=1)

HSP 1 Score: 106 bits (264), Expect = 1.81e-26
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDRD---------------IKFDGGGHINH 70
           EPVISGEIM+LHH+KHHQAY++ FNKAL+QLD                 IKF+GGGHINH
Sbjct: 38  EPVISGEIMQLHHQKHHQAYITNFNKALEQLDEAMAKGDSTAVVKLQSAIKFNGGGHINH 97

Query: 71  SIFWKNLVPVRDRGGEPP 73
           SIFWKNL P+R+ GGEPP
Sbjct: 98  SIFWKNLAPIREGGGEPP 115

BLAST of MC02g_new0116 vs. ExPASy TrEMBL
Match: A0A2N9FQ23 (Superoxide dismutase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20708 PE=3 SV=1)

HSP 1 Score: 105 bits (262), Expect = 4.14e-26
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDRD---------------IKFDGGGHINH 70
           EPVISGEIM+LHH+KHHQ Y++ +NKALDQLD+                IKF+GGGH+NH
Sbjct: 44  EPVISGEIMQLHHQKHHQTYITNYNKALDQLDQALAKSDSSSIVQLQSAIKFNGGGHVNH 103

Query: 71  SIFWKNLVPVRDRGGEPPS 74
           SIFWKNL P+R+ GGEPP+
Sbjct: 104 SIFWKNLTPIREGGGEPPT 122

BLAST of MC02g_new0116 vs. ExPASy TrEMBL
Match: A0A023PSJ2 (Mn superoxide dismutase (Fragment) OS=Betula platyphylla OX=78630 PE=2 SV=1)

HSP 1 Score: 101 bits (252), Expect = 7.27e-26
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLD---------------RDIKFDGGGHINH 70
           EPVISGEIM+LHH+KHHQAY++ +NKAL+QL                  IKF+GGGHINH
Sbjct: 38  EPVISGEIMQLHHQKHHQAYITNYNKALEQLQDAVGKGDSPAVVKLQSAIKFNGGGHINH 97

Query: 71  SIFWKNLVPVRDRGGEPP 73
           SIFWKNL PVR+ GG+PP
Sbjct: 98  SIFWKNLTPVREGGGDPP 115

BLAST of MC02g_new0116 vs. ExPASy TrEMBL
Match: A0A200R3G7 (Superoxide dismutase OS=Macleaya cordata OX=56857 GN=BVC80_1837g65 PE=3 SV=1)

HSP 1 Score: 105 bits (261), Expect = 7.46e-26
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDR---------------DIKFDGGGHINH 70
           EPVISGEIMRLHH+KHHQ Y++ FNK+L+QLD                 IKF+GGGH+NH
Sbjct: 55  EPVISGEIMRLHHQKHHQTYITNFNKSLEQLDEAMEKGDSSTVVKLQSSIKFNGGGHVNH 114

Query: 71  SIFWKNLVPVRDRGGEPP 73
           SIFWKNL+PV + GGEPP
Sbjct: 115 SIFWKNLIPVNEGGGEPP 132

BLAST of MC02g_new0116 vs. TAIR 10
Match: AT3G10920.1 (manganese superoxide dismutase 1 )

HSP 1 Score: 98.2 bits (243), Expect = 3.4e-21
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDR---------------DIKFDGGGHINH 70
           EP ISGEIM++HH+KHHQAYV+ +N AL+QLD+                IKF+GGGH+NH
Sbjct: 44  EPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGGHVNH 103

Query: 71  SIFWKNLVPVRDRGGEPP 74
           SIFWKNL P  + GGEPP
Sbjct: 104 SIFWKNLAPSSEGGGEPP 121

BLAST of MC02g_new0116 vs. TAIR 10
Match: AT3G10920.2 (manganese superoxide dismutase 1 )

HSP 1 Score: 98.2 bits (243), Expect = 3.4e-21
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQLDR---------------DIKFDGGGHINH 70
           EP ISGEIM++HH+KHHQAYV+ +N AL+QLD+                IKF+GGGH+NH
Sbjct: 44  EPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGGHVNH 103

Query: 71  SIFWKNLVPVRDRGGEPP 74
           SIFWKNL P  + GGEPP
Sbjct: 104 SIFWKNLAPSSEGGGEPP 121

BLAST of MC02g_new0116 vs. TAIR 10
Match: AT3G56350.1 (Iron/manganese superoxide dismutase family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-19
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 11  EPVISGEIMRLHHRKHHQAYVSIFNKALDQL-----DRD----------IKFDGGGHINH 70
           EP IS EIMRLHH+KHHQ YV+ +NKAL+ L     D D          IKF+GGGH+NH
Sbjct: 49  EPAISEEIMRLHHQKHHQTYVTQYNKALNSLRSAMADGDHSSVVKLQSLIKFNGGGHVNH 108

Query: 71  SIFWKNLVPVRDRGGEPP 74
           +IFWKNL PV + GG+PP
Sbjct: 109 AIFWKNLAPVHEGGGKPP 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P270841.7e-2058.97Superoxide dismutase [Mn], mitochondrial OS=Pisum sativum OX=3888 GN=SODA PE=2 S... [more]
P419803.7e-2058.97Superoxide dismutase [Mn] 3.4, mitochondrial OS=Zea mays OX=4577 GN=SODA.3 PE=2 ... [more]
O812354.8e-2057.69Superoxide dismutase [Mn] 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MS... [more]
P117966.3e-2058.97Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia OX=4092 GN... [more]
Q9SM646.3e-2058.97Superoxide dismutase [Mn], mitochondrial OS=Prunus persica OX=3760 GN=SOD PE=2 S... [more]
Match NameE-valueIdentityDescription
AEK82129.12.11e-2665.38mitochondrial manganese superoxide dismutase [Datisca glomerata][more]
KAB1217601.13.74e-2664.10Superoxide dismutase [Mn], mitochondrial [Morella rubra][more]
XP_021909695.15.93e-2664.10superoxide dismutase [Mn], mitochondrial-like [Carica papaya][more]
MQK22380.18.19e-2661.54superoxide dismutase [Escherichia coli][more]
AHX36944.11.50e-2561.54Mn superoxide dismutase, partial [Betula platyphylla][more]
Match NameE-valueIdentityDescription
H6SWQ31.02e-2665.38Superoxide dismutase OS=Datisca glomerata OX=34297 PE=2 SV=1[more]
A0A6A1VXD41.81e-2664.10Superoxide dismutase OS=Morella rubra OX=262757 GN=CJ030_MR3G002748 PE=3 SV=1[more]
A0A2N9FQ234.14e-2660.76Superoxide dismutase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20708 PE=3 SV=1[more]
A0A023PSJ27.27e-2661.54Mn superoxide dismutase (Fragment) OS=Betula platyphylla OX=78630 PE=2 SV=1[more]
A0A200R3G77.46e-2661.54Superoxide dismutase OS=Macleaya cordata OX=56857 GN=BVC80_1837g65 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G10920.13.4e-2157.69manganese superoxide dismutase 1 [more]
AT3G10920.23.4e-2157.69manganese superoxide dismutase 1 [more]
AT3G56350.11.1e-1957.69Iron/manganese superoxide dismutase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036324Manganese/iron superoxide dismutase, N-terminal domain superfamilyGENE3D1.10.287.990Fe,Mn superoxide dismutase (SOD) domaincoord: 15..40
e-value: 5.1E-9
score: 38.6
IPR036324Manganese/iron superoxide dismutase, N-terminal domain superfamilyGENE3D1.10.287.990Fe,Mn superoxide dismutase (SOD) domaincoord: 41..62
e-value: 8.7E-7
score: 31.5
IPR036324Manganese/iron superoxide dismutase, N-terminal domain superfamilySUPERFAMILY46609Fe,Mn superoxide dismutase (SOD), N-terminal domaincoord: 11..64
IPR019831Manganese/iron superoxide dismutase, N-terminalPFAMPF00081Sod_Fe_Ncoord: 42..62
e-value: 8.0E-5
score: 23.0
coord: 11..44
e-value: 2.4E-10
score: 40.7
NoneNo IPR availablePANTHERPTHR11404SUPEROXIDE DISMUTASE 2coord: 45..74
NoneNo IPR availablePANTHERPTHR11404:SF38SUPEROXIDE DISMUTASEcoord: 45..74
NoneNo IPR availablePANTHERPTHR11404SUPEROXIDE DISMUTASE 2coord: 11..43
NoneNo IPR availablePANTHERPTHR11404:SF38SUPEROXIDE DISMUTASEcoord: 11..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g_new0116.1MC02g_new0116.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity