Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGCTGCTTTTCAGTTAACTCGGCCACCCTTAATTTGTCCACCAAGCACAGTAGAATTAACCCAGCTATTATCAAGTGCATTTGGAAGTCTAAAAATCCCAAGAAAGTAAAAGATTTCCTCAGGATTATGTTTCAAGGCAAGTCGAATACTAGTGACAAGTTCCAAAGAAGAATGCCGAATTGTCATCTCTCCCCTAGCTGGTGCATCTTACGCAAGATGGACTCCACAAGCCACTGCCAATCCTTTTCCATTGTCCTGTTGTTACTGCTTGTTGGGCTAAGCTTTTCAATGTCTTTGGGAATTGGGGTAAGCTGGTGTTTTCCTCTTTCATACGATACCTCAGTTTTTCAACTACTCCAAGGCCCTAATCTCAAAGGTGGTTCTAGTATTTTGTGGGACAACACTATGAATGCTACTTTTTGGTGCTCGTGGGAGAATGGGGTTGATTTGAGCACAAAAATTGTGGGACCTTATCAAATTCCACACATCTTCTTGGTGCCTTCTCTTAAAGAGTTTTCTAATGATGAACCTTTGCATATTCTTTCCAATTGAGAAGCCTTTTTGTAACCCTTTGACTCTTTGGGGATATTTCATCCCAATGTTCTATTGATCTAATACATTTTCTGTTATAAATAAAAAAAGGGTTGTTTCAATTACTTTTGTTTGGAGGATTTGGTATGAGAGGAATCAAAGAATCGTCAAAGGGAAAGAAAACTCCATAGTCCATTCCTGGGAAGTTGTTCGTACTTTTGTCTCTTCTTGGTGCCTCATTGATAAATTGTTTTGTAATTATAATTTCATGAGTCTAAACGCCAACTGGAAACCTTTTTTG
mRNA sequence
AATGGCTGCTTTTCAGTTAACTCGGCCACCCTTAATTTGTCCACCAAGCACAGTAGAATTAACCCAGCTATTATCAAGTGCATTTGGAAGTCTAAAAATCCCAAGAAAGTAAAAGATTTCCTCAGGATTATGTTTCAAGGCAAGTCGAATACTAGTGACAAGTTCCAAAGAAGAATGCCGAATTGTCATCTCTCCCCTAGCTGGTGCATCTTACGCAAGATGGACTCCACAAGCCACTGCCAATCCTTTTCCATTGTCCTGTTGTTACTGCTTGTTGGGCTAAGCTTTTCAATGTCTTTGGGAATTGGGGTAAGCTGGTGTTTTCCTCTTTCATACGATACCTCAGTTTTTCAACTACTCCAAGGCCCTAATCTCAAAGGTGGTTCTAGTATTTTGTGGGACAACACTATGAATGCTACTTTTTGGTGCTCGATTTGGTATGAGAGGAATCAAAGAATCGTCAAAGGGAAAGAAAACTCCATAGTCCATTCCTGGGAAGTTGTTCGTACTTTTGTCTCTTCTTGGTGCCTCATTGATAAATTGTTTTGTAATTATAATTTCATGAGTCTAAACGCCAACTGGAAACCTTTTTTG
Coding sequence (CDS)
AATGGCTGCTTTTCAGTTAACTCGGCCACCCTTAATTTGTCCACCAAGCACAGTAGAATTAACCCAGCTATTATCAAGTGCATTTGGAAGTCTAAAAATCCCAAGAAAGTAAAAGATTTCCTCAGGATTATGTTTCAAGGCAAGTCGAATACTAGTGACAAGTTCCAAAGAAGAATGCCGAATTGTCATCTCTCCCCTAGCTGGTGCATCTTACGCAAGATGGACTCCACAAGCCACTGCCAATCCTTTTCCATTGTCCTGTTGTTACTGCTTGTTGGGCTAAGCTTTTCAATGTCTTTGGGAATTGGGGTAAGCTGGTGTTTTCCTCTTTCATACGATACCTCAGTTTTTCAACTACTCCAAGGCCCTAATCTCAAAGGTGGTTCTAGTATTTTGTGGGACAACACTATGAATGCTACTTTTTGGTGCTCGATTTGGTATGAGAGGAATCAAAGAATCGTCAAAGGGAAAGAAAACTCCATAGTCCATTCCTGGGAAGTTGTTCGTACTTTTGTCTCTTCTTGGTGCCTCATTGATAAATTGTTTTGTAATTATAATTTCATGAGTCTAAACGCCAACTGGAAACCTTTTTTG
Protein sequence
NGCFSVNSATLNLSTKHSRINPAIIKCIWKSKNPKKVKDFLRIMFQGKSNTSDKFQRRMPNCHLSPSWCILRKMDSTSHCQSFSIVLLLLLVGLSFSMSLGIGVSWCFPLSYDTSVFQLLQGPNLKGGSSILWDNTMNATFWCSIWYERNQRIVKGKENSIVHSWEVVRTFVSSWCLIDKLFCNYNFMSLNANWKPFL
Homology
BLAST of MC02g1223 vs. NCBI nr
Match:
XP_030479135.1 (uncharacterized protein LOC115696374 [Cannabis sativa])
HSP 1 Score: 93.6 bits (231), Expect = 9.79e-19
Identity = 60/203 (29.56%), Postives = 94/203 (46.31%), Query Frame = 0
Query: 2 GCFSVNSATLNLSTKHSRINPAIIKCIWKSKNPKKVKDFLRIMFQGKSNTSDKFQRRMPN 61
G FS SA ++ + P K +WKS +VK F+ ++ GK N D QRR P
Sbjct: 160 GVFSSKSAFAWFNSNQNVARPPWTKSLWKSIALSRVKIFIWLVAHGKVNVHDVLQRRRPF 219
Query: 62 CHLSPSWCILRKMDSTS------HCQSFSIVLLLLLVGLSFSMSLGIGVSWCFPLSYDTS 121
+SP WC+ K + HC+ S + +LL G+ W P S
Sbjct: 220 ILISPGWCVCCKSNGEEVEHLFLHCKFSSKLWSMLLE--------EFGLIWALPRSVPQM 279
Query: 122 VFQLLQGPNLKGGSSILWDNTMNATFWCSIWYERNQRIVKGKENSIVHSWEVVRTFVSSW 181
+ ++G + ILW + AT W +IW ERN RI + ENS + W+ ++ + ++W
Sbjct: 280 LMSKIKGSKRQ---DILWKTAVLATIW-AIWLERNTRIFEDVENSAIVVWDKIKFWTATW 339
Query: 182 CLIDKLFCNYNFMSLNANWKPFL 198
K F + +F+ L+ W+ L
Sbjct: 340 VFRTKHFEDLSFLDLSREWRVLL 350
BLAST of MC02g1223 vs. NCBI nr
Match:
XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])
HSP 1 Score: 89.7 bits (221), Expect = 2.45e-18
Identity = 56/173 (32.37%), Postives = 83/173 (47.98%), Query Frame = 0
Query: 28 IWKSKNPKKVKDFLRIMFQGKSNTSDKFQRRMPNCHLSPSWCILRKMDSTSHCQSF-SIV 87
+WK+K+P++V F I+FQGK NT+D Q++ P+ L PS+C L H F
Sbjct: 32 LWKTKSPRRVNVFCWILFQGKLNTADIIQKKSPSDALLPSFCCLCTKSGEDHDHLFFHCY 91
Query: 88 LLLLLVGLSFSMSLGIGVSWCFPLSYDTSVFQLLQGP-NLKGGSSILWDNTMNATFWCSI 147
L F V WCF L +V+QLL GP +L LW N + A +
Sbjct: 92 FASKCWNLLFHQ---FNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKALL-SEL 151
Query: 148 WYERNQRIVKGKENSIVHSWEVVRTFVSSWCLIDKLFCNYNFMSLNANWKPFL 198
W+ERN R+ + K S+ + S WC + F +++ + ANW F+
Sbjct: 152 WFERNSRLFEEKRRLFDESFYSAKFKASLWCSLVDSFLHHSPSMIYANWGAFI 200
BLAST of MC02g1223 vs. NCBI nr
Match:
XP_030483308.1 (uncharacterized protein LOC115699905 [Cannabis sativa])
HSP 1 Score: 85.1 bits (209), Expect = 5.36e-16
Identity = 64/201 (31.84%), Postives = 85/201 (42.29%), Query Frame = 0
Query: 2 GCFSVNSATLNLSTKHSRINPAI-IKCIWKSKNPKKVKDFLRIMFQGKSNTSDKFQRRMP 61
G FS S T N T K +WKS P KVK F ++ GK N Q+R P
Sbjct: 86 GIFSCKS-TFNWFTSDQNFGDLFWTKTLWKSTCPIKVKVFGWLVALGKINVHPMMQKRRP 145
Query: 62 NCHLSPSWCILRKMDSTSHCQSFSIVLLLLLVGLSFSMSLGIG------VSWCFPLSYDT 121
LSP WC+ K S F +G + L I + W P S
Sbjct: 146 FICLSPGWCVCCKKSSEEVAHLF--------LGCCLAQRLWIKLLNAFEIQWVLPGSVPL 205
Query: 122 SVFQLLQGPNLKGGSSILWDNTMNATFWCSIWYERNQRIVKGKENSIVHSWEVVRTFVSS 181
+ + G + G S LW + A W IW ERN RI +G E S+ WE VR + +
Sbjct: 206 MMVSKVGG---RKGRSYLWRTAVLAIIWV-IWLERNNRIFEGIEASVEDLWEKVRFWTAV 265
Query: 182 WCLIDKLFCNYNFMSLNANWK 195
W K F ++F+ LN +W+
Sbjct: 266 WVYKTKSFEQFSFLDLNRDWR 273
BLAST of MC02g1223 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 85.9 bits (211), Expect = 1.63e-15
Identity = 58/200 (29.00%), Postives = 91/200 (45.50%), Query Frame = 0
Query: 5 SVNSATLNLSTKHSRINPAIIKCIWKSKNPKKVKDFLRIMFQGKSNTSDKFQRRMPNCHL 64
SV A + +P + K +WK + PKK K F+ + G NT+D+ Q+R+PN L
Sbjct: 956 SVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 1015
Query: 65 SPSWCIL--RKMDSTSHCQSFSIVLLLLLVGLSFSMSLGIG----VSWCFPLSYDTSVFQ 124
SP+WC + + + +H L + +S L ++W + S+ Q
Sbjct: 1016 SPNWCYMCNKSQEDINH----------LFIHCPYSQQLWSKAKALLNWNSTPTDVQSLIQ 1075
Query: 125 LLQGPNLKGGSSILWDNTMNATFWCSIWYERNQRIVKGKENSIVHSWEVVRTFVSSWCLI 184
+ N++ ++ NT NAT IW ERN RI K +E + WE + W
Sbjct: 1076 NICSLNIRNQKGLITFNT-NATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCK 1135
Query: 185 DKLFCNYNFMSLNANWKPFL 198
KLF NY+ S+ N F+
Sbjct: 1136 SKLFSNYDCCSIALNISAFV 1144
BLAST of MC02g1223 vs. NCBI nr
Match:
XP_030505044.1 (uncharacterized protein LOC115720016 [Cannabis sativa])
HSP 1 Score: 84.0 bits (206), Expect = 1.78e-15
Identity = 59/203 (29.06%), Postives = 88/203 (43.35%), Query Frame = 0
Query: 2 GCFSVNSATLNLSTKHSRINPAIIKCIWKSKNPKKVKDFLRIMFQGKSNTSDKFQRRMPN 61
G FS SA ++ + P K +WKS +VK F+ ++ GK N D QRR P
Sbjct: 105 GVFSSKSAFAWFNSNQNGARPPWTKSLWKSTAMSRVKIFIWLVAHGKVNVHDVLQRRRPF 164
Query: 62 CHLSPSWCILRKMDSTS------HCQSFSIVLLLLLVGLSFSMSLGIGVSWCFPLSYDTS 121
+SP WC+ K HC+ S + +LL G+ W P S
Sbjct: 165 ILISPGWCVSCKSSGEEVEHLFLHCKFSSKLWSMLLE--------EFGLIWALPRSVPQM 224
Query: 122 VFQLLQGPNLKGGSSILWDNTMNATFWCSIWYERNQRIVKGKENSIVHSWEVVRTFVSSW 181
+ ++G + ILW + AT W +IW ERN RI + ENS+ + +W
Sbjct: 225 LVSKIKGSKRQ---DILWKTAVLATIW-AIWLERNTRIFEDVENSLQSGAGQNKITTRTW 284
Query: 182 CLIDKLFCNYNFMSLNANWKPFL 198
K F + +F+ L+ W+ L
Sbjct: 285 VFRTKHFEDLSFLDLSREWRVLL 295
BLAST of MC02g1223 vs. ExPASy TrEMBL
Match:
A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)
HSP 1 Score: 89.7 bits (221), Expect = 1.19e-18
Identity = 56/173 (32.37%), Postives = 83/173 (47.98%), Query Frame = 0
Query: 28 IWKSKNPKKVKDFLRIMFQGKSNTSDKFQRRMPNCHLSPSWCILRKMDSTSHCQSF-SIV 87
+WK+K+P++V F I+FQGK NT+D Q++ P+ L PS+C L H F
Sbjct: 32 LWKTKSPRRVNVFCWILFQGKLNTADIIQKKSPSDALLPSFCCLCTKSGEDHDHLFFHCY 91
Query: 88 LLLLLVGLSFSMSLGIGVSWCFPLSYDTSVFQLLQGP-NLKGGSSILWDNTMNATFWCSI 147
L F V WCF L +V+QLL GP +L LW N + A +
Sbjct: 92 FASKCWNLLFHQ---FNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKALL-SEL 151
Query: 148 WYERNQRIVKGKENSIVHSWEVVRTFVSSWCLIDKLFCNYNFMSLNANWKPFL 198
W+ERN R+ + K S+ + S WC + F +++ + ANW F+
Sbjct: 152 WFERNSRLFEEKRRLFDESFYSAKFKASLWCSLVDSFLHHSPSMIYANWGAFI 200
BLAST of MC02g1223 vs. ExPASy TrEMBL
Match:
A0A803QGT5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 93.6 bits (231), Expect = 1.76e-18
Identity = 60/203 (29.56%), Postives = 94/203 (46.31%), Query Frame = 0
Query: 2 GCFSVNSATLNLSTKHSRINPAIIKCIWKSKNPKKVKDFLRIMFQGKSNTSDKFQRRMPN 61
G FS SA ++ + P K +WKS +VK F+ ++ GK N D QRR P
Sbjct: 1311 GVFSSKSAFAWFNSNQNVARPPWTKSLWKSIALSRVKIFIWLVAHGKVNVHDVLQRRRPF 1370
Query: 62 CHLSPSWCILRKMDSTS------HCQSFSIVLLLLLVGLSFSMSLGIGVSWCFPLSYDTS 121
+SP WC+ K + HC+ S + +LL G+ W P S
Sbjct: 1371 ILISPGWCVCCKSNGEEVEHLFLHCKFSSKLWSMLLE--------EFGLIWALPRSVPQM 1430
Query: 122 VFQLLQGPNLKGGSSILWDNTMNATFWCSIWYERNQRIVKGKENSIVHSWEVVRTFVSSW 181
+ ++G + ILW + AT W +IW ERN RI + ENS + W+ ++ + ++W
Sbjct: 1431 LMSKIKGSKRQ---DILWKTAVLATIW-AIWLERNTRIFEDVENSAIVVWDKIKFWTATW 1490
Query: 182 CLIDKLFCNYNFMSLNANWKPFL 198
K F + +F+ L+ W+ L
Sbjct: 1491 VFRTKHFEDLSFLDLSREWRVLL 1501
BLAST of MC02g1223 vs. ExPASy TrEMBL
Match:
A0A803QEA6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 86.7 bits (213), Expect = 4.43e-16
Identity = 51/173 (29.48%), Postives = 82/173 (47.40%), Query Frame = 0
Query: 26 KCIWKSKNPKKVKDFLRIMFQGKSNTSDKFQRRMPNCHLSPSWCILRKMDSTSHCQSFSI 85
K +WKS+ P KVK F ++ K N + Q++ P +SP WC+ K+ + F
Sbjct: 1403 KILWKSRGPSKVKVFGWLVALDKLNVHARLQKKRPFMSISPGWCVCCKISGEDNAHLF-- 1462
Query: 86 VLLLLLVGLSFSMSLGIGVSWCFPLSYDTSVFQLLQGPNLKGGSSILWDNTMNATFWCSI 145
+ L L + + W P S D + + G S+ LW T+ + W +
Sbjct: 1463 LRCRLASSLWIMLMNEFQIQWAMPSSVDYMLVSKVGGSKR---STSLWRTTVLSVLWV-V 1522
Query: 146 WYERNQRIVKGKENSIVHSWEVVRTFVSSWCLIDKLFCNYNFMSLNANWKPFL 198
W ERN RI +G E+SI W+ ++ + +SW K F N +F+ L +W+ L
Sbjct: 1523 WLERNNRIFEGSESSIETLWDKIKFWTASWVYKTKHFENISFLDLIRDWRTLL 1569
BLAST of MC02g1223 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 7.91e-16
Identity = 58/200 (29.00%), Postives = 91/200 (45.50%), Query Frame = 0
Query: 5 SVNSATLNLSTKHSRINPAIIKCIWKSKNPKKVKDFLRIMFQGKSNTSDKFQRRMPNCHL 64
SV A + +P + K +WK + PKK K F+ + G NT+D+ Q+R+PN L
Sbjct: 956 SVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 1015
Query: 65 SPSWCIL--RKMDSTSHCQSFSIVLLLLLVGLSFSMSLGIG----VSWCFPLSYDTSVFQ 124
SP+WC + + + +H L + +S L ++W + S+ Q
Sbjct: 1016 SPNWCYMCNKSQEDINH----------LFIHCPYSQQLWSKAKALLNWNSTPTDVQSLIQ 1075
Query: 125 LLQGPNLKGGSSILWDNTMNATFWCSIWYERNQRIVKGKENSIVHSWEVVRTFVSSWCLI 184
+ N++ ++ NT NAT IW ERN RI K +E + WE + W
Sbjct: 1076 NICSLNIRNQKGLITFNT-NATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCK 1135
Query: 185 DKLFCNYNFMSLNANWKPFL 198
KLF NY+ S+ N F+
Sbjct: 1136 SKLFSNYDCCSIALNISAFV 1144
BLAST of MC02g1223 vs. ExPASy TrEMBL
Match:
A0A803PZR8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 8.62e-16
Identity = 59/203 (29.06%), Postives = 88/203 (43.35%), Query Frame = 0
Query: 2 GCFSVNSATLNLSTKHSRINPAIIKCIWKSKNPKKVKDFLRIMFQGKSNTSDKFQRRMPN 61
G FS SA ++ + P K +WKS +VK F+ ++ GK N D QRR P
Sbjct: 105 GVFSSKSAFAWFNSNQNGARPPWTKSLWKSTAMSRVKIFIWLVAHGKVNVHDVLQRRRPF 164
Query: 62 CHLSPSWCILRKMDSTS------HCQSFSIVLLLLLVGLSFSMSLGIGVSWCFPLSYDTS 121
+SP WC+ K HC+ S + +LL G+ W P S
Sbjct: 165 ILISPGWCVSCKSSGEEVEHLFLHCKFSSKLWSMLLE--------EFGLIWALPRSVPQM 224
Query: 122 VFQLLQGPNLKGGSSILWDNTMNATFWCSIWYERNQRIVKGKENSIVHSWEVVRTFVSSW 181
+ ++G + ILW + AT W +IW ERN RI + ENS+ + +W
Sbjct: 225 LVSKIKGSKRQ---DILWKTAVLATIW-AIWLERNTRIFEDVENSLQSGAGQNKITTRTW 284
Query: 182 CLIDKLFCNYNFMSLNANWKPFL 198
K F + +F+ L+ W+ L
Sbjct: 285 VFRTKHFEDLSFLDLSREWRVLL 295
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_030479135.1 | 9.79e-19 | 29.56 | uncharacterized protein LOC115696374 [Cannabis sativa] | [more] |
XP_022153214.1 | 2.45e-18 | 32.37 | uncharacterized protein LOC111020765 [Momordica charantia] | [more] |
XP_030483308.1 | 5.36e-16 | 31.84 | uncharacterized protein LOC115699905 [Cannabis sativa] | [more] |
KAA0039950.1 | 1.63e-15 | 29.00 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
XP_030505044.1 | 1.78e-15 | 29.06 | uncharacterized protein LOC115720016 [Cannabis sativa] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1DIE2 | 1.19e-18 | 32.37 | uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
A0A803QGT5 | 1.76e-18 | 29.56 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803QEA6 | 4.43e-16 | 29.48 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A5A7T9I7 | 7.91e-16 | 29.00 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A803PZR8 | 8.62e-16 | 29.06 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |