MC02g1208 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g1208
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionMediator of RNA polymerase II transcription subunit 8 isoform X1
LocationMC02: 10775919 .. 10776089 (+)
RNA-Seq ExpressionMC02g1208
SyntenyMC02g1208
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTTTGAAAGAAACAAGAAGATCTTTTACAATAAATGTGCTCCTTGGGGTGAAAGCTTTGAGATGATCAAAGTTCATATAGCTTCTTGGTGTATTCCGAACAAACTTTTTCAAAATAATTCCATCACTGAGATTAACTCTAATTGGGAAGTTTTTTGTAAGATTGTACTG

mRNA sequence

TGGTTTGAAAGAAACAAGAAGATCTTTTACAATAAATGTGCTCCTTGGGGTGAAAGCTTTGAGATGATCAAAGTTCATATAGCTTCTTGGTGTATTCCGAACAAACTTTTTCAAAATAATTCCATCACTGAGATTAACTCTAATTGGGAAGTTTTTTGTAAGATTGTACTG

Coding sequence (CDS)

TGGTTTGAAAGAAACAAGAAGATCTTTTACAATAAATGTGCTCCTTGGGGTGAAAGCTTTGAGATGATCAAAGTTCATATAGCTTCTTGGTGTATTCCGAACAAACTTTTTCAAAATAATTCCATCACTGAGATTAACTCTAATTGGGAAGTTTTTTGTAAGATTGTACTG

Protein sequence

WFERNKKIFYNKCAPWGESFEMIKVHIASWCIPNKLFQNNSITEINSNWEVFCKIVL
Homology
[Close]
BLAST of MC02g1208 vs. NCBI nr
Match: XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 9.25e-07
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0 

Query: 1   WFERNKKIFYNKCAPWGESFEMIKVHIASWCIPNKLFQNNSITEINSNWEVF 52
           WFERN++IFYNK     +  E  +   +SWC+ +  F+  S+++ N NWE F
Sbjct: 262 WFERNQRIFYNKATSCQDRLEAARRQASSWCLLSDPFRAYSLSDFNLNWEAF 313

[Close]
BLAST of MC02g1208 vs. NCBI nr
Match: KAA0068194.1 (mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 2.49e-06
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 1   WFERNKKIFYNKCAPWGESFEMIKVHIASWCIPNKLFQNNSITEINSN 48
           WFERN++IF NK +PW    E+ +++ +SWC  +K F+  SI +I+ N
Sbjct: 446 WFERNQRIFQNKASPWTTHAEIARINASSWCSLSKSFEAFSIQDISLN 493

[Close]
BLAST of MC02g1208 vs. NCBI nr
Match: TYK28784.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 8.77e-06
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0 

Query: 1   WFERNKKIFYNKCAPWGESFEMIKVHIASWCIPNKLFQNNSITEINSNWEVF 52
           WFE N++IF  K   W E  ++ K + A+WC+ NK F + SI +++ NW  F
Sbjct: 599 WFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVNWLAF 650

[Close]
BLAST of MC02g1208 vs. NCBI nr
Match: KAA0062564.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 8.78e-06
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0 

Query: 1   WFERNKKIFYNKCAPWGESFEMIKVHIASWCIPNKLFQNNSITEINSNWEVF 52
           WFE N++IF  K   W E  ++ K + A+WC+ NK F + SI +++ NW  F
Sbjct: 646 WFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVNWLAF 697

[Close]
BLAST of MC02g1208 vs. ExPASy TrEMBL
Match: A0A5A7VLA2 (Mediator of RNA polymerase II transcription subunit 8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001760 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.21e-06
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 1   WFERNKKIFYNKCAPWGESFEMIKVHIASWCIPNKLFQNNSITEINSN 48
           WFERN++IF NK +PW    E+ +++ +SWC  +K F+  SI +I+ N
Sbjct: 446 WFERNQRIFQNKASPWTTHAEIARINASSWCSLSKSFEAFSIQDISLN 493

[Close]
BLAST of MC02g1208 vs. ExPASy TrEMBL
Match: A0A5D3DZ52 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001490 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.25e-06
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0 

Query: 1   WFERNKKIFYNKCAPWGESFEMIKVHIASWCIPNKLFQNNSITEINSNWEVF 52
           WFE N++IF  K   W E  ++ K + A+WC+ NK F + SI +++ NW  F
Sbjct: 599 WFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVNWLAF 650

[Close]
BLAST of MC02g1208 vs. ExPASy TrEMBL
Match: A0A5A7V5N8 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00520 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.25e-06
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0 

Query: 1   WFERNKKIFYNKCAPWGESFEMIKVHIASWCIPNKLFQNNSITEINSNWEVF 52
           WFE N++IF  K   W E  ++ K + A+WC+ NK F + SI +++ NW  F
Sbjct: 646 WFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLSVNWLAF 697

The following BLAST results are available for this feature:
BLAST of MC02g1208 vs.
Match NameE-valueIdentityDescription
BLAST of MC02g1208 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903695.19.25e-0740.38uncharacterized protein LOC120090219 [Benincasa hispida][more]
KAA0068194.12.49e-0643.75mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis melo v... [more]
TYK28784.18.77e-0640.38GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa][more]
KAA0062564.18.78e-0640.38GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa][more]
BLAST of MC02g1208 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VLA21.21e-0643.75Mediator of RNA polymerase II transcription subunit 8 isoform X1 OS=Cucumis melo... [more]
A0A5D3DZ524.25e-0640.38GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A5A7V5N84.25e-0640.38GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
BLAST of MC02g1208 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g1208.1MC02g1208.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0016787 hydrolase activity