MC02g1158 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g1158
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionProtein JINGUBANG-like isoform X3
LocationMC02: 10080778 .. 10081224 (-)
RNA-Seq ExpressionMC02g1158
SyntenyMC02g1158
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGCCGGTCAGCACCGACAAGCACGCGTGCTCCGACGCCGTCCTCTGCCACACGCAGATCCCCATATCGGCGGAGCCGCTCAGCAACAGGCGGCCGGCGGTGGCCAAACAGAGAATCGCAAGTTTATGGCCTCGCAGAGATCCGCTGTGCGACAGAGACTTCTCCCGCTCCCAGAAATTGACGAGTCCGTCGGAGGAGCCGCAGTACACAAACGACGCCTCCTCGTTGACGGCGAGAGCGGTGATGGCGCATTCCTGCTTCACCAGCGTCTGCGAGAAGAAATGTTTGGTTCCTTTACCTTGAAGCTCCCGCCGCCACACCTTGACGCTGCCGTCGGCGGATCCGGTGAACACCAATCCGTCGATACTGGAGACGAGAGTGTTGACGGCGTCGTCGTGAGCCTGAATCGATTCCAAACATTTCGAATCGGAAACTCTCCAGACCTT

mRNA sequence

GTGGCCGGTCAGCACCGACAAGCACGCGTGCTCCGACGCCGTCCTCTGCCACACGCAGATCCCCATATCGGCGGAGCCGCTCAGCAACAGGCGGCCGGCGGTGGCCAAACAGAGAATCGCAAGTTTATGGCCTCGCAGAGATCCGCTGTGCGACAGAGACTTCTCCCGCTCCCAGAAATTGACGAGTCCGTCGGAGGAGCCGCAGTACACAAACGACGCCTCCTCGTTGACGGCGAGAGCGGTGATGGCGCATTCCTGCTTCACCAGCGTCTGCGAGAAGAAATGTTTGGTTCCTTTACCTTGAAGCTCCCGCCGCCACACCTTGACGCTGCCGTCGGCGGATCCGGTGAACACCAATCCGTCGATACTGGAGACGAGAGTGTTGACGGCGTCGTCGTGAGCCTGAATCGATTCCAAACATTTCGAATCGGAAACTCTCCAGACCTT

Coding sequence (CDS)

GTGGCCGGTCAGCACCGACAAGCACGCGTGCTCCGACGCCGTCCTCTGCCACACGCAGATCCCCATATCGGCGGAGCCGCTCAGCAACAGGCGGCCGGCGGTGGCCAAACAGAGAATCGCAAGTTTATGGCCTCGCAGAGATCCGCTGTGCGACAGAGACTTCTCCCGCTCCCAGAAATTGACGAGTCCGTCGGAGGAGCCGCAGTACACAAACGACGCCTCCTCGTTGACGGCGAGAGCGGTGATGGCGCATTCCTGCTTCACCAGCGTCTGCGAGAAGAAATGTTTGGTTCCTTTACCTTGAAGCTCCCGCCGCCACACCTTGACGCTGCCGTCGGCGGATCCGGTGAACACCAATCCGTCGATACTGGAGACGAGAGTGTTGACGGCGTCGTCGTGAGCCTGAATCGATTCCAAACATTTCGAATCGGAAACTCTCCAGACCTT

Protein sequence

VAGQHRQARVLRRRPLPHADPHIGGAAQQQAAGGGQTENRKFMASQRSAVRQRLLPLPEIDESVGGAAVHKRRLLVDGESGDGAFLLHQRLREEMFGSFTLKLPPPHLDAAVGGSGEHQSVDTGDESVDGVVVSLNRFQTFRIGNSPDL
Homology
BLAST of MC02g1158 vs. NCBI nr
Match: QEX51262.1 (protein JINGUBANG-like isoform X3, partial [Cymbidium ensifolium])

HSP 1 Score: 75.1 bits (183), Expect = 2.74e-14
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 41  KFMASQRSAVRQRL---LPLPEIDESVGGAAVHKRRLLVDGESGDGAFLLHQRLREEMFG 100
           +FM  Q  A+ + L   LPLPEIDE +GG AV  R    D + GD   L  Q L+  +  
Sbjct: 1   EFMTMQCPAMNELLPLPLPLPEIDEPIGGGAVQDRSRGADNKRGDSTVLFQQHLKCFVLC 60

Query: 101 SFTLKLPPPHLDAAVGGSGEHQSVDT-GDESVDGVVVSLNRFQTFRIG 144
           S  L+ P PHL  A+G +GE +  +  GD  VDGV+V     +  R+G
Sbjct: 61  SLALQFPQPHLHGAIGRAGEDEGTEARGDHRVDGVIVCNEGLEALRVG 108

BLAST of MC02g1158 vs. NCBI nr
Match: QEX51263.1 (protein JINGUBANG-like isoform X4, partial [Cymbidium ensifolium])

HSP 1 Score: 62.0 bits (149), Expect = 2.08e-08
Identity = 45/137 (32.85%), Postives = 67/137 (48.91%), Query Frame = 0

Query: 15  PLPHADPHIGGAAQQQAAGGGQTENRKFMASQRSAVRQRLLPLPEIDESVGGAAVHKRRL 74
           P PHA   IG + + Q    GQT++R+FMA Q S   Q +LP PE    +   AV + R 
Sbjct: 67  PTPHAYRFIGRSRKHQIPRQGQTQHREFMAVQYSPTHQ-ILP-PETHPPIRRPAVQQTRT 126

Query: 75  LVDGESGDGAFLLHQRLREEMFG---SFTLKLPPPHLDAAVGGSGEHQSVDTGDESVDGV 134
               +S       HQ L             +L PPHL+  VG +GE++ V+     ++ V
Sbjct: 127 QTHTQSRHRRLQPHQHLHLHNPPPGLGLAPRLNPPHLNRPVGRTGENEPVEPNYNRINRV 186

Query: 135 VVSLNRFQTFRIGNSPD 148
           +V ++R +   IGN P+
Sbjct: 187 LVGVDRVEASGIGNPPE 201

BLAST of MC02g1158 vs. NCBI nr
Match: KAF7828779.1 (uncharacterized protein G2W53_019943 [Senna tora])

HSP 1 Score: 62.4 bits (150), Expect = 2.17e-08
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 0

Query: 95  MFGSFTLKLPPPHLDAAVGGSGEHQSVDTGDESVDGVVVSLNRFQTFRIGNSPDL 149
           M GSF L LPPPHL  AV G+G  QSV +  + V+GVVVS   FQ F +G SPDL
Sbjct: 1   MLGSFPLYLPPPHLHGAVCGAGVDQSVKSHHQGVNGVVVSGYGFQAFEVGGSPDL 55

BLAST of MC02g1158 vs. ExPASy TrEMBL
Match: A0A5J6NB00 (Protein JINGUBANG-like isoform X3 (Fragment) OS=Cymbidium ensifolium OX=78740 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.33e-14
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 41  KFMASQRSAVRQRL---LPLPEIDESVGGAAVHKRRLLVDGESGDGAFLLHQRLREEMFG 100
           +FM  Q  A+ + L   LPLPEIDE +GG AV  R    D + GD   L  Q L+  +  
Sbjct: 1   EFMTMQCPAMNELLPLPLPLPEIDEPIGGGAVQDRSRGADNKRGDSTVLFQQHLKCFVLC 60

Query: 101 SFTLKLPPPHLDAAVGGSGEHQSVDT-GDESVDGVVVSLNRFQTFRIG 144
           S  L+ P PHL  A+G +GE +  +  GD  VDGV+V     +  R+G
Sbjct: 61  SLALQFPQPHLHGAIGRAGEDEGTEARGDHRVDGVIVCNEGLEALRVG 108

BLAST of MC02g1158 vs. ExPASy TrEMBL
Match: A0A0D3CNY2 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.32e-11
Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 0

Query: 1   VAGQHRQARVLRRRPLPHADPHIGGAAQQQAAGGGQTENRKFMASQRSAVRQRLL--PLP 60
           +  Q+R  RV      PHA   I    + Q +   + E+ K M  + + + Q  L   LP
Sbjct: 46  MTSQNRHTRVNSPFSPPHAYLLIRRTTKHQFSSCREAEHSKPMLLENTTMLQHFLLSHLP 105

Query: 61  EIDESVGGAAVHKRRLLVDGESGDGAFLLHQRLREEMFGSFTLKLPPPHLDAAVGGSGEH 120
            I  +V    +H+   +   +S +  FL  Q L + M  +    LP P+L+ ++G + E 
Sbjct: 106 IIHSTVARTTIHRH--VASNQSRNSRFLFQQSLNQTMRSTLPANLPFPNLNRSLGRASED 165

Query: 121 QSV--DTGDESVDGVVVSLNRFQTFRIGNSPDL 149
           +++   +G + VDGV++S NRFQTF+I N+P+L
Sbjct: 166 KTLAGTSGYDGVDGVIMSFNRFQTFQIVNAPNL 196

BLAST of MC02g1158 vs. ExPASy TrEMBL
Match: A0A5J6N997 (Protein JINGUBANG-like isoform X4 (Fragment) OS=Cymbidium ensifolium OX=78740 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.01e-08
Identity = 45/137 (32.85%), Postives = 67/137 (48.91%), Query Frame = 0

Query: 15  PLPHADPHIGGAAQQQAAGGGQTENRKFMASQRSAVRQRLLPLPEIDESVGGAAVHKRRL 74
           P PHA   IG + + Q    GQT++R+FMA Q S   Q +LP PE    +   AV + R 
Sbjct: 67  PTPHAYRFIGRSRKHQIPRQGQTQHREFMAVQYSPTHQ-ILP-PETHPPIRRPAVQQTRT 126

Query: 75  LVDGESGDGAFLLHQRLREEMFG---SFTLKLPPPHLDAAVGGSGEHQSVDTGDESVDGV 134
               +S       HQ L             +L PPHL+  VG +GE++ V+     ++ V
Sbjct: 127 QTHTQSRHRRLQPHQHLHLHNPPPGLGLAPRLNPPHLNRPVGRTGENEPVEPNYNRINRV 186

Query: 135 VVSLNRFQTFRIGNSPD 148
           +V ++R +   IGN P+
Sbjct: 187 LVGVDRVEASGIGNPPE 201

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
QEX51262.12.74e-1439.81protein JINGUBANG-like isoform X3, partial [Cymbidium ensifolium][more]
QEX51263.12.08e-0832.85protein JINGUBANG-like isoform X4, partial [Cymbidium ensifolium][more]
KAF7828779.12.17e-0858.18uncharacterized protein G2W53_019943 [Senna tora][more]
Match NameE-valueIdentityDescription
A0A5J6NB001.33e-1439.81Protein JINGUBANG-like isoform X3 (Fragment) OS=Cymbidium ensifolium OX=78740 PE... [more]
A0A0D3CNY26.32e-1130.72Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1[more]
A0A5J6N9971.01e-0832.85Protein JINGUBANG-like isoform X4 (Fragment) OS=Cymbidium ensifolium OX=78740 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g1158.1MC02g1158.1mRNA