MC02g1047 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g1047
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC02: 8569055 .. 8569187 (-)
RNA-Seq ExpressionMC02g1047
SyntenyMC02g1047
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGCATCTGACTCCTTCATGCAGGCCTACTTGACTCGGGGGATATAACTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGATCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGACAATAATGATAGT

mRNA sequence

AAGAAGCATCTGACTCCTTCATGCAGGCCTCTTGACTCGGGGGATATAACTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGATCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGACAATAATGATAGT

Coding sequence (CDS)

AAGAAGCATCTGACTCCTTCATGCAGGCCTCTTGACTCGGGGGATATAACTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGATCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGACAATAATGATAGT

Protein sequence

KKHLTPSCRPLDSGDITQLVELRSCNWIVAITGWMSNCPDNNDS
Homology
BLAST of MC02g1047 vs. NCBI nr
Match: CAG7888809.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 73.2 bits (178), Expect = 1.17e-15
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1  KKHLTPSCR-PLDSGDITQLVELRSCNWIVAITGWMSNCPDNNDS 44
          KK LTPSC   L  GDI QLVELRSCNW+VAITGW+SNCP  NDS
Sbjct: 11 KKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDS 55

BLAST of MC02g1047 vs. NCBI nr
Match: THU42411.1 (hypothetical protein C4D60_Mb00t17770 [Musa balbisiana])

HSP 1 Score: 73.9 bits (180), Expect = 4.64e-15
Identity = 35/45 (77.78%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1   KKHLTPSC-RPLDSGDITQLVELRSCNWIVAITGWMSNCPDNNDS 44
           KKHLT SC   L  GDI QLVELRSCNW+VAITGWMSNCP  NDS
Sbjct: 94  KKHLTLSCILHLARGDIAQLVELRSCNWVVAITGWMSNCPGGNDS 138

BLAST of MC02g1047 vs. NCBI nr
Match: VDD65585.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 73.2 bits (178), Expect = 7.05e-15
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1  KKHLTPSCR-PLDSGDITQLVELRSCNWIVAITGWMSNCPDNNDS 44
          KK LTPSC   L  GDI QLVELRSCNW+VAITGW+SNCP  NDS
Sbjct: 45 KKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDS 89

BLAST of MC02g1047 vs. NCBI nr
Match: VVW90651.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 70.9 bits (172), Expect = 7.71e-15
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 10 PLDSGDITQLVELRSCNWIVAITGWMSNCPDNNDS 44
          PL SGDI QLVELRSCNW+VAITGWMSNCP  NDS
Sbjct: 21 PLGSGDIAQLVELRSCNWVVAITGWMSNCPGGNDS 55

BLAST of MC02g1047 vs. NCBI nr
Match: KAG9438669.1 (hypothetical protein H6P81_021389 [Aristolochia fimbriata])

HSP 1 Score: 73.6 bits (179), Expect = 7.84e-15
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 1   KKHLTPSCRPLDSGDITQLVELRSCNWIVAITGWMSNCP 39
           KKHLTPSC     GDI QLVELRSCNW+VAITGWMSNCP
Sbjct: 63  KKHLTPSCMLHLGGDIAQLVELRSCNWVVAITGWMSNCP 101

BLAST of MC02g1047 vs. ExPASy TrEMBL
Match: A0A4S8I3U5 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t17770 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.25e-15
Identity = 35/45 (77.78%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1   KKHLTPSC-RPLDSGDITQLVELRSCNWIVAITGWMSNCPDNNDS 44
           KKHLT SC   L  GDI QLVELRSCNW+VAITGWMSNCP  NDS
Sbjct: 94  KKHLTLSCILHLARGDIAQLVELRSCNWVVAITGWMSNCPGGNDS 138

BLAST of MC02g1047 vs. ExPASy TrEMBL
Match: A0A3P6HAZ9 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC44T60813H PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.41e-15
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1  KKHLTPSCR-PLDSGDITQLVELRSCNWIVAITGWMSNCPDNNDS 44
          KK LTPSC   L  GDI QLVELRSCNW+VAITGW+SNCP  NDS
Sbjct: 45 KKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDS 89

BLAST of MC02g1047 vs. ExPASy TrEMBL
Match: A0A5K1HNG3 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30730 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.73e-15
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 10 PLDSGDITQLVELRSCNWIVAITGWMSNCPDNNDS 44
          PL SGDI QLVELRSCNW+VAITGWMSNCP  NDS
Sbjct: 21 PLGSGDIAQLVELRSCNWVVAITGWMSNCPGGNDS 55

BLAST of MC02g1047 vs. ExPASy TrEMBL
Match: A0A3P6G3H1 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC29T60625H PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.84e-15
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1  KKHLTPSCR-PLDSGDITQLVELRSCNWIVAITGWMSNCPDNNDS 44
          KK LTPSC   L  GDI QLVELRSCNW+VAITGW+SNCP  NDS
Sbjct: 50 KKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDS 94

BLAST of MC02g1047 vs. ExPASy TrEMBL
Match: A0A5K1HNN7 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30082 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.02e-15
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 10 PLDSGDITQLVELRSCNWIVAITGWMSNCPDNNDS 44
          PL SGDI QLVELRSCNW+VAITGWMSNCP  NDS
Sbjct: 21 PLGSGDIAQLVELRSCNWVVAITGWMSNCPGGNDS 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
CAG7888809.11.17e-1575.56unnamed protein product [Brassica rapa][more]
THU42411.14.64e-1577.78hypothetical protein C4D60_Mb00t17770 [Musa balbisiana][more]
VDD65585.17.05e-1575.56unnamed protein product [Brassica oleracea][more]
VVW90651.17.71e-1585.71unnamed protein product, partial [Nymphaea colorata][more]
KAG9438669.17.84e-1582.05hypothetical protein H6P81_021389 [Aristolochia fimbriata][more]
Match NameE-valueIdentityDescription
A0A4S8I3U52.25e-1577.78Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t17770 PE=4 SV=... [more]
A0A3P6HAZ93.41e-1575.56Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC44T60813H PE=4 SV=1[more]
A0A5K1HNG33.73e-1585.71Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30... [more]
A0A3P6G3H13.84e-1575.56Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC29T60625H PE=4 SV=1[more]
A0A5K1HNN74.02e-1585.71Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g1047.1MC02g1047.1mRNA