MC02g0297 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g0297
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA polymerase epsilon subunit C
Location	MC02: 2699668 .. 2701999 (+)
RNA-Seq Expression	MC02g0297
Synteny	MC02g0297

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGTCCAAAAAATCTAGTACTGAAGCGAAGAGCAAAGAAGCGGGAACATCGAAATCAGCCACCAAAACCAAAGCCAAAGCCAAAACCAAAACCCTCAGCAACGCCACAAAATCCGACAAGGACGTTTCCAAGAAGAACAACAACAAGAAGAAGATTAGCAACAAGAAGCACGCCAACAATGGCTCCGCCGAGGAGAACGACGTCTTTGAGATCTCTGCTCCAGATTCAGCATCTAGAGAGGACGACGCCGATGAAGACAGAACCGAAACCACGAGTAGAAAAGCTAACAGCTCGAAATCGAAGAAAGTAAAGCGGAACCATGGGAAGAAGGAAGAGAATGGTTACGAAGAAGAAGAAGAAGAAGAAGAACAAGTCGAGGAGAAGATTTACAAATTCCCAATGCATCGGATCAAAAAAATCACGAGGGACGAAAATTCTGATTTACGTATAAATCAGGAAGCCTTGTTTCTCGTCAACAAAGCCACGGTAAGCGCCCCCCAACCAGTGAATTGTGCTCCCAGAACTGCTCGATTAGAGTTCGATTAAAGAATTAGGTATTTTCTGTTGGTGGGTGGTGGGTTGGGGAGAAATTGTTCTATAATCTTACGTTTATTGTTTCTAAAATTGATTCTGTTGCGTCTGCAAAAACTTCTTAATTGTTGCAGGAGATGTTTCTCGTACAATTTTGCAAAGATGCTTATGCTTGCTGTGCTCAGGATCGGAAAAAGTCTCTTGCTTACAAGCATCTATGTAAAGTTTCTACTCCCTGTTCTAAATAATGTGACACCTGCAAATTATATCATAGTATATTTCAATTGCAATTTACAATTATTAAAATAAAAAAAAGTAAAAATTGGACCTGAAAATAGTTGAGAGGGTTCCAACTCCACTAGCATATACACATCATGACAGAGCTTTAACTTTTAATGGGCTGCAATGTTTTAATTTATGCTCCTCATGATACAAGGGCTCACATTTAATAGCGTCTGATTTCTTTCTGTATTCATGCTGCAAAATGAATAACAGCATGATGGGAAGATATCAGGGTCCTGTCACATTTTAACATGGACTGTGAACTTAGATATAGGTTACTCTAACTTCTTGGTAAAGGGATTTGTATTATCAGCCTCATCTATAATTTTATGTTGTGTTGTGGAATTACTGATTTGTATTATCAGTGCGTTGGTTTATGCTTTCAAAGAGACGATTTCTATGGTGGCATGGAAGTTTTTGTTAAATCATATCACAAAGCCACATTTTATCTGGCTGGAATTGGATGATTTACTGACCCAAATTATGTGTAGAGAGACTCCCAATAAGTTCACGTATATGTGGAGGAATAAGAAATGGCTAGTAGTTCAATCCGATACTTGGGAAGGGAATAAGTGAGTTGGGGAGGGCTGAATATCGGCCTTCCTTATCTTGGGTAATTCTTAAGTTGGGTGGTCAACGAGACAGACAAGGGACCGAATTGGAGGAGAGTATATTTGGGAATTGATAATGGGGCATTGTGAATCTAGTAGAAATTTCAATTTAGATGAGGAGCGAACAAGAAGACTCCTGGATCTCTTCCCTTAGTTTTGTATAATGTATTCCATCCATTAATAGAAAGTTAATTCAAGTATCTATCATCTGTCTAGGCGATTTTATCAAAATAATGCTGAAAGTTTGATTAGACTTTCACTTTACATATTGCTTCATTTTATCTGGTATTGCTTCCAATTTTACATGAGGGAATTCTGATGACCCTTCTTTTATTTATTGACAACATTTTGATGGTGAACTATATGGCGGTTAAAAGGAAGGAAATAAAGAAAATTTATCTTTTCCGGAGTTACCTATGGGAACATCATTGAATTTCTATGCATATGTTGTACCTCCAGCAATCGAAATAAGATGTGTTCAATTCAAATGTATTTCTGGAACCTTATCATAGACCATCCTTTATCCTGCTTGAAATTTAACTTTAGAATCTGCTCTCTTTGGATAATAGCCACCTAATTCAGTTCAGAAAACATGTTTCTGATTGATTAACGAAGCATTATTTTAGATGTAAGACTTTCACTGAAGTAGTAGTAAGATTATCCTTTGTTGTTGCAGCATCGGTAGTTTGTAAAAGGAAGAGGTATGACTTTCTTTCAGGTACTTATACACGGCTCTTATATATGCTCAACTACTTCTATTATTTCAGATGATGAGAAATCTAACTCGATAGACAACTTATAAAACGTCACGATACTTTTTTTTTCCCTTTTCAGATTTTGTCCCAGAAAAATTAAAATTTGAAGATGCGTTAAAGGAGAGAAGCATGGCGGAATCAGGGAAA

mRNA sequence

ATGGCTTCGTCCAAAAAATCTAGTACTGAAGCGAAGAGCAAAGAAGCGGGAACATCGAAATCAGCCACCAAAACCAAAGCCAAAGCCAAAACCAAAACCCTCAGCAACGCCACAAAATCCGACAAGGACGTTTCCAAGAAGAACAACAACAAGAAGAAGATTAGCAACAAGAAGCACGCCAACAATGGCTCCGCCGAGGAGAACGACGTCTTTGAGATCTCTGCTCCAGATTCAGCATCTAGAGAGGACGACGCCGATGAAGACAGAACCGAAACCACGAGTAGAAAAGCTAACAGCTCGAAATCGAAGAAAGTAAAGCGGAACCATGGGAAGAAGGAAGAGAATGGTTACGAAGAAGAAGAAGAAGAAGAAGAACAAGTCGAGGAGAAGATTTACAAATTCCCAATGCATCGGATCAAAAAAATCACGAGGGACGAAAATTCTGATTTACGTATAAATCAGGAAGCCTTGTTTCTCGTCAACAAAGCCACGGAGATGTTTCTCGTACAATTTTGCAAAGATGCTTATGCTTGCTGTGCTCAGGATCGGAAAAAGTCTCTTGCTTACAAGCATCTATCATCGGTAGTTTGTAAAAGGAAGAGGTATGACTTTCTTTCAGATTTTGTCCCAGAAAAATTAAAATTTGAAGATGCGTTAAAGGAGAGAAGCATGGCGGAATCAGGGAAA

Coding sequence (CDS)

ATGGCTTCGTCCAAAAAATCTAGTACTGAAGCGAAGAGCAAAGAAGCGGGAACATCGAAATCAGCCACCAAAACCAAAGCCAAAGCCAAAACCAAAACCCTCAGCAACGCCACAAAATCCGACAAGGACGTTTCCAAGAAGAACAACAACAAGAAGAAGATTAGCAACAAGAAGCACGCCAACAATGGCTCCGCCGAGGAGAACGACGTCTTTGAGATCTCTGCTCCAGATTCAGCATCTAGAGAGGACGACGCCGATGAAGACAGAACCGAAACCACGAGTAGAAAAGCTAACAGCTCGAAATCGAAGAAAGTAAAGCGGAACCATGGGAAGAAGGAAGAGAATGGTTACGAAGAAGAAGAAGAAGAAGAAGAACAAGTCGAGGAGAAGATTTACAAATTCCCAATGCATCGGATCAAAAAAATCACGAGGGACGAAAATTCTGATTTACGTATAAATCAGGAAGCCTTGTTTCTCGTCAACAAAGCCACGGAGATGTTTCTCGTACAATTTTGCAAAGATGCTTATGCTTGCTGTGCTCAGGATCGGAAAAAGTCTCTTGCTTACAAGCATCTATCATCGGTAGTTTGTAAAAGGAAGAGGTATGACTTTCTTTCAGATTTTGTCCCAGAAAAATTAAAATTTGAAGATGCGTTAAAGGAGAGAAGCATGGCGGAATCAGGGAAA

Protein sequence

MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHANNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK

Homology

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BLAST of MC02g0297 vs. ExPASy Swiss-Prot
Match: Q9NRG0 (Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.0e-06
Identity = 33/102 (32.35%), Postives = 53/102 (51.96%), Query Frame = 0


Query: 128 EEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSL 187
           E+++   P+ RI+ I +       INQEAL L  KATE+F+      +Y   +   KK L
Sbjct: 13  EQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVL 72

Query: 188 AYKHLSSVVCKRKRYDFLSDFVPEKL---KFEDALKERSMAE 227
            Y  L++   + + + FL+D +P+K+   K+   LKE    E
Sbjct: 73  TYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREE 114

[Close]

BLAST of MC02g0297 vs. ExPASy Swiss-Prot
Match: Q9JKP8 (Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.2e-05
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 123 EEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 182
           +E+  ++++   P+ RI+ I +       INQEAL L  KATE+F+      +Y   +  
Sbjct: 8   KEKCGDQRLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGK 67

Query: 183 RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKL---KFEDALKERSMAE 227
            KK+L Y  L+S     +   FL+D +P+K+   K+   LKE+   E
Sbjct: 68  AKKALTYSDLASTAEDSETLQFLADILPKKILASKYLKMLKEKREEE 114

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BLAST of MC02g0297 vs. ExPASy Swiss-Prot
Match: Q9V452 (Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 GN=Chrac-16 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.2e-05
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 135 PMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYA-CCAQDRKKSLAYKHLS 194
           P+ R++ I +       I  E LFL+ K TE+F+      AY     Q   ++L Y+HLS
Sbjct: 21  PLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLS 80

Query: 195 SVVCKRKRYDFLSDFVPEKLK---FEDALKERSMAES 228
            VV K K  +FL   VP+K++   F++ L+    A S
Sbjct: 81  QVVNKNKNLEFLLQIVPQKIRVHQFQEMLRLNRSAGS 117

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BLAST of MC02g0297 vs. NCBI nr
Match: XP_022140741.1 (DNA polymerase epsilon subunit C [Momordica charantia])

HSP 1 Score: 398 bits (1023), Expect = 7.08e-139
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120
           NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE
Sbjct: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120

Query: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180
           EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA
Sbjct: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180

Query: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229
           QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229

[Close]

BLAST of MC02g0297 vs. NCBI nr
Match: XP_008463933.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo])

HSP 1 Score: 283 bits (725), Expect = 1.25e-93
Identity = 177/231 (76.62%), Postives = 191/231 (82.68%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MASSKKSSTEAK KEAGTSK A       K KT +NA  SDK++SKK   KKKIS     
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPA------PKAKTHNNARNSDKEISKKKKKKKKISIS--T 60

Query: 61  NNGSAEENDVFEISAPDSASREDD--ADEDRTETTSRKANSSKSKKVKRNHGKKEENGYE 120
           NNGS ++N+V  +S P  ++ EDD  ADED+ ETTSRK  +SKSKKVKRNH K+E+NGY 
Sbjct: 61  NNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYA 120

Query: 121 EEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 180
           EEEEEE   EEKIYKFPMHRIKKI RDENSDLRINQEALFLVNKA+EMFLVQFCKDAYAC
Sbjct: 121 EEEEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYAC 180

Query: 181 CAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229
           CAQDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 CAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 221

[Close]

BLAST of MC02g0297 vs. NCBI nr
Match: XP_022986059.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 283 bits (723), Expect = 3.09e-93
Identity = 181/237 (76.37%), Postives = 192/237 (81.01%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKA-KAKTKTLSNATKSDKDVSKKNNNKKKIS--NK 60
           MASSKKSS+EAKSKEAGTSK A K K         +NA K DK  SK    KKK+S  N 
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSK----KKKVSSNNN 60

Query: 61  KHANNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGY 120
           KH +NGS +EN+V  ISAP       DA+EDR ETTS+  N+SKSKKVKRNHGKKEENGY
Sbjct: 61  KHTSNGSVKENEVLPISAPG------DAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGY 120

Query: 121 EEEEEEEEQ-----VEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFC 180
            EEEEEEE+      EEKIYKFPM+RIKKI RDENSDLRINQEALFLVNKATEMFLVQFC
Sbjct: 121 AEEEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFC 180

Query: 181 KDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229
           KDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 KDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 227

[Close]

BLAST of MC02g0297 vs. NCBI nr
Match: XP_023534490.1 (ABC transporter F family member 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282 bits (721), Expect = 6.44e-93
Identity = 180/233 (77.25%), Postives = 195/233 (83.69%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MAS+KKSSTE KSKEAGTSK ATKT     TKTL NA KSDK+ SKK   KKKI + KH+
Sbjct: 1   MASTKKSSTEIKSKEAGTSKPATKT-----TKTL-NARKSDKNDSKKK--KKKIYSNKHS 60

Query: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGY--- 120
           NNGS +E+D   ISAP SAS E+DA E+R ETTS+KA +SKSK  K NH KKEENGY   
Sbjct: 61  NNGSVKEDDAVFISAPGSASEEEDAGEERAETTSKKAKTSKSKVGKWNHVKKEENGYAEQ 120

Query: 121 -EEEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAY 180
            EEEEEEEE+V+EKIY FPM RIKKITRDENSD RINQEALFLVNKATEMFL+QFCKDAY
Sbjct: 121 EEEEEEEEEEVQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLLQFCKDAY 180

Query: 181 ACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229
           ACCA+DRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDA+KE  MAESGK
Sbjct: 181 ACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAVKEIGMAESGK 225

[Close]

BLAST of MC02g0297 vs. NCBI nr
Match: XP_023512055.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023512056.1 DNA polymerase epsilon subunit C-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281 bits (720), Expect = 8.83e-93
Identity = 177/239 (74.06%), Postives = 193/239 (80.75%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNK--- 60
           MASSKKSS+EAKSKEAGTSK A       K KT +N   + + + K  + KKK+SN    
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPA------PKNKTHNNNNNNARTIDKVYSKKKKVSNNNNN 60

Query: 61  -KHANNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENG 120
            KH +NGS +EN+V  ISAP       DA+EDR ETTS+  N++KSKKVKRNHGKKEENG
Sbjct: 61  NKHTSNGSVKENEVLPISAPG------DAEEDRVETTSKSPNTTKSKKVKRNHGKKEENG 120

Query: 121 YEEEEEEEEQ------VEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQ 180
           Y EEEEEEE+      VEEKIYKFPM+RIKKI RDENSDLRINQEALFLVNKATEMFLVQ
Sbjct: 121 YAEEEEEEEEAEEEEEVEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQ 180

Query: 181 FCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229
           FCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 FCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 227

[Close]

BLAST of MC02g0297 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1)

HSP 1 Score: 398 bits (1023), Expect = 3.43e-139
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120
           NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE
Sbjct: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120

Query: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180
           EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA
Sbjct: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180

Query: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229
           QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229

[Close]

BLAST of MC02g0297 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 283 bits (725), Expect = 6.06e-94
Identity = 177/231 (76.62%), Postives = 191/231 (82.68%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MASSKKSSTEAK KEAGTSK A       K KT +NA  SDK++SKK   KKKIS     
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPA------PKAKTHNNARNSDKEISKKKKKKKKISIS--T 60

Query: 61  NNGSAEENDVFEISAPDSASREDD--ADEDRTETTSRKANSSKSKKVKRNHGKKEENGYE 120
           NNGS ++N+V  +S P  ++ EDD  ADED+ ETTSRK  +SKSKKVKRNH K+E+NGY 
Sbjct: 61  NNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYA 120

Query: 121 EEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 180
           EEEEEE   EEKIYKFPMHRIKKI RDENSDLRINQEALFLVNKA+EMFLVQFCKDAYAC
Sbjct: 121 EEEEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYAC 180

Query: 181 CAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229
           CAQDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 CAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 221

[Close]

BLAST of MC02g0297 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1)

HSP 1 Score: 283 bits (723), Expect = 1.50e-93
Identity = 181/237 (76.37%), Postives = 192/237 (81.01%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKA-KAKTKTLSNATKSDKDVSKKNNNKKKIS--NK 60
           MASSKKSS+EAKSKEAGTSK A K K         +NA K DK  SK    KKK+S  N 
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSK----KKKVSSNNN 60

Query: 61  KHANNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGY 120
           KH +NGS +EN+V  ISAP       DA+EDR ETTS+  N+SKSKKVKRNHGKKEENGY
Sbjct: 61  KHTSNGSVKENEVLPISAPG------DAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGY 120

Query: 121 EEEEEEEEQ-----VEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFC 180
            EEEEEEE+      EEKIYKFPM+RIKKI RDENSDLRINQEALFLVNKATEMFLVQFC
Sbjct: 121 AEEEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFC 180

Query: 181 KDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229
           KDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 KDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 227

[Close]

BLAST of MC02g0297 vs. ExPASy TrEMBL
Match: A0A6J1K264 (transcriptional activator HAP5-like OS=Cucurbita maxima OX=3661 GN=LOC111491038 PE=4 SV=1)

HSP 1 Score: 279 bits (714), Expect = 3.26e-92
Identity = 174/229 (75.98%), Postives = 189/229 (82.53%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MAS+KKS+ E KSKEAGTSK ATKTK      TL NA KSDK+ SKK   KKKI + KH+
Sbjct: 1   MASTKKSNAEIKSKEAGTSKPATKTK------TL-NARKSDKNDSKKKKKKKKIYSNKHS 60

Query: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120
           NNGS +E+D   ISAP SAS E+DA EDR ET S++A +SKSK  K NH KKEENGY E+
Sbjct: 61  NNGSVKEDDAVFISAPGSASEEEDAGEDRAETRSKEAKTSKSKVGKWNHVKKEENGYAEQ 120

Query: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180
           EEEEE+  EKIY FPM RIKKITRDENSD RINQEALFLVNKATEMFLVQFCKDAYACC+
Sbjct: 121 EEEEEEAHEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLVQFCKDAYACCS 180

Query: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229
           +DRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKE  MAESGK
Sbjct: 181 RDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKEIGMAESGK 222

[Close]

BLAST of MC02g0297 vs. ExPASy TrEMBL
Match: A0A0A0KCQ2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G294440 PE=4 SV=1)

HSP 1 Score: 278 bits (712), Expect = 5.74e-92
Identity = 173/231 (74.89%), Postives = 188/231 (81.39%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MASSKKSSTEAKSKE GTSK +       K KT +NA  SDKD+SKK   KKKIS     
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPS------PKAKTHNNARNSDKDISKKKKKKKKISISIST 60

Query: 61  NNGSAEENDVFEISAPDSASREDD--ADEDRTETTSRKANSSKSKKVKRNHGKKEENGYE 120
           NNGS ++N    +SAP +++ ED   ADED+ ETTSRK+N+SKSKKVKRNH K+E+N Y 
Sbjct: 61  NNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA 120

Query: 121 EEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 180
            EEE     EEKIYKFPMHRIKKI RDENSDLRINQEALFLVNKA+EMFLVQFCKDAYAC
Sbjct: 121 AEEE----AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYAC 180

Query: 181 CAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229
           CAQDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 CAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 221

[Close]

BLAST of MC02g0297 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-17
Identity = 86/233 (36.91%), Postives = 130/233 (55.79%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           M SSKK   +    +   +K++ ++K  + ++T            KK +NK  I  KK  
Sbjct: 1   MVSSKKPKEKKARSDVVVNKASGRSKRSSGSRT------------KKTSNKVNIVKKK-- 60

Query: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKK---EENGY 120
                   +++EIS    +S  D  +E      ++K+N   S   KR +GK         
Sbjct: 61  -------PEIYEIS---ESSSSDSVEEAIRGDEAKKSNGVVS---KRGNGKSVGIPTKTS 120

Query: 121 EEEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYA 180
           +  EE++   E+   KFPM+RI++I R +NS  +I Q+A+FLVNKATEMF+ +F ++AY 
Sbjct: 121 KNREEDDGGAEDAKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYD 180

Query: 181 CCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALK--ERSMAESG 229
              +D+KK + YKHLSSVV   +RY+FL+D VPEKLK E AL+  ER M ++G
Sbjct: 181 SSVKDKKKFIHYKHLSSVVSNDQRYEFLADSVPEKLKAEAALEEWERGMTDAG 206

The following BLAST results are available for this feature:

BLAST of MC02g0297 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NRG0	8.0e-06	32.35	Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1...	[more]
Q9JKP8	5.2e-05	31.78	Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=...	[more]
Q9V452	5.2e-05	34.02	Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 ...	[more]

BLAST of MC02g0297 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140741.1	7.08e-139	100.00	DNA polymerase epsilon subunit C [Momordica charantia]	[more]
XP_008463933.1	1.25e-93	76.62	PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]	[more]
XP_022986059.1	3.09e-93	76.37	DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima]	[more]
XP_023534490.1	6.44e-93	77.25	ABC transporter F family member 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_023512055.1	8.83e-93	74.06	DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita pepo subsp. pepo] >X...	[more]

BLAST of MC02g0297 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CGZ0	3.43e-139	100.00	DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 ...	[more]
A0A1S3CKU7	6.06e-94	76.62	DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV...	[more]
A0A6J1JF10	1.50e-93	76.37	DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1K264	3.26e-92	75.98	transcriptional activator HAP5-like OS=Cucurbita maxima OX=3661 GN=LOC111491038 ...	[more]
A0A0A0KCQ2	5.74e-92	74.89	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G2944...	[more]

BLAST of MC02g0297 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07980.1	2.7e-17	36.91	nuclear factor Y, subunit C10	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..50
None	No IPR available	PANTHER	PTHR10252:SF93	HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED	coord: 19..226
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 19..226
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 91..211 e-value: 3.9E-23 score: 83.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 149..211
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 133..196 e-value: 3.7E-15 score: 55.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g0297.1	MC02g0297.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity