MC01g_new0419 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g_new0419
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptiondynein assembly factor with WDR repeat domains 1
LocationMC01: 17599565 .. 17599918 (-)
RNA-Seq ExpressionMC01g_new0419
SyntenyMC01g_new0419
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACGTCATGGGTGGTGAAGCATTCTTTCGCCGCCTCCCAGCTGTTGATCACGACGGCTTTGCGGATACCCAATTGGATGGAGAAGATTGGACCGTATTCATCTGCCAAAGCACTCAGCTTTATATGGGGCAGTTCAGGCCCTCCGAGGAGAGGAAGGTGCCCAATTAGAGGCCACCCGCCGGCCACTGTGGGCGGATTTAGACCCTTTGATGCAGCGGCGCCGGTGAATGTTTTGAGGAGAAAACGGAAGACATTGATGGCAATGACACCGGCGAGAAGGGTGGTAATCACGTTGAGCCAATTGAACTGCGGATTTGATTCCTTCGTCGAAGGAGGGGCGGAGGATTAA

mRNA sequence

ATGGCAACGTCATGGGTGGTGAAGCATTCTTTCGCCGCCTCCCAGCTGTTGATCACGACGGCTTTGCGGATACCCAATTGGATGGAGAAGATTGGACCGTATTCATCTGCCAAAGCACTCAGCTTTATATGGGGCAGTTCAGGCCCTCCGAGGAGAGGAAGGTGCCCAATTAGAGGCCACCCGCCGGCCACTGTGGGCGGATTTAGACCCTTTGATGCAGCGGCGCCGGTGAATGTTTTGAGGAGAAAACGGAAGACATTGATGGCAATGACACCGGCGAGAAGGGTGGTAATCACGTTGAGCCAATTGAACTGCGGATTTGATTCCTTCGTCGAAGGAGGGGCGGAGGATTAA

Coding sequence (CDS)

ATGGCAACGTCATGGGTGGTGAAGCATTCTTTCGCCGCCTCCCAGCTGTTGATCACGACGGCTTTGCGGATACCCAATTGGATGGAGAAGATTGGACCGTATTCATCTGCCAAAGCACTCAGCTTTATATGGGGCAGTTCAGGCCCTCCGAGGAGAGGAAGGTGCCCAATTAGAGGCCACCCGCCGGCCACTGTGGGCGGATTTAGACCCTTTGATGCAGCGGCGCCGGTGAATGTTTTGAGGAGAAAACGGAAGACATTGATGGCAATGACACCGGCGAGAAGGGTGGTAATCACGTTGAGCCAATTGAACTGCGGATTTGATTCCTTCGTCGAAGGAGGGGCGGAGGATTAA

Protein sequence

MATSWVVKHSFAASQLLITTALRIPNWMEKIGPYSSAKALSFIWGSSGPPRRGRCPIRGHPPATVGGFRPFDAAAPVNVLRRKRKTLMAMTPARRVVITLSQLNCGFDSFVEGGAED
Homology
BLAST of MC01g_new0419 vs. NCBI nr
Match: XP_017603111.1 (PREDICTED: dynein assembly factor with WDR repeat domains 1 [Gossypium arboreum])

HSP 1 Score: 63.9 bits (154), Expect = 5.24e-09
Identity = 34/67 (50.75%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 2   ATSWVVKHSFAASQLLITTALRIPNWMEKIGPYSSAKALSFIWGSSGPPRRGRCPIRGHP 61
           A S VVKHS A SQLL T+   +P+   KIGPY+SAK    +W   GPP R R P  G  
Sbjct: 430 ALSLVVKHSLAISQLLTTSVGCMPSLKVKIGPYASAKLPMVMWAGFGPPNRWRWPRNGLA 489

Query: 62  PATVGGF 68
           P   GGF
Sbjct: 490 PPISGGF 496

BLAST of MC01g_new0419 vs. NCBI nr
Match: KAG5543331.1 (hypothetical protein RHGRI_016160 [Rhododendron griersonianum])

HSP 1 Score: 61.2 bits (147), Expect = 4.28e-08
Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 0

Query: 7   VKHSFAASQLLITTALRIPNWMEKIGPYSSAKALSFIWGSSGPPRRGRCPIRGHPPATVG 66
           VKHS A S+LL T A   P  +  IGP  SAKA + +W S  P +RGR PI GHPP   G
Sbjct: 303 VKHSLAISELLTTMARWAPRRIVNIGPCLSAKAPNTLWTSLRPAKRGRWPIIGHPPPASG 362

BLAST of MC01g_new0419 vs. NCBI nr
Match: GER40627.1 (hypothetical protein STAS_17307, partial [Striga asiatica])

HSP 1 Score: 57.0 bits (136), Expect = 1.13e-06
Identity = 37/89 (41.57%), Postives = 47/89 (52.81%), Query Frame = 0

Query: 1  MATSWVVKHSFAASQLLITTALRIPNWMEKIGPYSSAKALSFIWGSSGPP---RRGRCPI 60
          MA S VVK   A+SQLL T A   P+ + KIGPY + +  S  WGS  PP   +R RCP+
Sbjct: 11 MAASKVVKRLLASSQLLTTRARCTPSRIVKIGPYVTERLASLKWGS--PPVGDKRWRCPV 70

Query: 61 RGHPPATVGG-FRPFDAAAPVNVLRRKRK 85
              P T GG FR      P   + + +K
Sbjct: 71 NSRAPPTSGGDFRVLVFGLPPQKVEQGQK 97

BLAST of MC01g_new0419 vs. ExPASy TrEMBL
Match: A0A6N2LJN9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS178029 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.61e-12
Identity = 43/89 (48.31%), Postives = 52/89 (58.43%), Query Frame = 0

Query: 4   SWVVKHSFAASQLLITTALRIPNWMEKIGPYSSAKALSFIWGSSG-PPRRGRCPIRGHPP 63
           S+VVKHSF  S+ L T A  +P  +EKIGPY SA A S +  S   PPRR R PI GH P
Sbjct: 16  SFVVKHSFTISRSLTTIAGFVPRRIEKIGPYLSAMAPSVLCSSWFLPPRRCRWPITGHAP 75

Query: 64  ATVGGFRPFD-------AAAPVNVLRRKR 84
           AT GG  PF        AA  V ++ ++R
Sbjct: 76  ATSGGLLPFFLFRLANFAAKKVEIIAKRR 104

BLAST of MC01g_new0419 vs. ExPASy TrEMBL
Match: A0A6P4LKT5 (dynein assembly factor with WDR repeat domains 1 OS=Gossypium arboreum OX=29729 GN=LOC108450133 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.54e-09
Identity = 34/67 (50.75%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 2   ATSWVVKHSFAASQLLITTALRIPNWMEKIGPYSSAKALSFIWGSSGPPRRGRCPIRGHP 61
           A S VVKHS A SQLL T+   +P+   KIGPY+SAK    +W   GPP R R P  G  
Sbjct: 430 ALSLVVKHSLAISQLLTTSVGCMPSLKVKIGPYASAKLPMVMWAGFGPPNRWRWPRNGLA 489

Query: 62  PATVGGF 68
           P   GGF
Sbjct: 490 PPISGGF 496

BLAST of MC01g_new0419 vs. ExPASy TrEMBL
Match: A0A5A7Q8B3 (Uncharacterized protein (Fragment) OS=Striga asiatica OX=4170 GN=STAS_17307 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.49e-07
Identity = 37/89 (41.57%), Postives = 47/89 (52.81%), Query Frame = 0

Query: 1  MATSWVVKHSFAASQLLITTALRIPNWMEKIGPYSSAKALSFIWGSSGPP---RRGRCPI 60
          MA S VVK   A+SQLL T A   P+ + KIGPY + +  S  WGS  PP   +R RCP+
Sbjct: 11 MAASKVVKRLLASSQLLTTRARCTPSRIVKIGPYVTERLASLKWGS--PPVGDKRWRCPV 70

Query: 61 RGHPPATVGG-FRPFDAAAPVNVLRRKRK 85
              P T GG FR      P   + + +K
Sbjct: 71 NSRAPPTSGGDFRVLVFGLPPQKVEQGQK 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_017603111.15.24e-0950.75PREDICTED: dynein assembly factor with WDR repeat domains 1 [Gossypium arboreum][more]
KAG5543331.14.28e-0852.46hypothetical protein RHGRI_016160 [Rhododendron griersonianum][more]
GER40627.11.13e-0641.57hypothetical protein STAS_17307, partial [Striga asiatica][more]
Match NameE-valueIdentityDescription
A0A6N2LJN91.61e-1248.31Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS178029 PE=4 SV=... [more]
A0A6P4LKT52.54e-0950.75dynein assembly factor with WDR repeat domains 1 OS=Gossypium arboreum OX=29729 ... [more]
A0A5A7Q8B35.49e-0741.57Uncharacterized protein (Fragment) OS=Striga asiatica OX=4170 GN=STAS_17307 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g_new0419.1MC01g_new0419.1mRNA