MC01g1537 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g1537
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transcription factor bHLH144
Location	MC01: 19615077 .. 19615196 (+)
RNA-Seq Expression	MC01g1537
Synteny	MC01g1537

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACATTGGAGTAACGGGAAAGAGTTACAGAGCTGTCAAGGAAGTTGGGAAGGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTGATGCAAGTTTGTCAGGTAAACTACAAT

mRNA sequence

ATGTACATTGGAGTAACGGGAAAGAGTTACAGAGCTGTCAAGGAAGTTGGGAAGGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTGATGCAAGTTTGTCAGGTAAACTACAAT

Coding sequence (CDS)

ATGTACATTGGAGTAACGGGAAAGAGTTACAGAGCTGTCAAGGAAGTTGGGAAGGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTGATGCAAGTTTGTCAGGTAAACTACAAT

Protein sequence

MYIGVTGKSYRAVKEVGKVNMSVGIIAYYQVMQVCQVNYN

Homology

[Close]

BLAST of MC01g1537 vs. NCBI nr
Match: KAE8647743.1 (hypothetical protein Csa_002958 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 4.19e-13
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 1  MYIGVTGKSYRAVKEVGKVNMSVGIIAYYQVMQVCQVNY 39
          MYIG+TGK  RAV+E+GKVNMSVGIIAYYQVMQVCQ  Y
Sbjct: 1  MYIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEY 39

[Close]

BLAST of MC01g1537 vs. NCBI nr
Match: KAG7026477.1 (Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 69.3 bits (168), Expect = 1.49e-12
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 1  MYIGVTGKSYRAVKEVGKVNMSVGIIAYYQVMQVCQVNYN 40
          MYIGVTGK +RAVKEVGKVNMSVGIIAYYQVMQVCQ + N
Sbjct: 1  MYIGVTGKRFRAVKEVGKVNMSVGIIAYYQVMQVCQSDLN 40

[Close]

BLAST of MC01g1537 vs. NCBI nr
Match: KAG7034698.1 (Transcription factor bHLH [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 1.27e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1  MYIGVTGKSYRAVKEVGKVNMSVGIIAYYQVMQVCQVNYN 40
          MYIG+TGK  RAVKEVGKVNMSVGIIAYYQVMQVCQ + N
Sbjct: 1  MYIGITGKRNRAVKEVGKVNMSVGIIAYYQVMQVCQSDLN 40

[Close]

BLAST of MC01g1537 vs. NCBI nr
Match: KAG6642198.1 (hypothetical protein CIPAW_09G126700 [Carya illinoinensis])

HSP 1 Score: 61.2 bits (147), Expect = 3.37e-11
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1  MYIGVTGKSYRAVKEVGKVNMSVGIIAYYQVMQVCQVNY 39
          MYIGVT K YRAVKEVG++ MSVGIIAYYQ++QVCQ  Y
Sbjct: 1  MYIGVTIKRYRAVKEVGQIKMSVGIIAYYQLIQVCQAEY 39

[Close]

BLAST of MC01g1537 vs. NCBI nr
Match: KAA0052558.1 (transcription factor bHLH144 [Cucumis melo var. makuwa] >TYK13268.1 transcription factor bHLH144 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 6.51e-11
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1  MYIGVTGKSYRAVKEVGKVNMSVGIIAYYQVMQVCQVNYN 40
          MYIG+TGK  RAV+E+GKVNMSVGIIAYYQVMQVCQ + N
Sbjct: 1  MYIGITGKRSRAVEEIGKVNMSVGIIAYYQVMQVCQSDLN 40

[Close]

BLAST of MC01g1537 vs. ExPASy TrEMBL
Match: A0A5A7UBJ4 (Transcription factor bHLH144 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008860 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.15e-11
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1  MYIGVTGKSYRAVKEVGKVNMSVGIIAYYQVMQVCQVNYN 40
          MYIG+TGK  RAV+E+GKVNMSVGIIAYYQVMQVCQ + N
Sbjct: 1  MYIGITGKRSRAVEEIGKVNMSVGIIAYYQVMQVCQSDLN 40

[Close]

BLAST of MC01g1537 vs. ExPASy TrEMBL
Match: F6HMI1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g02950 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.69e-11
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  MYIGVTGKSYRAVKEVGKVNMSVGIIAYYQVMQVCQVNY 39
          MYI VT K YRAVKEVGK+ MSVGIIA+YQ+MQVCQ  Y
Sbjct: 1  MYIAVTLKRYRAVKEVGKIKMSVGIIAHYQLMQVCQAEY 39

[Close]

BLAST of MC01g1537 vs. ExPASy TrEMBL
Match: A0A067GES9 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g048001mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.66e-11
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  MYIGVTGKSYRAVKEVGKVNMSVGIIAYYQVMQVCQVNY 39
          MYI +T K YRAVKEVGK+ MSVG+IAYYQ++QVCQ  Y
Sbjct: 1  MYIAITLKRYRAVKEVGKIKMSVGVIAYYQLVQVCQAEY 39

[Close]

BLAST of MC01g1537 vs. ExPASy TrEMBL
Match: A0A5D2J1T9 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G045300v1 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.47e-11
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MYIGVTGKSYRAVKEVGKVNMSVGIIAYYQVMQVCQVNY 39
          MYI  T K YRAVKEVGK+ MSVG+IAYYQ++QVCQ  Y
Sbjct: 1  MYIAATTKRYRAVKEVGKIKMSVGVIAYYQLVQVCQAEY 39

[Close]

BLAST of MC01g1537 vs. ExPASy TrEMBL
Match: A0A5D2AY00 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G044100v1 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.47e-11
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MYIGVTGKSYRAVKEVGKVNMSVGIIAYYQVMQVCQVNY 39
          MYI  T K YRAVKEVGK+ MSVG+IAYYQ++QVCQ  Y
Sbjct: 1  MYIAATTKRYRAVKEVGKIKMSVGVIAYYQLVQVCQAEY 39

The following BLAST results are available for this feature:

BLAST of MC01g1537 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g1537 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647743.1	4.19e-13	82.05	hypothetical protein Csa_002958 [Cucumis sativus]	[more]
KAG7026477.1	1.49e-12	87.50	Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7034698.1	1.27e-11	85.00	Transcription factor bHLH [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6642198.1	3.37e-11	76.92	hypothetical protein CIPAW_09G126700 [Carya illinoinensis]	[more]
KAA0052558.1	6.51e-11	80.00	transcription factor bHLH144 [Cucumis melo var. makuwa] >TYK13268.1 transcriptio...	[more]

BLAST of MC01g1537 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBJ4	3.15e-11	80.00	Transcription factor bHLH144 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
F6HMI1	4.69e-11	76.92	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g02950 PE=4 SV=...	[more]
A0A067GES9	6.66e-11	71.79	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g048001mg PE=4 SV=1	[more]
A0A5D2J1T9	9.47e-11	71.79	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G045300v1 P...	[more]
A0A5D2AY00	9.47e-11	71.79	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G044100v1 PE=...	[more]

BLAST of MC01g1537 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281	BNAA02G34170D PROTEIN	coord: 1..39
None	No IPR available	PANTHER	PTHR35281:SF3	BNAA07G07520D PROTEIN	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g1537.1	MC01g1537.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity